Wall clock time and date at job start Tue Mar 31 2020 10:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47201 * 2 1 4 4 C 1.53000 * 109.46946 * 60.00018 * 3 2 1 5 5 C 1.53001 * 109.47231 * 300.00184 * 3 2 1 6 6 N 1.46900 * 109.47186 * 179.97438 * 3 2 1 7 7 C 1.46896 * 110.99927 * 177.83136 * 6 3 2 8 8 H 1.09001 * 109.47309 * 9.14329 * 7 6 3 9 9 C 1.53006 * 109.47342 * 249.14498 * 7 6 3 10 10 C 1.50701 * 109.47096 * 129.14704 * 7 6 3 11 11 O 1.21273 * 120.00190 * 359.97438 * 10 7 6 12 12 N 1.34782 * 119.99690 * 180.02562 * 10 7 6 13 13 C 1.46503 * 119.99388 * 180.27524 * 12 10 7 14 14 C 1.53039 * 109.45573 * 274.78616 * 13 12 10 15 15 C 1.53201 * 109.31001 * 178.61846 * 14 13 12 16 16 N 1.46931 * 108.77423 * 54.63470 * 15 14 13 17 17 C 1.36932 * 120.62663 * 126.41317 * 16 15 14 18 18 H 1.07999 * 120.00171 * 331.71077 * 17 16 15 19 19 C 1.38811 * 119.99766 * 151.70482 * 17 16 15 20 20 N 1.31624 * 120.00295 * 159.49698 * 19 17 16 21 21 Si 1.86800 * 119.99981 * 339.49748 * 19 17 16 22 22 H 1.48498 * 109.47340 * 93.82769 * 21 19 17 23 23 H 1.48506 * 109.47137 * 213.82288 * 21 19 17 24 24 H 1.48500 * 109.47232 * 333.82505 * 21 19 17 25 25 C 1.46919 * 118.73962 * 306.39115 * 16 15 14 26 26 C 1.53042 * 109.45579 * 154.72081 * 13 12 10 27 27 H 1.09006 * 109.47052 * 60.00207 * 1 2 3 28 28 H 1.09004 * 109.46892 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47523 * 300.00054 * 1 2 3 30 30 H 1.09001 * 109.47523 * 239.99946 * 2 1 3 31 31 H 1.08996 * 109.47442 * 120.00100 * 2 1 3 32 32 H 1.08997 * 109.47203 * 173.98966 * 4 3 2 33 33 H 1.09001 * 109.47062 * 293.98753 * 4 3 2 34 34 H 1.08996 * 109.47092 * 53.98268 * 4 3 2 35 35 H 1.09004 * 109.46863 * 301.96567 * 5 3 2 36 36 H 1.09000 * 109.47093 * 61.96005 * 5 3 2 37 37 H 1.08994 * 109.47382 * 181.96829 * 5 3 2 38 38 H 1.00903 * 111.00277 * 301.78570 * 6 3 2 39 39 H 1.09001 * 109.46776 * 303.97336 * 9 7 6 40 40 H 1.09002 * 109.46788 * 63.97406 * 9 7 6 41 41 H 1.08997 * 109.47161 * 183.97318 * 9 7 6 42 42 H 0.96996 * 120.00175 * 359.97438 * 12 10 7 43 43 H 1.08996 * 109.46147 * 34.74820 * 13 12 10 44 44 H 1.08998 * 109.49852 * 298.56349 * 14 13 12 45 45 H 1.08997 * 109.49843 * 58.66794 * 14 13 12 46 46 H 1.09002 * 109.58198 * 294.84775 * 15 14 13 47 47 H 1.08996 * 109.70176 * 174.49288 * 15 14 13 48 48 H 0.96990 * 120.00432 * 180.02562 * 20 19 17 49 49 H 1.09000 * 109.58893 * 293.82348 * 25 16 15 50 50 H 1.08996 * 109.70473 * 173.46498 * 25 16 15 51 51 H 1.08999 * 109.49817 * 301.33160 * 26 13 12 52 52 H 1.09000 * 109.49557 * 61.40264 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5299 2.1638 -1.2492 6 7 3.5090 1.4425 0.0006 7 6 4.0354 2.8129 -0.0513 8 1 3.2183 3.5215 0.0849 9 6 4.6982 3.0537 -1.4091 10 6 5.0524 3.0022 1.0447 11 8 5.3126 2.0860 1.7953 12 7 5.6719 4.1902 1.1912 13 6 6.6649 4.3723 2.2528 14 6 5.9556 4.7525 3.5545 15 6 6.9938 4.9083 4.6703 16 7 8.0143 5.8718 4.2355 17 6 8.3259 6.9559 5.0117 18 1 7.5827 7.3795 5.6711 19 6 9.5969 7.5106 4.9513 20 7 9.7954 8.7472 5.3560 21 14 11.0259 6.5018 4.2955 22 1 11.1979 6.7716 2.8453 23 1 12.2681 6.8745 5.0189 24 1 10.7477 5.0576 4.5008 25 6 8.6945 5.6496 2.9523 26 6 7.6373 5.4854 1.8558 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.9785 3.1556 1.3047 33 1 0.4453 2.2579 1.1971 34 1 1.8026 1.5915 2.1359 35 1 1.8642 1.6300 -2.1389 36 1 0.4405 2.1944 -1.2318 37 1 1.9218 3.1807 -1.2671 38 1 3.8703 0.9465 0.8016 39 1 5.4686 2.3009 -1.5759 40 1 3.9477 2.9863 -2.1968 41 1 5.1504 4.0454 -1.4220 42 1 5.4635 4.9232 0.5911 43 1 7.2161 3.4432 2.3977 44 1 5.4245 5.6944 3.4177 45 1 5.2463 3.9701 3.8242 46 1 7.4625 3.9448 4.8703 47 1 6.5085 5.2735 5.5754 48 1 10.6834 9.1349 5.3134 49 1 9.3019 4.7465 3.0123 50 1 9.3311 6.5035 2.7211 51 1 8.1249 5.2246 0.9164 52 1 7.0902 6.4203 1.7345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613942103.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:35 Heat of formation + Delta-G solvation = -24.576828 kcal Electronic energy + Delta-G solvation = -27427.376877 eV Core-core repulsion = 23847.975882 eV Total energy + Delta-G solvation = -3579.400995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.43776 -38.73746 -37.53794 -34.65785 -34.20146 -32.21787 -30.72655 -30.43683 -29.77161 -28.80762 -27.52576 -25.36998 -24.62176 -23.32519 -22.77409 -21.66132 -20.14391 -19.55799 -19.16958 -17.76940 -16.83590 -16.33883 -15.94039 -15.36189 -15.11519 -14.90541 -14.49912 -14.27961 -14.18653 -13.86562 -13.70248 -13.40146 -13.20401 -12.95887 -12.73833 -12.66837 -12.50033 -12.43818 -12.21616 -12.16596 -12.01170 -11.82028 -11.63745 -11.46975 -11.45318 -11.01435 -10.95919 -10.85026 -10.68727 -10.59348 -10.32517 -10.17680 -9.91231 -9.66990 -9.49985 -8.88493 -8.70529 -8.63579 -7.00531 -5.97518 -3.34212 2.60061 3.14980 3.29704 3.47502 3.51010 3.85432 4.45672 4.50768 4.58839 4.60690 4.83651 4.88879 4.93405 5.00476 5.06507 5.12216 5.17415 5.21113 5.30544 5.31526 5.34171 5.37237 5.54497 5.56190 5.59403 5.63818 5.68772 5.75045 5.78526 5.79056 5.83544 5.96598 6.00890 6.06211 6.07193 6.10884 6.14060 6.28837 6.35806 6.55656 6.60693 6.62825 6.68054 6.79990 6.89188 7.22846 7.55696 7.94243 8.20521 8.30758 8.91420 9.69299 10.07255 11.18418 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.031872 B = 0.002732 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.305609 B =10246.794127 C =10532.584681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C 0.107 3.893 4 C -0.184 4.184 5 C -0.143 4.143 6 N -0.664 5.664 7 C 0.060 3.940 8 H 0.088 0.912 9 C -0.134 4.134 10 C 0.501 3.499 11 O -0.540 6.540 12 N -0.719 5.719 13 C 0.150 3.850 14 C -0.140 4.140 15 C 0.151 3.849 16 N -0.606 5.606 17 C -0.260 4.260 18 H 0.085 0.915 19 C 0.024 3.976 20 N -0.908 5.908 21 Si 0.881 3.119 22 H -0.288 1.288 23 H -0.302 1.302 24 H -0.269 1.269 25 C 0.130 3.870 26 C -0.140 4.140 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.359 0.641 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.397 0.603 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.025 0.975 47 H 0.066 0.934 48 H 0.263 0.737 49 H 0.027 0.973 50 H 0.076 0.924 51 H 0.059 0.941 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.223 -13.295 -15.203 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C 0.016 3.984 4 C -0.243 4.243 5 C -0.200 4.200 6 N -0.301 5.301 7 C -0.053 4.053 8 H 0.105 0.895 9 C -0.193 4.193 10 C 0.286 3.714 11 O -0.417 6.417 12 N -0.369 5.369 13 C 0.046 3.954 14 C -0.180 4.180 15 C 0.024 3.976 16 N -0.330 5.330 17 C -0.388 4.388 18 H 0.103 0.897 19 C -0.175 4.175 20 N -0.551 5.551 21 Si 0.711 3.289 22 H -0.216 1.216 23 H -0.230 1.230 24 H -0.194 1.194 25 C 0.004 3.996 26 C -0.180 4.180 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.184 0.816 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.231 0.769 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.043 0.957 47 H 0.084 0.916 48 H 0.073 0.927 49 H 0.045 0.955 50 H 0.095 0.905 51 H 0.078 0.922 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.841 -13.924 -15.246 26.644 hybrid contribution 0.642 0.297 0.305 0.770 sum -16.199 -13.627 -14.940 25.910 Atomic orbital electron populations 1.21878 0.95578 1.01659 1.02037 1.21481 0.95570 0.95001 1.02635 1.21034 0.87197 0.95703 0.94480 1.22642 1.01997 1.00896 0.98742 1.22011 1.00624 1.00068 0.97320 1.60857 1.06350 1.12730 1.50148 1.21621 0.96184 0.92905 0.94609 0.89461 1.21804 1.01154 1.01365 0.94947 1.21004 0.82392 0.82662 0.85328 1.90658 1.64344 1.41059 1.45674 1.46266 1.42475 1.13541 1.34654 1.21012 0.88559 0.99390 0.86420 1.22366 0.99061 1.00758 0.95824 1.20894 0.89391 0.92419 0.94867 1.44391 1.44243 1.26726 1.17600 1.18917 0.96050 1.03217 1.20662 0.89697 1.25309 0.97286 0.96263 0.98681 1.69832 1.22426 1.12227 1.50585 0.86961 0.82871 0.81706 0.77341 1.21612 1.23046 1.19439 1.21286 0.93479 0.99609 0.85236 1.22345 0.98272 0.97968 0.99425 0.92368 0.92741 0.92528 0.91114 0.92017 0.92710 0.91747 0.92319 0.91788 0.92070 0.92612 0.81609 0.91613 0.91406 0.92338 0.76859 0.89920 0.91881 0.92451 0.95743 0.91597 0.92744 0.95492 0.90547 0.92216 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.21 37.15 0.34 -0.63 16 2 C -0.11 -0.84 5.27 -26.73 -0.14 -0.98 16 3 C 0.11 0.89 0.72 -131.60 -0.09 0.80 16 4 C -0.18 -1.60 7.91 37.16 0.29 -1.31 16 5 C -0.14 -1.02 7.34 37.16 0.27 -0.74 16 6 N -0.66 -6.80 6.01 -94.24 -0.57 -7.36 16 7 C 0.06 0.60 1.90 -68.86 -0.13 0.47 16 8 H 0.09 0.78 4.78 -51.93 -0.25 0.53 16 9 C -0.13 -1.14 9.30 37.16 0.35 -0.79 16 10 C 0.50 6.60 7.19 -10.98 -0.08 6.52 16 11 O -0.54 -9.08 14.97 5.56 0.08 -8.99 16 12 N -0.72 -9.08 4.95 -53.76 -0.27 -9.34 16 13 C 0.15 2.38 2.42 -67.89 -0.16 2.22 16 14 C -0.14 -2.38 5.65 -26.61 -0.15 -2.53 16 15 C 0.15 3.03 6.52 -3.70 -0.02 3.01 16 16 N -0.61 -14.28 2.75 -172.32 -0.47 -14.76 16 17 C -0.26 -7.22 10.03 -15.06 -0.15 -7.37 16 18 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 19 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 20 N -0.91 -27.64 13.97 55.49 0.78 -26.86 16 21 Si 0.88 22.24 24.37 -169.99 -4.14 18.10 16 22 H -0.29 -6.97 6.67 56.52 0.38 -6.59 16 23 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 24 H -0.27 -6.74 6.60 56.52 0.37 -6.36 16 25 C 0.13 2.78 4.20 -3.71 -0.02 2.76 16 26 C -0.14 -2.34 5.55 -26.61 -0.15 -2.48 16 27 H 0.06 0.33 6.47 -51.93 -0.34 0.00 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.36 6.57 -51.93 -0.34 0.02 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.51 6.20 -51.93 -0.32 0.19 16 33 H 0.06 0.48 6.77 -51.93 -0.35 0.13 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.38 6.54 -51.93 -0.34 0.04 16 37 H 0.05 0.39 5.98 -51.93 -0.31 0.08 16 38 H 0.36 4.41 6.84 -39.29 -0.27 4.14 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.50 7.17 -51.93 -0.37 0.13 16 41 H 0.06 0.43 7.45 -51.93 -0.39 0.04 16 42 H 0.40 3.99 7.97 -40.82 -0.33 3.66 16 43 H 0.08 1.48 7.57 -51.93 -0.39 1.08 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.03 0.58 7.04 -51.93 -0.37 0.22 16 50 H 0.08 1.77 4.63 -51.93 -0.24 1.53 16 51 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 52 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -31.21 381.67 -8.05 -39.26 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -9.28 Total: 4.69 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 0.07 Total: -0.48 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.53 Total: -58.33 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.10 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.21 -8.05 -39.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613942103.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.685 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds