Wall clock time and date at job start Tue Mar 31 2020 10:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46920 * 2 1 4 4 N 1.46497 * 109.47238 * 179.97438 * 3 2 1 5 5 C 1.46496 * 120.00129 * 270.00499 * 4 3 2 6 6 C 1.53005 * 109.46942 * 269.99599 * 5 4 3 7 7 C 1.52997 * 109.46791 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99525 * 90.00006 * 4 3 2 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 4 3 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 4 3 11 11 N 1.46904 * 109.47192 * 180.28082 * 10 8 4 12 12 C 1.46959 * 110.99366 * 293.79652 * 11 10 8 13 13 C 1.53055 * 109.36033 * 176.81289 * 12 11 10 14 14 N 1.46951 * 109.36597 * 58.40016 * 13 12 11 15 15 C 1.46904 * 111.00106 * 176.81006 * 14 13 12 16 16 C 1.50703 * 109.47064 * 293.80441 * 15 14 13 17 17 H 1.07997 * 120.00351 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99533 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00460 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99581 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47196 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46852 * 119.99946 * 20 18 16 23 23 H 1.48500 * 109.47037 * 240.00244 * 20 18 16 24 24 C 1.46951 * 110.88318 * 300.67876 * 14 13 12 25 25 C 1.46949 * 111.00195 * 170.00155 * 11 10 8 26 26 H 1.09001 * 109.47127 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47702 * 299.99786 * 1 2 3 28 28 H 1.09001 * 109.47349 * 60.00353 * 1 2 3 29 29 H 1.09000 * 109.47318 * 240.00451 * 2 1 3 30 30 H 1.08993 * 109.47225 * 119.99889 * 2 1 3 31 31 H 1.09000 * 109.46757 * 60.00107 * 3 2 1 32 32 H 1.09001 * 109.46821 * 299.99970 * 3 2 1 33 33 H 1.08995 * 109.47364 * 30.00213 * 5 4 3 34 34 H 1.09002 * 109.47090 * 149.99764 * 5 4 3 35 35 H 1.08998 * 109.46999 * 300.00039 * 6 5 4 36 36 H 1.08997 * 109.46656 * 60.00331 * 6 5 4 37 37 H 1.08998 * 109.47437 * 299.99839 * 7 6 5 38 38 H 1.08997 * 109.47195 * 60.00730 * 7 6 5 39 39 H 1.09007 * 109.46786 * 180.02562 * 7 6 5 40 40 H 1.09009 * 109.47352 * 300.27556 * 10 8 4 41 41 H 1.08998 * 109.47585 * 60.27844 * 10 8 4 42 42 H 1.08992 * 109.49244 * 296.77467 * 12 11 10 43 43 H 1.09003 * 109.49250 * 56.84912 * 12 11 10 44 44 H 1.09003 * 109.48877 * 298.43651 * 13 12 11 45 45 H 1.08995 * 109.48745 * 178.37289 * 13 12 11 46 46 H 1.09003 * 109.46776 * 53.80031 * 15 14 13 47 47 H 1.08997 * 109.47404 * 173.79853 * 15 14 13 48 48 H 0.97000 * 120.00339 * 179.97438 * 19 18 16 49 49 H 1.08999 * 109.49376 * 299.35664 * 24 14 13 50 50 H 1.08995 * 109.51085 * 179.29736 * 24 14 13 51 51 H 1.09004 * 109.48945 * 303.14997 * 25 11 10 52 52 H 1.08997 * 109.49550 * 63.21794 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.2369 1.4428 1.2696 6 6 4.4917 2.8854 1.7112 7 6 5.2556 2.8855 3.0368 8 6 4.1792 1.4425 -1.1664 9 8 3.5732 1.4428 -2.2170 10 6 5.6862 1.4489 -1.1658 11 7 6.1764 1.4542 -2.5506 12 6 5.8355 0.1990 -3.2346 13 6 6.2921 0.2759 -4.6935 14 7 7.7404 0.5204 -4.7385 15 6 8.2307 0.5256 -6.1233 16 6 8.0846 -0.8535 -6.7131 17 1 7.6695 -1.6539 -6.1186 18 6 8.4808 -1.0933 -8.0118 19 7 8.9858 -0.1186 -8.7359 20 14 8.3004 -2.8029 -8.7427 21 1 7.7093 -3.7143 -7.7301 22 1 7.4123 -2.7419 -9.9313 23 1 9.6355 -3.3115 -9.1478 24 6 8.0813 1.7755 -4.0545 25 6 7.6248 1.6986 -2.5957 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.6476 0.9290 2.0290 34 1 5.1894 0.9290 1.1397 35 1 5.0811 3.3991 0.9517 36 1 3.5392 3.3991 1.8411 37 1 4.6659 2.3719 3.7961 38 1 6.2081 2.3716 2.9073 39 1 5.4368 3.9133 3.3517 40 1 6.0457 2.3393 -0.6497 41 1 6.0532 0.5593 -0.6539 42 1 6.3373 -0.6326 -2.7400 43 1 4.7568 0.0466 -3.1988 44 1 5.7701 1.0906 -5.1954 45 1 6.0663 -0.6649 -5.1952 46 1 7.6496 1.2358 -6.7117 47 1 9.2809 0.8168 -6.1359 48 1 9.2649 -0.2874 -9.6494 49 1 7.5796 2.6072 -4.5491 50 1 9.1599 1.9283 -4.0904 51 1 7.8506 2.6395 -2.0939 52 1 8.1469 0.8840 -2.0937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611174431.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:35 Heat of formation + Delta-G solvation = -55.438330 kcal Electronic energy + Delta-G solvation = -27002.852275 eV Core-core repulsion = 23422.113024 eV Total energy + Delta-G solvation = -3580.739250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.31149 -39.82039 -37.54729 -36.49523 -35.19271 -34.50946 -33.08193 -31.85342 -30.78774 -28.71864 -27.54117 -26.61360 -25.17237 -24.51882 -23.28194 -22.77641 -22.39662 -20.69063 -19.95886 -18.53980 -18.18906 -17.57202 -16.99316 -16.63674 -16.27810 -15.85149 -15.80590 -15.67802 -15.53111 -15.38291 -15.14574 -14.80152 -14.40120 -14.28086 -14.12176 -13.89226 -13.46324 -13.18115 -13.09059 -12.97727 -12.91125 -12.84636 -12.72337 -12.50079 -12.45203 -12.29431 -12.27236 -12.13743 -12.05992 -11.96639 -11.64025 -11.59766 -11.50555 -11.19442 -10.69056 -10.62460 -9.63706 -9.31661 -9.06772 -8.22530 -6.33000 1.39082 1.39933 1.53888 1.64434 1.93231 2.38881 2.92252 3.09341 3.28054 3.53822 3.93867 3.98525 4.02257 4.05516 4.11643 4.18284 4.25793 4.30089 4.36020 4.36668 4.46689 4.50855 4.51043 4.56853 4.61494 4.68324 4.74015 4.79591 4.85486 4.89303 4.93729 5.00021 5.01257 5.06016 5.15281 5.18374 5.22259 5.24140 5.25537 5.28078 5.36188 5.48784 5.61934 5.67662 5.92607 5.98930 6.04794 6.29017 6.44011 6.60358 6.82544 7.25731 7.36623 8.89220 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.002857 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.108259 B = 9798.706542 C =10980.507905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.115 3.885 4 N -0.612 5.612 5 C 0.103 3.897 6 C -0.140 4.140 7 C -0.147 4.147 8 C 0.509 3.491 9 O -0.566 6.566 10 C 0.042 3.958 11 N -0.542 5.542 12 C 0.074 3.926 13 C 0.076 3.924 14 N -0.541 5.541 15 C 0.208 3.792 16 C -0.524 4.524 17 H 0.061 0.939 18 C 0.000 4.000 19 N -0.935 5.935 20 Si 0.972 3.028 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.274 1.274 24 C 0.052 3.948 25 C 0.073 3.927 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.128 0.872 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.005 0.995 45 H 0.064 0.936 46 H -0.045 1.045 47 H 0.009 0.991 48 H 0.265 0.735 49 H 0.015 0.985 50 H 0.079 0.921 51 H 0.107 0.893 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 4.220 29.221 31.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.007 4.007 4 N -0.344 5.344 5 C -0.019 4.019 6 C -0.178 4.178 7 C -0.205 4.205 8 C 0.297 3.703 9 O -0.444 6.444 10 C -0.088 4.088 11 N -0.268 5.268 12 C -0.054 4.054 13 C -0.053 4.053 14 N -0.266 5.266 15 C 0.082 3.918 16 C -0.562 4.562 17 H 0.080 0.920 18 C -0.198 4.198 19 N -0.576 5.576 20 Si 0.796 3.204 21 H -0.187 1.187 22 H -0.205 1.205 23 H -0.200 1.200 24 C -0.077 4.077 25 C -0.054 4.054 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.146 0.854 41 H 0.100 0.900 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.023 0.977 45 H 0.082 0.918 46 H -0.027 1.027 47 H 0.027 0.973 48 H 0.074 0.926 49 H 0.033 0.967 50 H 0.098 0.902 51 H 0.126 0.874 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.905 4.265 28.513 31.192 hybrid contribution 0.019 -0.479 -1.317 1.401 sum -11.887 3.786 27.197 29.921 Atomic orbital electron populations 1.21670 0.94135 1.02313 1.02288 1.21815 0.97059 0.96748 1.01595 1.21545 0.78859 0.97207 1.03087 1.48118 1.06957 1.73138 1.06223 1.21954 0.97875 0.97853 0.84224 1.21925 1.01170 0.96383 0.98352 1.21684 1.00485 1.02349 0.96013 1.20968 0.90687 0.75281 0.83348 1.90689 1.70902 1.50122 1.32690 1.22089 0.91416 1.04906 0.90374 1.61771 1.14848 1.35399 1.14774 1.22079 1.00553 0.89791 0.92949 1.21859 0.87784 0.99464 0.96199 1.62263 1.13381 1.33394 1.17575 1.19365 0.93405 0.95593 0.83445 1.21473 1.41185 0.95940 0.97605 0.92032 1.25955 0.94725 1.01691 0.97407 1.70094 1.43548 1.34071 1.09840 0.85298 0.78057 0.78903 0.78143 1.18742 1.20463 1.19951 1.22208 1.00288 0.90220 0.94986 1.22142 0.85891 1.02285 0.95108 0.92180 0.90805 0.93517 0.94658 0.90516 0.87907 0.92521 0.88224 0.89237 0.92496 0.91806 0.91686 0.91937 0.92438 0.85383 0.89979 0.94357 0.90125 0.97703 0.91768 1.02718 0.97300 0.92606 0.96654 0.90216 0.87448 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.19 16 2 C -0.13 -2.12 6.26 30.60 0.19 -1.93 16 3 C 0.12 1.88 5.41 86.38 0.47 2.35 16 4 N -0.61 -10.52 2.47 -821.80 -2.03 -12.55 16 5 C 0.10 0.95 5.21 86.38 0.45 1.40 16 6 C -0.14 -1.18 6.26 30.59 0.19 -0.99 16 7 C -0.15 -0.85 9.91 71.98 0.71 -0.13 16 8 C 0.51 12.88 7.37 87.66 0.65 13.53 16 9 O -0.57 -20.24 13.92 -3.04 -0.04 -20.28 16 10 C 0.04 0.92 4.00 85.56 0.34 1.26 16 11 N -0.54 -16.86 4.45 -900.26 -4.00 -20.86 16 12 C 0.07 2.71 5.26 86.31 0.45 3.17 16 13 C 0.08 3.44 5.43 86.31 0.47 3.90 16 14 N -0.54 -25.58 4.70 -900.29 -4.23 -29.82 16 15 C 0.21 11.91 4.72 85.56 0.40 12.32 16 16 C -0.52 -31.31 8.47 25.60 0.22 -31.09 16 17 H 0.06 3.62 7.13 -2.91 -0.02 3.60 16 18 C 0.00 0.00 5.46 84.66 0.46 0.47 16 19 N -0.94 -58.41 13.29 21.45 0.28 -58.12 16 20 Si 0.97 45.96 29.54 68.60 2.03 47.98 16 21 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 24 C 0.05 1.99 5.61 86.31 0.48 2.47 16 25 C 0.07 2.10 5.61 86.31 0.48 2.58 16 26 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 1.06 8.07 -2.39 -0.02 1.04 16 32 H 0.06 1.26 7.42 -2.39 -0.02 1.24 16 33 H 0.10 0.56 8.07 -2.39 -0.02 0.54 16 34 H 0.09 0.69 6.45 -2.39 -0.02 0.68 16 35 H 0.06 0.61 7.20 -2.39 -0.02 0.59 16 36 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 40 H 0.13 2.03 7.04 -2.38 -0.02 2.02 16 41 H 0.08 1.45 7.39 -2.39 -0.02 1.44 16 42 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 3.08 5.85 -2.39 -0.01 3.07 16 44 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.06 3.11 6.79 -2.39 -0.02 3.10 16 46 H -0.04 -2.83 8.12 -2.39 -0.02 -2.85 16 47 H 0.01 0.54 8.03 -2.39 -0.02 0.52 16 48 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 49 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.08 2.92 8.07 -2.39 -0.02 2.90 16 51 H 0.11 2.33 8.07 -2.39 -0.02 2.31 16 52 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -76.70 402.41 -0.46 -77.16 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.85 Total: 8.38 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.69 Total: 8.11 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -9.98 Total: -121.35 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.04 Total: -20.28 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -76.70 -0.46 -77.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174431.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.720 kcal (2) G-P(sol) polarization free energy of solvation -76.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds