Wall clock time and date at job start Tue Mar 31 2020 10:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47201 * 2 1 4 4 C 1.53000 * 109.46946 * 60.00018 * 3 2 1 5 5 C 1.53001 * 109.47231 * 300.00184 * 3 2 1 6 6 N 1.46900 * 109.47186 * 179.97438 * 3 2 1 7 7 C 1.46896 * 110.99927 * 177.83136 * 6 3 2 8 8 H 1.09001 * 109.47309 * 9.14329 * 7 6 3 9 9 C 1.53006 * 109.47342 * 249.14498 * 7 6 3 10 10 C 1.50701 * 109.47096 * 129.14704 * 7 6 3 11 11 O 1.21273 * 120.00190 * 359.97438 * 10 7 6 12 12 N 1.34782 * 119.99690 * 180.02562 * 10 7 6 13 13 C 1.46503 * 119.99388 * 180.27524 * 12 10 7 14 14 C 1.53039 * 109.45573 * 274.78616 * 13 12 10 15 15 C 1.53201 * 109.31001 * 178.61846 * 14 13 12 16 16 N 1.46931 * 108.77423 * 54.63470 * 15 14 13 17 17 C 1.36932 * 120.62663 * 126.41317 * 16 15 14 18 18 H 1.07999 * 120.00171 * 331.71077 * 17 16 15 19 19 C 1.38811 * 119.99766 * 151.70482 * 17 16 15 20 20 N 1.31624 * 120.00295 * 159.49698 * 19 17 16 21 21 Si 1.86800 * 119.99981 * 339.49748 * 19 17 16 22 22 H 1.48498 * 109.47340 * 93.82769 * 21 19 17 23 23 H 1.48506 * 109.47137 * 213.82288 * 21 19 17 24 24 H 1.48500 * 109.47232 * 333.82505 * 21 19 17 25 25 C 1.46919 * 118.73962 * 306.39115 * 16 15 14 26 26 C 1.53042 * 109.45579 * 154.72081 * 13 12 10 27 27 H 1.09006 * 109.47052 * 60.00207 * 1 2 3 28 28 H 1.09004 * 109.46892 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47523 * 300.00054 * 1 2 3 30 30 H 1.09001 * 109.47523 * 239.99946 * 2 1 3 31 31 H 1.08996 * 109.47442 * 120.00100 * 2 1 3 32 32 H 1.08997 * 109.47203 * 173.98966 * 4 3 2 33 33 H 1.09001 * 109.47062 * 293.98753 * 4 3 2 34 34 H 1.08996 * 109.47092 * 53.98268 * 4 3 2 35 35 H 1.09004 * 109.46863 * 301.96567 * 5 3 2 36 36 H 1.09000 * 109.47093 * 61.96005 * 5 3 2 37 37 H 1.08994 * 109.47382 * 181.96829 * 5 3 2 38 38 H 1.00903 * 111.00277 * 301.78570 * 6 3 2 39 39 H 1.09001 * 109.46776 * 303.97336 * 9 7 6 40 40 H 1.09002 * 109.46788 * 63.97406 * 9 7 6 41 41 H 1.08997 * 109.47161 * 183.97318 * 9 7 6 42 42 H 0.96996 * 120.00175 * 359.97438 * 12 10 7 43 43 H 1.08996 * 109.46147 * 34.74820 * 13 12 10 44 44 H 1.08998 * 109.49852 * 298.56349 * 14 13 12 45 45 H 1.08997 * 109.49843 * 58.66794 * 14 13 12 46 46 H 1.09002 * 109.58198 * 294.84775 * 15 14 13 47 47 H 1.08996 * 109.70176 * 174.49288 * 15 14 13 48 48 H 0.96990 * 120.00432 * 180.02562 * 20 19 17 49 49 H 1.09000 * 109.58893 * 293.82348 * 25 16 15 50 50 H 1.08996 * 109.70473 * 173.46498 * 25 16 15 51 51 H 1.08999 * 109.49817 * 301.33160 * 26 13 12 52 52 H 1.09000 * 109.49557 * 61.40264 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5299 2.1638 -1.2492 6 7 3.5090 1.4425 0.0006 7 6 4.0354 2.8129 -0.0513 8 1 3.2183 3.5215 0.0849 9 6 4.6982 3.0537 -1.4091 10 6 5.0524 3.0022 1.0447 11 8 5.3126 2.0860 1.7953 12 7 5.6719 4.1902 1.1912 13 6 6.6649 4.3723 2.2528 14 6 5.9556 4.7525 3.5545 15 6 6.9938 4.9083 4.6703 16 7 8.0143 5.8718 4.2355 17 6 8.3259 6.9559 5.0117 18 1 7.5827 7.3795 5.6711 19 6 9.5969 7.5106 4.9513 20 7 9.7954 8.7472 5.3560 21 14 11.0259 6.5018 4.2955 22 1 11.1979 6.7716 2.8453 23 1 12.2681 6.8745 5.0189 24 1 10.7477 5.0576 4.5008 25 6 8.6945 5.6496 2.9523 26 6 7.6373 5.4854 1.8558 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.9785 3.1556 1.3047 33 1 0.4453 2.2579 1.1971 34 1 1.8026 1.5915 2.1359 35 1 1.8642 1.6300 -2.1389 36 1 0.4405 2.1944 -1.2318 37 1 1.9218 3.1807 -1.2671 38 1 3.8703 0.9465 0.8016 39 1 5.4686 2.3009 -1.5759 40 1 3.9477 2.9863 -2.1968 41 1 5.1504 4.0454 -1.4220 42 1 5.4635 4.9232 0.5911 43 1 7.2161 3.4432 2.3977 44 1 5.4245 5.6944 3.4177 45 1 5.2463 3.9701 3.8242 46 1 7.4625 3.9448 4.8703 47 1 6.5085 5.2735 5.5754 48 1 10.6834 9.1349 5.3134 49 1 9.3019 4.7465 3.0123 50 1 9.3311 6.5035 2.7211 51 1 8.1249 5.2246 0.9164 52 1 7.0902 6.4203 1.7345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613942103.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:34 Heat of formation + Delta-G solvation = -46.552276 kcal Electronic energy + Delta-G solvation = -27428.329804 eV Core-core repulsion = 23847.975882 eV Total energy + Delta-G solvation = -3580.353922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.45379 -39.77925 -38.82649 -36.12036 -35.01198 -34.03758 -32.05375 -31.96157 -30.78207 -29.48272 -28.18842 -26.96646 -25.47107 -24.65660 -24.09267 -23.11073 -21.34102 -20.91152 -19.84103 -19.05037 -18.36702 -17.64647 -16.96449 -16.81756 -16.14398 -15.98116 -15.69600 -15.53405 -15.37098 -15.07955 -14.77866 -14.68564 -14.48501 -14.19730 -14.04305 -13.83183 -13.53166 -13.40254 -13.31956 -13.10015 -12.91496 -12.74518 -12.62093 -12.57753 -12.37142 -12.28969 -12.09764 -12.08042 -12.05561 -11.81507 -11.58694 -11.55128 -11.40085 -11.30433 -10.89932 -10.66998 -10.08669 -9.45646 -8.97715 -8.18156 -5.51457 1.28288 1.41633 1.50269 1.56837 2.09760 2.39889 3.03880 3.11408 3.29399 3.64571 3.78089 3.82969 3.92892 3.97117 4.14958 4.19521 4.22183 4.28076 4.32906 4.45477 4.47327 4.57617 4.59829 4.62110 4.66605 4.67981 4.78162 4.83567 4.89036 4.94069 4.95339 4.97728 4.99386 5.03564 5.10304 5.13284 5.18974 5.19853 5.23862 5.35978 5.37519 5.47080 5.48754 5.51875 5.85329 6.07219 6.11212 6.35517 6.56131 6.88756 7.19613 7.58980 7.99947 9.01604 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.031872 B = 0.002732 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.305609 B =10246.794127 C =10532.584681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C 0.105 3.895 4 C -0.181 4.181 5 C -0.140 4.140 6 N -0.670 5.670 7 C 0.068 3.932 8 H 0.103 0.897 9 C -0.131 4.131 10 C 0.500 3.500 11 O -0.578 6.578 12 N -0.707 5.707 13 C 0.160 3.840 14 C -0.126 4.126 15 C 0.147 3.853 16 N -0.618 5.618 17 C -0.250 4.250 18 H 0.052 0.948 19 C -0.032 4.032 20 N -0.955 5.955 21 Si 0.943 3.057 22 H -0.268 1.268 23 H -0.311 1.311 24 H -0.266 1.266 25 C 0.122 3.878 26 C -0.127 4.127 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.346 0.654 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.414 0.586 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.027 0.973 47 H 0.058 0.942 48 H 0.262 0.738 49 H 0.030 0.970 50 H 0.058 0.942 51 H 0.090 0.910 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.409 -14.235 -17.961 29.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.145 4.145 3 C 0.014 3.986 4 C -0.240 4.240 5 C -0.197 4.197 6 N -0.305 5.305 7 C -0.045 4.045 8 H 0.121 0.879 9 C -0.189 4.189 10 C 0.287 3.713 11 O -0.458 6.458 12 N -0.358 5.358 13 C 0.055 3.945 14 C -0.166 4.166 15 C 0.021 3.979 16 N -0.343 5.343 17 C -0.379 4.379 18 H 0.070 0.930 19 C -0.227 4.227 20 N -0.600 5.600 21 Si 0.772 3.228 22 H -0.195 1.195 23 H -0.240 1.240 24 H -0.191 1.191 25 C -0.004 4.004 26 C -0.166 4.166 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.169 0.831 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.251 0.749 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.045 0.955 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.048 0.952 50 H 0.077 0.923 51 H 0.108 0.892 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.066 -14.878 -18.066 29.565 hybrid contribution 0.909 0.546 1.217 1.614 sum -17.157 -14.332 -16.849 27.994 Atomic orbital electron populations 1.21855 0.94311 1.02173 1.02455 1.21465 0.96634 0.94544 1.01903 1.21140 0.86175 0.96209 0.95037 1.22617 1.02888 1.00224 0.98248 1.21997 1.01429 0.99969 0.96330 1.60966 1.07498 1.12716 1.49335 1.21689 0.95587 0.93191 0.94018 0.87926 1.21814 1.01127 1.01795 0.94159 1.21609 0.82362 0.81940 0.85423 1.90650 1.65572 1.42326 1.47235 1.46016 1.41617 1.14184 1.34016 1.20666 0.88880 0.98241 0.86741 1.22177 0.98056 1.00942 0.95448 1.20999 0.89362 0.91525 0.95967 1.44496 1.45032 1.26386 1.18409 1.18844 0.95297 1.03732 1.20062 0.92986 1.25902 0.99669 0.96988 1.00113 1.69953 1.22853 1.13885 1.53352 0.85946 0.79083 0.80005 0.77743 1.19455 1.23976 1.19063 1.21357 0.94708 0.98777 0.85522 1.22156 0.97213 0.98457 0.98818 0.91402 0.92282 0.92557 0.91375 0.93244 0.93235 0.90357 0.93958 0.91776 0.90827 0.92184 0.83091 0.93016 0.89956 0.90721 0.74908 0.91527 0.91804 0.91959 0.95519 0.92365 0.92857 0.95207 0.92339 0.89166 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.21 71.98 0.66 -0.95 16 2 C -0.11 -1.53 5.27 30.59 0.16 -1.37 16 3 C 0.11 1.57 0.72 3.53 0.00 1.57 16 4 C -0.18 -2.87 7.91 71.98 0.57 -2.30 16 5 C -0.14 -1.58 7.34 71.98 0.53 -1.06 16 6 N -0.67 -12.74 6.01 -452.08 -2.72 -15.46 16 7 C 0.07 1.19 1.90 44.17 0.08 1.27 16 8 H 0.10 1.51 4.78 -2.39 -0.01 1.49 16 9 C -0.13 -1.81 9.30 71.98 0.67 -1.14 16 10 C 0.50 12.19 7.19 87.66 0.63 12.82 16 11 O -0.58 -18.92 14.97 -3.01 -0.05 -18.96 16 12 N -0.71 -15.89 4.95 -442.40 -2.19 -18.08 16 13 C 0.16 4.73 2.42 45.02 0.11 4.83 16 14 C -0.13 -4.13 5.65 30.67 0.17 -3.95 16 15 C 0.15 5.87 6.52 86.36 0.56 6.43 16 16 N -0.62 -28.96 2.75 -699.09 -1.93 -30.88 16 17 C -0.25 -14.12 10.03 84.03 0.84 -13.27 16 18 H 0.05 3.22 8.06 -2.91 -0.02 3.19 16 19 C -0.03 -1.84 5.23 84.86 0.44 -1.40 16 20 N -0.95 -59.53 13.97 21.65 0.30 -59.22 16 21 Si 0.94 46.22 24.37 68.60 1.67 47.89 16 22 H -0.27 -12.15 6.67 99.48 0.66 -11.49 16 23 H -0.31 -15.55 7.11 99.48 0.71 -14.85 16 24 H -0.27 -12.71 6.60 99.48 0.66 -12.05 16 25 C 0.12 4.99 4.20 86.37 0.36 5.35 16 26 C -0.13 -3.87 5.55 30.67 0.17 -3.70 16 27 H 0.07 0.60 6.47 -2.38 -0.02 0.59 16 28 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.06 0.61 6.57 -2.39 -0.02 0.59 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.83 6.20 -2.39 -0.01 0.81 16 33 H 0.08 1.00 6.77 -2.39 -0.02 0.99 16 34 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.66 6.54 -2.39 -0.02 0.65 16 37 H 0.06 0.63 5.98 -2.39 -0.01 0.62 16 38 H 0.35 8.35 6.84 -89.69 -0.61 7.74 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.93 7.17 -2.39 -0.02 0.91 16 41 H 0.07 0.79 7.45 -2.39 -0.02 0.77 16 42 H 0.41 6.75 7.97 -92.71 -0.74 6.01 16 43 H 0.07 2.25 7.57 -2.39 -0.02 2.24 16 44 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 46 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 48 H 0.26 15.53 8.31 -92.72 -0.77 14.76 16 49 H 0.03 1.22 7.04 -2.39 -0.02 1.20 16 50 H 0.06 2.61 4.63 -2.39 -0.01 2.60 16 51 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 52 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -68.74 381.67 0.53 -68.21 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.54 Total: 23.37 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 5.97 Total: 3.14 kcal Atomic # 7 Polarization: -117.12 SS G_CDS: -6.53 Total: -123.64 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.05 Total: -18.96 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.67 Total: 47.89 kcal Total: -68.74 0.53 -68.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613942103.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.655 kcal (2) G-P(sol) polarization free energy of solvation -68.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds