Wall clock time and date at job start Tue Mar 31 2020 10:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47188 * 2 1 4 4 C 1.53001 * 109.47355 * 60.00114 * 3 2 1 5 5 C 1.53001 * 109.47256 * 300.00087 * 3 2 1 6 6 N 1.46502 * 109.47358 * 179.97438 * 3 2 1 7 7 C 1.34769 * 120.00008 * 179.97438 * 6 3 2 8 8 O 1.21276 * 120.00458 * 0.02562 * 7 6 3 9 9 C 1.50707 * 119.99849 * 180.02562 * 7 6 3 10 10 H 1.09001 * 109.46991 * 46.38823 * 9 7 6 11 11 C 1.52996 * 109.47072 * 286.38906 * 9 7 6 12 12 N 1.46899 * 109.47277 * 166.38577 * 9 7 6 13 13 C 1.46961 * 110.99829 * 72.28910 * 12 9 7 14 14 C 1.53048 * 109.36239 * 183.18895 * 13 12 9 15 15 N 1.46954 * 109.36604 * 301.59409 * 14 13 12 16 16 C 1.46899 * 111.00207 * 183.18896 * 15 14 13 17 17 C 1.50696 * 109.47039 * 170.00406 * 16 15 14 18 18 H 1.07998 * 120.00083 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00050 * 180.02562 * 17 16 15 20 20 N 1.31523 * 119.99620 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00420 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47142 * 59.99338 * 21 19 17 23 23 H 1.48495 * 109.47510 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47056 * 299.99869 * 21 19 17 25 25 C 1.46961 * 110.87687 * 59.32440 * 15 14 13 26 26 C 1.46954 * 111.00207 * 196.08433 * 12 9 7 27 27 H 1.09000 * 109.47255 * 60.00220 * 1 2 3 28 28 H 1.09001 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47489 * 300.00011 * 1 2 3 30 30 H 1.08998 * 109.46585 * 239.99880 * 2 1 3 31 31 H 1.09003 * 109.47019 * 120.00254 * 2 1 3 32 32 H 1.09000 * 109.47543 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.46657 * 299.99769 * 4 3 2 34 34 H 1.09003 * 109.47390 * 59.99399 * 4 3 2 35 35 H 1.09003 * 109.47246 * 299.99764 * 5 3 2 36 36 H 1.08998 * 109.47005 * 59.99932 * 5 3 2 37 37 H 1.09001 * 109.47279 * 180.02562 * 5 3 2 38 38 H 0.97000 * 119.99574 * 359.97438 * 6 3 2 39 39 H 1.08999 * 109.47690 * 59.99513 * 11 9 7 40 40 H 1.09003 * 109.47449 * 179.97438 * 11 9 7 41 41 H 1.09001 * 109.47145 * 299.99823 * 11 9 7 42 42 H 1.09003 * 109.48985 * 63.22039 * 13 12 9 43 43 H 1.09000 * 109.50189 * 303.16655 * 13 12 9 44 44 H 1.09005 * 109.48753 * 181.62622 * 14 13 12 45 45 H 1.09001 * 109.49289 * 61.56772 * 14 13 12 46 46 H 1.08999 * 109.47003 * 290.00223 * 16 15 14 47 47 H 1.09000 * 109.47060 * 50.00467 * 16 15 14 48 48 H 0.97005 * 119.99548 * 180.02562 * 20 19 17 49 49 H 1.09003 * 109.48985 * 60.64632 * 25 15 14 50 50 H 1.09001 * 109.48721 * 180.71010 * 25 15 14 51 51 H 1.09001 * 109.49143 * 296.78556 * 26 12 9 52 52 H 1.09003 * 109.48383 * 56.82078 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1637 -1.2492 6 7 3.5050 1.4425 0.0006 7 6 4.1788 2.6096 0.0002 8 8 3.5725 3.6599 -0.0002 9 6 5.6859 2.6096 0.0003 10 1 6.0492 1.9005 -0.7435 11 6 6.1958 2.2031 1.3843 12 7 6.1756 3.9555 -0.3262 13 6 5.9576 4.8814 0.7941 14 6 6.4071 6.2863 0.3861 15 7 7.8255 6.2522 0.0033 16 6 8.3152 7.5982 -0.3232 17 6 9.8146 7.5652 -0.4702 18 1 10.3502 6.6373 -0.3343 19 6 10.5028 8.7198 -0.7772 20 7 9.8505 9.8499 -0.9423 21 14 12.3614 8.6792 -0.9588 22 1 12.7320 7.7403 -2.0480 23 1 12.8565 10.0397 -1.2889 24 1 12.9735 8.2250 0.3158 25 6 8.0435 5.3264 -1.1170 26 6 7.5940 3.9215 -0.7090 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8930 3.1915 1.2490 33 1 0.4400 2.1637 1.2492 34 1 1.8933 1.6499 2.1393 35 1 1.8933 1.6499 -2.1393 36 1 0.4400 2.1637 -1.2492 37 1 1.8937 3.1912 -1.2495 38 1 3.9900 0.6024 0.0013 39 1 5.8325 1.2045 1.6266 40 1 7.2858 2.2027 1.3843 41 1 5.8325 2.9123 2.1281 42 1 6.5359 4.5508 1.6569 43 1 4.8985 4.8986 1.0511 44 1 6.2732 6.9690 1.2253 45 1 5.8102 6.6279 -0.4596 46 1 7.8656 7.9314 -1.2586 47 1 8.0436 8.2875 0.4763 48 1 10.3346 10.6622 -1.1587 49 1 7.4652 5.6570 -1.9798 50 1 9.1027 5.3092 -1.3737 51 1 8.1908 3.5799 0.1367 52 1 7.7279 3.2385 -1.5479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611176163.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:54 Heat of formation + Delta-G solvation = -27.709984 kcal Electronic energy + Delta-G solvation = -27437.022174 eV Core-core repulsion = 23857.485315 eV Total energy + Delta-G solvation = -3579.536859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.58102 -38.79616 -37.06466 -35.26179 -33.21804 -32.51325 -30.75922 -30.29353 -29.52698 -27.47966 -27.29600 -25.55010 -24.85347 -23.39209 -22.92949 -21.35226 -20.13934 -19.57847 -18.77681 -17.22935 -16.47509 -16.20167 -15.54962 -15.25940 -15.04339 -14.79815 -14.50314 -14.31796 -14.20046 -13.92350 -13.62700 -13.41425 -13.40121 -12.97691 -12.75068 -12.52760 -12.32280 -12.24523 -12.08686 -11.91063 -11.86644 -11.61443 -11.51518 -11.44410 -11.08934 -11.07167 -10.95004 -10.79066 -10.63970 -10.48226 -10.35588 -10.26971 -9.71319 -9.35773 -9.17512 -9.05114 -8.38773 -8.00379 -7.13409 -5.97528 -3.98953 2.67991 2.93731 3.35924 3.39908 3.42603 4.15487 4.34406 4.46199 4.54623 4.64548 4.77677 4.91278 4.96724 5.03583 5.06843 5.08423 5.21880 5.37675 5.41692 5.47298 5.50489 5.53576 5.54163 5.54677 5.63067 5.68865 5.70883 5.77686 5.78954 5.81863 5.94010 5.99908 6.06507 6.15062 6.19681 6.23183 6.39342 6.49462 6.61202 6.69621 6.74497 7.18529 7.27016 7.43434 7.46713 7.50769 7.85368 8.16527 8.28397 8.29704 8.62615 9.08353 9.64760 11.13285 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.036915 B = 0.002532 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.314874 B =11055.067815 C =11328.061909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.175 3.825 4 C -0.165 4.165 5 C -0.165 4.165 6 N -0.731 5.731 7 C 0.525 3.475 8 O -0.512 6.512 9 C 0.063 3.937 10 H 0.098 0.902 11 C -0.179 4.179 12 N -0.516 5.516 13 C 0.057 3.943 14 C 0.059 3.941 15 N -0.539 5.539 16 C 0.194 3.806 17 C -0.506 4.506 18 H 0.062 0.938 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.069 3.931 26 C 0.058 3.942 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.396 0.604 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.031 0.969 46 H -0.009 1.009 47 H 0.029 0.971 48 H 0.261 0.739 49 H 0.028 0.972 50 H 0.086 0.914 51 H 0.041 0.959 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.342 -22.883 2.758 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.089 3.911 4 C -0.223 4.223 5 C -0.223 4.223 6 N -0.384 5.384 7 C 0.311 3.689 8 O -0.386 6.386 9 C -0.049 4.049 10 H 0.116 0.884 11 C -0.239 4.239 12 N -0.241 5.241 13 C -0.071 4.071 14 C -0.070 4.070 15 N -0.264 5.264 16 C 0.068 3.932 17 C -0.545 4.545 18 H 0.080 0.920 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.202 1.202 25 C -0.060 4.060 26 C -0.070 4.070 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.229 0.771 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.009 0.991 47 H 0.047 0.953 48 H 0.071 0.929 49 H 0.047 0.953 50 H 0.104 0.896 51 H 0.059 0.941 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.754 -21.869 2.707 27.682 hybrid contribution 1.289 -0.397 -0.167 1.359 sum -15.465 -22.266 2.540 27.229 Atomic orbital electron populations 1.21854 0.94662 1.01888 1.02621 1.21763 0.97070 0.95096 1.02365 1.20285 0.79332 0.95272 0.96191 1.22271 1.01058 1.02755 0.96195 1.22270 1.00950 1.02918 0.96179 1.46176 1.06571 1.08564 1.77091 1.20524 0.89592 0.83510 0.75266 1.90612 1.69607 1.31141 1.47241 1.21608 0.91979 0.93631 0.97713 0.88401 1.22370 1.02582 1.01755 0.97146 1.62080 1.18435 1.05095 1.38455 1.22361 1.01256 0.92300 0.91147 1.22040 0.90149 0.95102 0.99752 1.62300 1.14556 1.12426 1.37159 1.19686 0.95324 0.83148 0.94992 1.21119 0.91624 0.94861 1.46892 0.92026 1.25003 0.98590 0.95454 0.95657 1.69962 1.35707 0.99412 1.48718 0.86563 0.85401 0.76894 0.78529 1.20318 1.21407 1.20232 1.21964 1.01213 0.90300 0.92537 1.22302 0.86639 0.98703 0.99373 0.92026 0.92518 0.92069 0.91450 0.91499 0.90218 0.91812 0.92960 0.92904 0.91859 0.90077 0.77081 0.92106 0.91068 0.91288 0.94435 0.89395 0.91244 0.95123 0.99101 0.95281 0.92916 0.95330 0.89574 0.94115 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.21 37.16 0.34 -0.47 16 2 C -0.12 -0.73 5.10 -26.74 -0.14 -0.87 16 3 C 0.17 1.46 0.83 -131.82 -0.11 1.35 16 4 C -0.16 -1.51 8.05 37.16 0.30 -1.22 16 5 C -0.17 -1.59 8.05 37.16 0.30 -1.29 16 6 N -0.73 -6.32 5.11 -47.61 -0.24 -6.56 16 7 C 0.53 6.35 6.40 -10.99 -0.07 6.28 16 8 O -0.51 -8.02 10.54 5.56 0.06 -7.97 16 9 C 0.06 0.74 2.70 -68.86 -0.19 0.55 16 10 H 0.10 0.96 7.91 -51.93 -0.41 0.55 16 11 C -0.18 -1.81 8.29 37.16 0.31 -1.50 16 12 N -0.52 -8.04 4.40 -227.87 -1.00 -9.04 16 13 C 0.06 0.96 4.43 -3.77 -0.02 0.94 16 14 C 0.06 1.18 5.61 -3.77 -0.02 1.16 16 15 N -0.54 -12.23 4.70 -235.91 -1.11 -13.34 16 16 C 0.19 5.25 4.72 -4.98 -0.02 5.23 16 17 C -0.51 -14.47 8.47 -34.44 -0.29 -14.77 16 18 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 19 C 0.05 1.56 5.46 -17.81 -0.10 1.47 16 20 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 21 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.07 1.39 5.43 -3.77 -0.02 1.37 16 26 C 0.06 0.92 5.40 -3.77 -0.02 0.90 16 27 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.97 6.17 -51.93 -0.32 0.65 16 33 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.52 6.43 -51.93 -0.33 0.18 16 37 H 0.08 1.04 6.17 -51.93 -0.32 0.72 16 38 H 0.40 2.37 8.47 -40.82 -0.35 2.03 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.75 7.02 -51.93 -0.36 0.38 16 41 H 0.07 0.79 6.39 -51.93 -0.33 0.46 16 42 H 0.04 0.62 6.41 -51.93 -0.33 0.29 16 43 H 0.09 1.50 5.97 -51.93 -0.31 1.19 16 44 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 47 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 48 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.09 1.83 6.79 -51.93 -0.35 1.48 16 51 H 0.04 0.64 7.02 -51.93 -0.36 0.28 16 52 H 0.07 0.94 8.02 -51.93 -0.42 0.52 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -32.41 383.86 -9.89 -42.30 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -9.35 Total: -0.66 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 0.25 Total: -0.87 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -1.62 Total: -55.47 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.06 Total: -7.97 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.41 -9.89 -42.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611176163.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.591 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds