Wall clock time and date at job start Tue Mar 31 2020 10:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47188 * 2 1 4 4 C 1.53001 * 109.47355 * 60.00114 * 3 2 1 5 5 C 1.53001 * 109.47256 * 300.00087 * 3 2 1 6 6 N 1.46502 * 109.47358 * 179.97438 * 3 2 1 7 7 C 1.34769 * 120.00008 * 179.97438 * 6 3 2 8 8 O 1.21276 * 120.00458 * 0.02562 * 7 6 3 9 9 C 1.50707 * 119.99849 * 180.02562 * 7 6 3 10 10 H 1.09001 * 109.46991 * 46.38823 * 9 7 6 11 11 C 1.52996 * 109.47072 * 286.38906 * 9 7 6 12 12 N 1.46899 * 109.47277 * 166.38577 * 9 7 6 13 13 C 1.46961 * 110.99829 * 72.28910 * 12 9 7 14 14 C 1.53048 * 109.36239 * 183.18895 * 13 12 9 15 15 N 1.46954 * 109.36604 * 301.59409 * 14 13 12 16 16 C 1.46899 * 111.00207 * 183.18896 * 15 14 13 17 17 C 1.50696 * 109.47039 * 170.00406 * 16 15 14 18 18 H 1.07998 * 120.00083 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00050 * 180.02562 * 17 16 15 20 20 N 1.31523 * 119.99620 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00420 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47142 * 59.99338 * 21 19 17 23 23 H 1.48495 * 109.47510 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47056 * 299.99869 * 21 19 17 25 25 C 1.46961 * 110.87687 * 59.32440 * 15 14 13 26 26 C 1.46954 * 111.00207 * 196.08433 * 12 9 7 27 27 H 1.09000 * 109.47255 * 60.00220 * 1 2 3 28 28 H 1.09001 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47489 * 300.00011 * 1 2 3 30 30 H 1.08998 * 109.46585 * 239.99880 * 2 1 3 31 31 H 1.09003 * 109.47019 * 120.00254 * 2 1 3 32 32 H 1.09000 * 109.47543 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.46657 * 299.99769 * 4 3 2 34 34 H 1.09003 * 109.47390 * 59.99399 * 4 3 2 35 35 H 1.09003 * 109.47246 * 299.99764 * 5 3 2 36 36 H 1.08998 * 109.47005 * 59.99932 * 5 3 2 37 37 H 1.09001 * 109.47279 * 180.02562 * 5 3 2 38 38 H 0.97000 * 119.99574 * 359.97438 * 6 3 2 39 39 H 1.08999 * 109.47690 * 59.99513 * 11 9 7 40 40 H 1.09003 * 109.47449 * 179.97438 * 11 9 7 41 41 H 1.09001 * 109.47145 * 299.99823 * 11 9 7 42 42 H 1.09003 * 109.48985 * 63.22039 * 13 12 9 43 43 H 1.09000 * 109.50189 * 303.16655 * 13 12 9 44 44 H 1.09005 * 109.48753 * 181.62622 * 14 13 12 45 45 H 1.09001 * 109.49289 * 61.56772 * 14 13 12 46 46 H 1.08999 * 109.47003 * 290.00223 * 16 15 14 47 47 H 1.09000 * 109.47060 * 50.00467 * 16 15 14 48 48 H 0.97005 * 119.99548 * 180.02562 * 20 19 17 49 49 H 1.09003 * 109.48985 * 60.64632 * 25 15 14 50 50 H 1.09001 * 109.48721 * 180.71010 * 25 15 14 51 51 H 1.09001 * 109.49143 * 296.78556 * 26 12 9 52 52 H 1.09003 * 109.48383 * 56.82078 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1637 1.2492 5 6 1.5300 2.1637 -1.2492 6 7 3.5050 1.4425 0.0006 7 6 4.1788 2.6096 0.0002 8 8 3.5725 3.6599 -0.0002 9 6 5.6859 2.6096 0.0003 10 1 6.0492 1.9005 -0.7435 11 6 6.1958 2.2031 1.3843 12 7 6.1756 3.9555 -0.3262 13 6 5.9576 4.8814 0.7941 14 6 6.4071 6.2863 0.3861 15 7 7.8255 6.2522 0.0033 16 6 8.3152 7.5982 -0.3232 17 6 9.8146 7.5652 -0.4702 18 1 10.3502 6.6373 -0.3343 19 6 10.5028 8.7198 -0.7772 20 7 9.8505 9.8499 -0.9423 21 14 12.3614 8.6792 -0.9588 22 1 12.7320 7.7403 -2.0480 23 1 12.8565 10.0397 -1.2889 24 1 12.9735 8.2250 0.3158 25 6 8.0435 5.3264 -1.1170 26 6 7.5940 3.9215 -0.7090 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8930 3.1915 1.2490 33 1 0.4400 2.1637 1.2492 34 1 1.8933 1.6499 2.1393 35 1 1.8933 1.6499 -2.1393 36 1 0.4400 2.1637 -1.2492 37 1 1.8937 3.1912 -1.2495 38 1 3.9900 0.6024 0.0013 39 1 5.8325 1.2045 1.6266 40 1 7.2858 2.2027 1.3843 41 1 5.8325 2.9123 2.1281 42 1 6.5359 4.5508 1.6569 43 1 4.8985 4.8986 1.0511 44 1 6.2732 6.9690 1.2253 45 1 5.8102 6.6279 -0.4596 46 1 7.8656 7.9314 -1.2586 47 1 8.0436 8.2875 0.4763 48 1 10.3346 10.6622 -1.1587 49 1 7.4652 5.6570 -1.9798 50 1 9.1027 5.3092 -1.3737 51 1 8.1908 3.5799 0.1367 52 1 7.7279 3.2385 -1.5479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611176163.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:53 Heat of formation + Delta-G solvation = -51.818384 kcal Electronic energy + Delta-G solvation = -27438.067593 eV Core-core repulsion = 23857.485315 eV Total energy + Delta-G solvation = -3580.582278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.53293 -40.04500 -38.07400 -36.70571 -34.73665 -33.90082 -31.96975 -31.75416 -30.29767 -29.05922 -28.22739 -26.90761 -25.79816 -24.59410 -24.39509 -23.16321 -21.15251 -20.34325 -20.17238 -18.53596 -18.03917 -17.47555 -16.84266 -16.33334 -16.18428 -15.90792 -15.74112 -15.67325 -15.52670 -15.26959 -14.87006 -14.59534 -14.52267 -14.14239 -13.96740 -13.58051 -13.47052 -13.20245 -13.09243 -12.96746 -12.93188 -12.78778 -12.67392 -12.58577 -12.54239 -12.44765 -12.18771 -12.12464 -11.97463 -11.90135 -11.58556 -11.54155 -11.49366 -11.23634 -10.61755 -10.30825 -9.97348 -9.23580 -9.03924 -8.20487 -6.31853 1.41097 1.45458 1.53303 1.76878 2.13048 2.40413 3.01309 3.11221 3.29229 3.69545 3.88353 3.91425 3.99292 4.12024 4.15228 4.18494 4.21954 4.37246 4.39189 4.47343 4.47667 4.53855 4.65558 4.69548 4.70796 4.79523 4.82189 4.84916 4.94806 4.98541 4.99752 5.00453 5.05001 5.06861 5.15501 5.16080 5.17164 5.23583 5.28170 5.28971 5.49211 5.53629 5.62884 5.73255 5.99835 6.01671 6.10377 6.33606 6.58899 6.75237 6.83762 7.37860 7.45285 8.90974 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.036915 B = 0.002532 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.314874 B =11055.067815 C =11328.061909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C 0.173 3.827 4 C -0.161 4.161 5 C -0.162 4.162 6 N -0.714 5.714 7 C 0.522 3.478 8 O -0.555 6.555 9 C 0.064 3.936 10 H 0.128 0.872 11 C -0.173 4.173 12 N -0.534 5.534 13 C 0.076 3.924 14 C 0.058 3.942 15 N -0.539 5.539 16 C 0.208 3.792 17 C -0.522 4.522 18 H 0.067 0.933 19 C -0.003 4.003 20 N -0.937 5.937 21 Si 0.976 3.024 22 H -0.264 1.264 23 H -0.284 1.284 24 H -0.266 1.266 25 C 0.067 3.933 26 C 0.071 3.929 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.413 0.587 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.086 0.914 44 H 0.064 0.936 45 H 0.008 0.992 46 H -0.045 1.045 47 H 0.000 1.000 48 H 0.264 0.736 49 H 0.008 0.992 50 H 0.075 0.925 51 H 0.050 0.950 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.608 -26.797 3.043 31.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C 0.088 3.912 4 C -0.219 4.219 5 C -0.220 4.220 6 N -0.367 5.367 7 C 0.308 3.692 8 O -0.432 6.432 9 C -0.048 4.048 10 H 0.145 0.855 11 C -0.231 4.231 12 N -0.259 5.259 13 C -0.052 4.052 14 C -0.070 4.070 15 N -0.264 5.264 16 C 0.082 3.918 17 C -0.560 4.560 18 H 0.085 0.915 19 C -0.201 4.201 20 N -0.578 5.578 21 Si 0.800 3.200 22 H -0.189 1.189 23 H -0.210 1.210 24 H -0.191 1.191 25 C -0.061 4.061 26 C -0.057 4.057 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.249 0.751 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.027 0.973 46 H -0.027 1.027 47 H 0.018 0.982 48 H 0.073 0.927 49 H 0.027 0.973 50 H 0.093 0.907 51 H 0.068 0.932 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.034 -25.861 2.998 30.575 hybrid contribution 0.936 0.820 -0.275 1.275 sum -15.098 -25.041 2.722 29.367 Atomic orbital electron populations 1.21871 0.94295 1.02644 1.02358 1.21717 0.97289 0.92900 1.03526 1.20371 0.78990 0.96893 0.94984 1.22218 1.01810 1.00861 0.97030 1.22219 1.01767 1.00858 0.97142 1.46028 1.06853 1.08348 1.75490 1.20680 0.89869 0.83760 0.74889 1.90622 1.70359 1.32887 1.49350 1.21740 0.91666 0.91661 0.99697 0.85474 1.22311 1.02503 1.03064 0.95262 1.61949 1.18263 1.07425 1.38259 1.22082 1.00925 0.90386 0.91803 1.22096 0.88489 0.97808 0.98656 1.62270 1.15926 1.10274 1.37949 1.19354 0.95252 0.85134 0.92066 1.21402 0.92146 0.95330 1.47150 0.91451 1.26027 1.04352 0.94817 0.94872 1.70116 1.38047 1.00232 1.49369 0.85339 0.78320 0.77236 0.79124 1.18918 1.20985 1.19098 1.22015 1.00414 0.92518 0.91175 1.22170 0.86886 0.95751 1.00869 0.92421 0.91263 0.92265 0.90402 0.90173 0.93632 0.90693 0.92185 0.92526 0.90651 0.93766 0.75068 0.88845 0.90981 0.93070 0.93691 0.89603 0.91754 0.97320 1.02742 0.98201 0.92687 0.97326 0.90677 0.93219 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.21 71.98 0.66 -0.57 16 2 C -0.12 -0.98 5.10 30.59 0.16 -0.83 16 3 C 0.17 2.57 0.83 3.60 0.00 2.57 16 4 C -0.16 -2.82 8.05 71.98 0.58 -2.24 16 5 C -0.16 -3.01 8.05 71.98 0.58 -2.43 16 6 N -0.71 -10.58 5.11 -422.93 -2.16 -12.74 16 7 C 0.52 11.88 6.40 87.66 0.56 12.44 16 8 O -0.55 -17.70 10.54 -3.02 -0.03 -17.73 16 9 C 0.06 1.33 2.70 44.17 0.12 1.45 16 10 H 0.13 1.93 7.91 -2.39 -0.02 1.91 16 11 C -0.17 -2.93 8.29 71.98 0.60 -2.33 16 12 N -0.53 -16.10 4.40 -874.86 -3.85 -19.94 16 13 C 0.08 2.59 4.43 86.31 0.38 2.97 16 14 C 0.06 2.48 5.61 86.31 0.48 2.96 16 15 N -0.54 -25.44 4.70 -900.29 -4.23 -29.67 16 16 C 0.21 11.96 4.72 85.56 0.40 12.36 16 17 C -0.52 -30.60 8.47 25.60 0.22 -30.38 16 18 H 0.07 3.79 7.13 -2.91 -0.02 3.77 16 19 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 20 N -0.94 -58.53 13.29 21.45 0.28 -58.24 16 21 Si 0.98 45.03 29.54 68.60 2.03 47.06 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 C 0.07 2.78 5.43 86.31 0.47 3.25 16 26 C 0.07 2.13 5.40 86.31 0.47 2.60 16 27 H 0.06 0.51 6.43 -2.39 -0.02 0.50 16 28 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.50 6.43 -2.39 -0.02 0.49 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 32 H 0.04 1.14 6.17 -2.39 -0.01 1.12 16 33 H 0.07 1.10 6.43 -2.39 -0.02 1.09 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.17 6.43 -2.39 -0.02 1.15 16 37 H 0.04 1.17 6.17 -2.39 -0.01 1.16 16 38 H 0.41 3.32 8.47 -92.71 -0.79 2.53 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.25 7.02 -2.39 -0.02 1.23 16 41 H 0.05 1.07 6.39 -2.39 -0.02 1.06 16 42 H 0.05 1.47 6.41 -2.39 -0.02 1.45 16 43 H 0.09 3.01 5.97 -2.39 -0.01 3.00 16 44 H 0.06 2.73 8.07 -2.38 -0.02 2.71 16 45 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 46 H -0.05 -2.85 8.12 -2.39 -0.02 -2.87 16 47 H 0.00 -0.01 8.03 -2.39 -0.02 -0.03 16 48 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 49 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 50 H 0.07 3.23 6.79 -2.39 -0.02 3.21 16 51 H 0.05 1.43 7.02 -2.39 -0.02 1.42 16 52 H 0.10 2.43 8.02 -2.39 -0.02 2.41 16 Total: -1.00 -74.55 383.86 -1.71 -76.26 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.11 Total: 12.90 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 6.14 Total: 2.11 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -9.95 Total: -120.59 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.03 Total: -17.73 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -74.55 -1.71 -76.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611176163.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.441 kcal (2) G-P(sol) polarization free energy of solvation -74.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds