Wall clock time and date at job start Tue Mar 31 2020 10:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47409 * 2 1 4 4 C 1.53006 * 109.47146 * 59.99286 * 3 2 1 5 5 C 1.52998 * 109.46801 * 299.99967 * 3 2 1 6 6 N 1.46893 * 109.47495 * 179.97438 * 3 2 1 7 7 C 1.46904 * 111.00283 * 181.60795 * 6 3 2 8 8 H 1.09005 * 109.46831 * 346.67860 * 7 6 3 9 9 C 1.53003 * 109.47367 * 106.67868 * 7 6 3 10 10 C 1.50697 * 109.47191 * 226.67873 * 7 6 3 11 11 O 1.21289 * 119.99691 * 359.97438 * 10 7 6 12 12 N 1.34770 * 120.00257 * 179.97438 * 10 7 6 13 13 C 1.46494 * 120.00465 * 180.02562 * 12 10 7 14 14 C 1.53042 * 109.46663 * 205.00084 * 13 12 10 15 15 C 1.53180 * 109.31541 * 178.61457 * 14 13 12 16 16 N 1.46928 * 108.89891 * 54.56227 * 15 14 13 17 17 C 1.36935 * 120.62911 * 126.45527 * 16 15 14 18 18 H 1.07995 * 120.00731 * 333.50902 * 17 16 15 19 19 C 1.38817 * 119.99446 * 153.50483 * 17 16 15 20 20 N 1.31619 * 120.00359 * 342.49581 * 19 17 16 21 21 Si 1.86797 * 119.99782 * 162.49469 * 19 17 16 22 22 H 1.48499 * 109.47468 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47547 * 120.00033 * 21 19 17 24 24 H 1.48498 * 109.47603 * 240.00090 * 21 19 17 25 25 C 1.46962 * 118.71458 * 306.64844 * 16 15 14 26 26 C 1.53048 * 109.45957 * 84.93226 * 13 12 10 27 27 H 1.09002 * 109.46484 * 60.00435 * 1 2 3 28 28 H 1.08992 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46796 * 300.00401 * 1 2 3 30 30 H 1.08995 * 109.47490 * 239.99714 * 2 1 3 31 31 H 1.09009 * 109.46867 * 119.99628 * 2 1 3 32 32 H 1.08999 * 109.46740 * 174.73691 * 4 3 2 33 33 H 1.09000 * 109.47392 * 294.74547 * 4 3 2 34 34 H 1.09004 * 109.46298 * 54.74315 * 4 3 2 35 35 H 1.09004 * 109.47111 * 303.49485 * 5 3 2 36 36 H 1.08998 * 109.47361 * 63.49401 * 5 3 2 37 37 H 1.09004 * 109.46906 * 183.49743 * 5 3 2 38 38 H 1.00897 * 111.00328 * 57.65114 * 6 3 2 39 39 H 1.08997 * 109.47194 * 55.38480 * 9 7 6 40 40 H 1.08999 * 109.47048 * 175.38901 * 9 7 6 41 41 H 1.08999 * 109.46794 * 295.38950 * 9 7 6 42 42 H 0.97005 * 119.99954 * 359.97438 * 12 10 7 43 43 H 1.09006 * 109.46328 * 324.97584 * 13 12 10 44 44 H 1.08999 * 109.49259 * 58.66240 * 14 13 12 45 45 H 1.09000 * 109.49420 * 298.56756 * 14 13 12 46 46 H 1.08998 * 109.58784 * 174.42502 * 15 14 13 47 47 H 1.09006 * 109.58815 * 294.70295 * 15 14 13 48 48 H 0.97002 * 120.00054 * 179.97438 * 20 19 17 49 49 H 1.08998 * 109.46256 * 293.56695 * 25 16 15 50 50 H 1.08992 * 109.71201 * 173.28190 * 25 16 15 51 51 H 1.09000 * 109.49580 * 301.33537 * 26 13 12 52 52 H 1.08995 * 109.49800 * 61.43885 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1639 1.2492 5 6 1.5301 2.1637 -1.2493 6 7 3.5090 1.4425 0.0006 7 6 4.0355 2.8134 0.0391 8 1 3.2322 3.5174 -0.1785 9 6 4.6042 3.1025 1.4298 10 6 5.1260 2.9618 -0.9903 11 8 5.4346 2.0183 -1.6871 12 7 5.7584 4.1429 -1.1367 13 6 6.8181 4.2874 -2.1378 14 6 7.7635 5.4162 -1.7205 15 6 8.8894 5.5414 -2.7515 16 7 8.2967 5.7130 -4.0849 17 6 8.6603 6.7672 -4.8797 18 1 9.0220 7.6812 -4.4324 19 6 8.5642 6.6609 -6.2604 20 7 8.4626 5.4757 -6.8238 21 14 8.5791 8.1999 -7.3189 22 1 8.7021 9.3975 -6.4495 23 1 9.7320 8.1469 -8.2534 24 1 7.3158 8.2790 -8.0954 25 6 7.3030 4.7339 -4.5473 26 6 6.1948 4.6178 -3.4960 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.9683 3.1607 1.2975 33 1 0.4440 2.2462 1.2033 34 1 1.8143 1.5984 2.1367 35 1 1.8414 1.6149 -2.1381 36 1 0.4419 2.2183 -1.2185 37 1 1.9438 3.1717 -1.2812 38 1 3.8710 0.9384 -0.7949 39 1 5.3505 2.3489 1.6810 40 1 5.0679 4.0890 1.4348 41 1 3.7993 3.0757 2.1642 42 1 5.5113 4.8977 -0.5796 43 1 7.3770 3.3545 -2.2123 44 1 8.1891 5.1913 -0.7425 45 1 7.2103 6.3541 -1.6701 46 1 9.5089 6.4059 -2.5130 47 1 9.5005 4.6388 -2.7367 48 1 8.3951 5.4015 -7.7886 49 1 7.7831 3.7645 -4.6806 50 1 6.8754 5.0632 -5.4942 51 1 5.5039 3.8246 -3.7818 52 1 5.6565 5.5632 -3.4290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613942104.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:37 Heat of formation + Delta-G solvation = -28.776407 kcal Electronic energy + Delta-G solvation = -27370.589627 eV Core-core repulsion = 23791.006524 eV Total energy + Delta-G solvation = -3579.583103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.30923 -38.61353 -37.26195 -34.48656 -34.11514 -32.16384 -30.53762 -29.95715 -29.35875 -28.78086 -27.46457 -25.30950 -24.58640 -23.26671 -22.25364 -21.58934 -20.02800 -19.23299 -19.09748 -17.62922 -16.80472 -16.17681 -15.78185 -15.24973 -14.90688 -14.72914 -14.48834 -14.25757 -13.79091 -13.66771 -13.51311 -13.35334 -13.02822 -12.82831 -12.68968 -12.50524 -12.46929 -12.40167 -12.15438 -12.06445 -11.55266 -11.52505 -11.40570 -11.38526 -11.14726 -10.94548 -10.89837 -10.74804 -10.62597 -10.41567 -10.24081 -10.08081 -9.80758 -9.77482 -9.44753 -8.75373 -8.61300 -8.43434 -6.71787 -5.79511 -3.21369 2.73259 3.26958 3.36628 3.44083 3.46111 3.93541 4.48328 4.51471 4.65311 4.70839 4.89636 4.96425 5.06525 5.13012 5.20288 5.24889 5.29686 5.37587 5.38537 5.40137 5.44341 5.58239 5.61035 5.61758 5.65778 5.73908 5.80387 5.81027 5.84441 5.88707 6.02244 6.05837 6.12865 6.17193 6.21957 6.32981 6.41198 6.57835 6.62910 6.74169 6.83437 6.91044 6.93353 7.30114 7.36518 7.65839 7.70563 7.78496 8.34489 8.42995 9.19523 9.83237 10.39131 11.29008 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.023767 B = 0.002754 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.815257 B =10163.389075 C =10739.933900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C 0.107 3.893 4 C -0.142 4.142 5 C -0.185 4.185 6 N -0.664 5.664 7 C 0.060 3.940 8 H 0.085 0.915 9 C -0.135 4.135 10 C 0.501 3.499 11 O -0.538 6.538 12 N -0.720 5.720 13 C 0.150 3.850 14 C -0.138 4.138 15 C 0.148 3.852 16 N -0.593 5.593 17 C -0.252 4.252 18 H 0.067 0.933 19 C 0.001 3.999 20 N -0.901 5.901 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.173 3.827 26 C -0.145 4.145 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.359 0.641 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.395 0.605 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.020 0.980 48 H 0.254 0.746 49 H 0.020 0.980 50 H 0.092 0.908 51 H 0.051 0.949 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.596 -5.916 17.525 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C 0.016 3.984 4 C -0.200 4.200 5 C -0.244 4.244 6 N -0.301 5.301 7 C -0.053 4.053 8 H 0.102 0.898 9 C -0.193 4.193 10 C 0.286 3.714 11 O -0.415 6.415 12 N -0.370 5.370 13 C 0.047 3.953 14 C -0.178 4.178 15 C 0.021 3.979 16 N -0.316 5.316 17 C -0.382 4.382 18 H 0.085 0.915 19 C -0.198 4.198 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.046 3.954 26 C -0.186 4.186 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.184 0.816 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.228 0.772 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.038 0.962 48 H 0.064 0.936 49 H 0.038 0.962 50 H 0.110 0.890 51 H 0.070 0.930 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.278 -6.731 17.488 23.559 hybrid contribution -0.325 1.438 -1.336 1.989 sum -14.603 -5.294 16.152 22.409 Atomic orbital electron populations 1.21874 0.95610 1.01632 1.02008 1.21489 0.95544 0.95033 1.02656 1.21024 0.87249 0.95669 0.94451 1.22020 1.00470 1.00198 0.97293 1.22653 1.02022 1.00966 0.98772 1.60826 1.06214 1.12424 1.50643 1.21603 0.95700 0.92846 0.95190 0.89785 1.21835 1.01633 1.01212 0.94651 1.20891 0.83387 0.83028 0.84064 1.90676 1.65287 1.39014 1.46530 1.46298 1.38608 1.12606 1.39480 1.21063 0.87281 0.99442 0.87559 1.22326 0.98602 0.97601 0.99300 1.20830 0.92376 0.98857 0.85823 1.44121 1.44484 1.29364 1.13610 1.19227 1.39937 0.91522 0.87510 0.91517 1.25034 1.01365 0.96357 0.97042 1.70048 1.53773 1.21141 1.09632 0.86230 0.77289 0.82850 0.80439 1.20281 1.21718 1.21588 1.20780 0.87353 0.91831 0.95403 1.22551 1.00221 1.00009 0.95785 0.92527 0.92759 0.92408 0.91991 0.91112 0.92480 0.92217 0.91860 0.92298 0.91712 0.92622 0.81599 0.91556 0.92409 0.91442 0.77165 0.90043 0.92578 0.91880 0.92336 0.96199 0.93632 0.96226 0.89030 0.93032 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.21 37.16 0.34 -0.71 16 2 C -0.11 -0.92 5.26 -26.73 -0.14 -1.06 16 3 C 0.11 0.97 0.72 -131.60 -0.09 0.88 16 4 C -0.14 -1.09 7.20 37.16 0.27 -0.82 16 5 C -0.19 -1.75 7.95 37.16 0.30 -1.46 16 6 N -0.66 -7.38 5.99 -94.24 -0.56 -7.94 16 7 C 0.06 0.65 2.03 -68.86 -0.14 0.51 16 8 H 0.08 0.82 4.86 -51.93 -0.25 0.57 16 9 C -0.13 -1.21 9.21 37.16 0.34 -0.87 16 10 C 0.50 7.23 7.18 -10.99 -0.08 7.15 16 11 O -0.54 -9.91 15.00 5.55 0.08 -9.83 16 12 N -0.72 -9.88 4.94 -53.76 -0.27 -10.15 16 13 C 0.15 2.59 2.42 -67.89 -0.16 2.43 16 14 C -0.14 -2.28 5.55 -26.62 -0.15 -2.42 16 15 C 0.15 3.04 6.51 -3.72 -0.02 3.02 16 16 N -0.59 -14.80 3.01 -172.30 -0.52 -15.32 16 17 C -0.25 -6.88 9.60 -15.06 -0.14 -7.03 16 18 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 19 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 20 N -0.90 -26.38 11.12 55.49 0.62 -25.77 16 21 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.17 4.22 5.31 -3.69 -0.02 4.20 16 26 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 27 H 0.06 0.39 6.51 -51.93 -0.34 0.05 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.36 6.55 -51.93 -0.34 0.02 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 32 H 0.06 0.43 5.55 -51.93 -0.29 0.14 16 33 H 0.06 0.40 6.72 -51.93 -0.35 0.05 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.52 6.62 -51.93 -0.34 0.18 16 37 H 0.05 0.56 6.14 -51.93 -0.32 0.24 16 38 H 0.36 4.79 6.88 -39.29 -0.27 4.52 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.44 7.44 -51.93 -0.39 0.06 16 41 H 0.07 0.53 6.58 -51.93 -0.34 0.18 16 42 H 0.39 4.27 7.97 -40.82 -0.33 3.95 16 43 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.09 2.50 5.97 -51.93 -0.31 2.19 16 51 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 52 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -30.70 386.88 -9.08 -39.78 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -9.29 Total: 6.10 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 0.06 Total: 0.68 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.73 Total: -59.17 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.70 -9.08 -39.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613942104.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.000 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds