Wall clock time and date at job start Tue Mar 31 2020 10:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47409 * 2 1 4 4 C 1.53006 * 109.47146 * 59.99286 * 3 2 1 5 5 C 1.52998 * 109.46801 * 299.99967 * 3 2 1 6 6 N 1.46893 * 109.47495 * 179.97438 * 3 2 1 7 7 C 1.46904 * 111.00283 * 181.60795 * 6 3 2 8 8 H 1.09005 * 109.46831 * 346.67860 * 7 6 3 9 9 C 1.53003 * 109.47367 * 106.67868 * 7 6 3 10 10 C 1.50697 * 109.47191 * 226.67873 * 7 6 3 11 11 O 1.21289 * 119.99691 * 359.97438 * 10 7 6 12 12 N 1.34770 * 120.00257 * 179.97438 * 10 7 6 13 13 C 1.46494 * 120.00465 * 180.02562 * 12 10 7 14 14 C 1.53042 * 109.46663 * 205.00084 * 13 12 10 15 15 C 1.53180 * 109.31541 * 178.61457 * 14 13 12 16 16 N 1.46928 * 108.89891 * 54.56227 * 15 14 13 17 17 C 1.36935 * 120.62911 * 126.45527 * 16 15 14 18 18 H 1.07995 * 120.00731 * 333.50902 * 17 16 15 19 19 C 1.38817 * 119.99446 * 153.50483 * 17 16 15 20 20 N 1.31619 * 120.00359 * 342.49581 * 19 17 16 21 21 Si 1.86797 * 119.99782 * 162.49469 * 19 17 16 22 22 H 1.48499 * 109.47468 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47547 * 120.00033 * 21 19 17 24 24 H 1.48498 * 109.47603 * 240.00090 * 21 19 17 25 25 C 1.46962 * 118.71458 * 306.64844 * 16 15 14 26 26 C 1.53048 * 109.45957 * 84.93226 * 13 12 10 27 27 H 1.09002 * 109.46484 * 60.00435 * 1 2 3 28 28 H 1.08992 * 109.47103 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46796 * 300.00401 * 1 2 3 30 30 H 1.08995 * 109.47490 * 239.99714 * 2 1 3 31 31 H 1.09009 * 109.46867 * 119.99628 * 2 1 3 32 32 H 1.08999 * 109.46740 * 174.73691 * 4 3 2 33 33 H 1.09000 * 109.47392 * 294.74547 * 4 3 2 34 34 H 1.09004 * 109.46298 * 54.74315 * 4 3 2 35 35 H 1.09004 * 109.47111 * 303.49485 * 5 3 2 36 36 H 1.08998 * 109.47361 * 63.49401 * 5 3 2 37 37 H 1.09004 * 109.46906 * 183.49743 * 5 3 2 38 38 H 1.00897 * 111.00328 * 57.65114 * 6 3 2 39 39 H 1.08997 * 109.47194 * 55.38480 * 9 7 6 40 40 H 1.08999 * 109.47048 * 175.38901 * 9 7 6 41 41 H 1.08999 * 109.46794 * 295.38950 * 9 7 6 42 42 H 0.97005 * 119.99954 * 359.97438 * 12 10 7 43 43 H 1.09006 * 109.46328 * 324.97584 * 13 12 10 44 44 H 1.08999 * 109.49259 * 58.66240 * 14 13 12 45 45 H 1.09000 * 109.49420 * 298.56756 * 14 13 12 46 46 H 1.08998 * 109.58784 * 174.42502 * 15 14 13 47 47 H 1.09006 * 109.58815 * 294.70295 * 15 14 13 48 48 H 0.97002 * 120.00054 * 179.97438 * 20 19 17 49 49 H 1.08998 * 109.46256 * 293.56695 * 25 16 15 50 50 H 1.08992 * 109.71201 * 173.28190 * 25 16 15 51 51 H 1.09000 * 109.49580 * 301.33537 * 26 13 12 52 52 H 1.08995 * 109.49800 * 61.43885 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1639 1.2492 5 6 1.5301 2.1637 -1.2493 6 7 3.5090 1.4425 0.0006 7 6 4.0355 2.8134 0.0391 8 1 3.2322 3.5174 -0.1785 9 6 4.6042 3.1025 1.4298 10 6 5.1260 2.9618 -0.9903 11 8 5.4346 2.0183 -1.6871 12 7 5.7584 4.1429 -1.1367 13 6 6.8181 4.2874 -2.1378 14 6 7.7635 5.4162 -1.7205 15 6 8.8894 5.5414 -2.7515 16 7 8.2967 5.7130 -4.0849 17 6 8.6603 6.7672 -4.8797 18 1 9.0220 7.6812 -4.4324 19 6 8.5642 6.6609 -6.2604 20 7 8.4626 5.4757 -6.8238 21 14 8.5791 8.1999 -7.3189 22 1 8.7021 9.3975 -6.4495 23 1 9.7320 8.1469 -8.2534 24 1 7.3158 8.2790 -8.0954 25 6 7.3030 4.7339 -4.5473 26 6 6.1948 4.6178 -3.4960 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.9683 3.1607 1.2975 33 1 0.4440 2.2462 1.2033 34 1 1.8143 1.5984 2.1367 35 1 1.8414 1.6149 -2.1381 36 1 0.4419 2.2183 -1.2185 37 1 1.9438 3.1717 -1.2812 38 1 3.8710 0.9384 -0.7949 39 1 5.3505 2.3489 1.6810 40 1 5.0679 4.0890 1.4348 41 1 3.7993 3.0757 2.1642 42 1 5.5113 4.8977 -0.5796 43 1 7.3770 3.3545 -2.2123 44 1 8.1891 5.1913 -0.7425 45 1 7.2103 6.3541 -1.6701 46 1 9.5089 6.4059 -2.5130 47 1 9.5005 4.6388 -2.7367 48 1 8.3951 5.4015 -7.7886 49 1 7.7831 3.7645 -4.6806 50 1 6.8754 5.0632 -5.4942 51 1 5.5039 3.8246 -3.7818 52 1 5.6565 5.5632 -3.4290 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613942104.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:37 Heat of formation + Delta-G solvation = -49.335696 kcal Electronic energy + Delta-G solvation = -27371.481145 eV Core-core repulsion = 23791.006524 eV Total energy + Delta-G solvation = -3580.474620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.42254 -39.67893 -38.71515 -36.06995 -35.00481 -33.87904 -31.90216 -31.45355 -30.64903 -29.53011 -28.19643 -27.03761 -25.46225 -24.43854 -23.93588 -23.04049 -21.33589 -20.70319 -19.83499 -18.94663 -18.40610 -17.41342 -16.82989 -16.78488 -16.14659 -15.82275 -15.59789 -15.37573 -15.35374 -15.00552 -14.83451 -14.63109 -14.24928 -14.11486 -14.02170 -13.47551 -13.33761 -13.22250 -13.09980 -13.05708 -12.91626 -12.72977 -12.67318 -12.59437 -12.32383 -12.15373 -12.10026 -12.06013 -12.03245 -11.86954 -11.56670 -11.55529 -11.41359 -11.30358 -10.77108 -10.61141 -10.04291 -9.45366 -8.75554 -7.89141 -5.34292 1.45876 1.47501 1.58240 1.58459 2.11995 2.50191 3.11510 3.26583 3.60090 3.70531 3.81372 3.87593 3.96081 4.04032 4.15023 4.21613 4.30272 4.33210 4.44188 4.46351 4.57340 4.62109 4.63430 4.67458 4.77033 4.77941 4.83619 4.92975 4.95054 5.00015 5.02506 5.04601 5.09068 5.10290 5.18163 5.20221 5.23200 5.28942 5.37322 5.43799 5.48300 5.51925 5.52524 5.61922 5.67703 6.07634 6.33594 6.35939 6.58268 7.11008 7.23240 7.82334 8.34446 9.18124 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.023767 B = 0.002754 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.815257 B =10163.389075 C =10739.933900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C 0.105 3.895 4 C -0.139 4.139 5 C -0.183 4.183 6 N -0.671 5.671 7 C 0.069 3.931 8 H 0.101 0.899 9 C -0.131 4.131 10 C 0.498 3.502 11 O -0.583 6.583 12 N -0.705 5.705 13 C 0.161 3.839 14 C -0.121 4.121 15 C 0.140 3.860 16 N -0.610 5.610 17 C -0.258 4.258 18 H 0.076 0.924 19 C -0.057 4.057 20 N -0.940 5.940 21 Si 0.969 3.031 22 H -0.261 1.261 23 H -0.294 1.294 24 H -0.292 1.292 25 C 0.182 3.818 26 C -0.129 4.129 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.344 0.656 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.415 0.585 43 H 0.054 0.946 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.010 0.990 48 H 0.249 0.751 49 H -0.014 1.014 50 H 0.057 0.943 51 H 0.042 0.958 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.031 -4.077 20.384 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C 0.014 3.986 4 C -0.196 4.196 5 C -0.242 4.242 6 N -0.306 5.306 7 C -0.044 4.044 8 H 0.118 0.882 9 C -0.189 4.189 10 C 0.285 3.715 11 O -0.462 6.462 12 N -0.357 5.357 13 C 0.056 3.944 14 C -0.160 4.160 15 C 0.015 3.985 16 N -0.333 5.333 17 C -0.388 4.388 18 H 0.093 0.907 19 C -0.252 4.252 20 N -0.586 5.586 21 Si 0.798 3.202 22 H -0.185 1.185 23 H -0.221 1.221 24 H -0.219 1.219 25 C 0.055 3.945 26 C -0.169 4.169 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.167 0.833 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.252 0.748 43 H 0.073 0.927 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.028 0.972 48 H 0.058 0.942 49 H 0.004 0.996 50 H 0.075 0.925 51 H 0.060 0.940 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.730 -4.853 20.424 26.232 hybrid contribution 0.151 0.792 -2.211 2.353 sum -15.579 -4.061 18.213 24.309 Atomic orbital electron populations 1.21848 0.94189 1.02192 1.02490 1.21478 0.96740 0.94562 1.01842 1.21149 0.86083 0.96228 0.95122 1.22004 1.01354 1.00109 0.96168 1.22636 1.03035 1.00329 0.98170 1.60956 1.07511 1.12406 1.49730 1.21684 0.94622 0.93167 0.94927 0.88157 1.21849 1.01890 1.01730 0.93413 1.21627 0.83589 0.82280 0.84020 1.90669 1.66661 1.40578 1.48338 1.46001 1.37571 1.13386 1.38697 1.20656 0.87986 0.98626 0.87088 1.22127 0.96920 0.97643 0.99336 1.21046 0.93943 0.98826 0.84733 1.44371 1.45067 1.28869 1.15027 1.19623 1.38816 0.92379 0.88027 0.90678 1.25857 1.01863 0.99043 0.98442 1.70221 1.55603 1.23352 1.09438 0.85173 0.76624 0.79865 0.78584 1.18535 1.22129 1.21917 1.20477 0.88347 0.90015 0.95623 1.22286 0.98374 1.00024 0.96209 0.92595 0.92272 0.91259 0.93472 0.91300 0.91954 0.90838 0.91714 0.94311 0.90137 0.93014 0.83318 0.92986 0.90534 0.89700 0.74809 0.92735 0.88938 0.90488 0.91296 0.97181 0.94212 0.99585 0.92453 0.93953 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.21 71.98 0.66 -1.14 16 2 C -0.11 -1.73 5.26 30.60 0.16 -1.57 16 3 C 0.10 1.75 0.72 3.53 0.00 1.75 16 4 C -0.14 -1.72 7.20 71.98 0.52 -1.20 16 5 C -0.18 -3.26 7.95 71.98 0.57 -2.69 16 6 N -0.67 -14.34 5.99 -452.08 -2.71 -17.05 16 7 C 0.07 1.35 2.03 44.17 0.09 1.44 16 8 H 0.10 1.67 4.86 -2.38 -0.01 1.66 16 9 C -0.13 -1.94 9.21 71.98 0.66 -1.28 16 10 C 0.50 13.86 7.18 87.66 0.63 14.49 16 11 O -0.58 -21.90 15.00 -3.06 -0.05 -21.94 16 12 N -0.71 -17.85 4.94 -442.40 -2.19 -20.04 16 13 C 0.16 5.43 2.42 45.02 0.11 5.53 16 14 C -0.12 -3.65 5.55 30.67 0.17 -3.48 16 15 C 0.14 5.62 6.51 86.36 0.56 6.18 16 16 N -0.61 -30.75 3.01 -699.03 -2.10 -32.85 16 17 C -0.26 -14.11 9.60 84.03 0.81 -13.31 16 18 H 0.08 3.91 7.88 -2.91 -0.02 3.88 16 19 C -0.06 -3.23 4.92 84.86 0.42 -2.81 16 20 N -0.94 -57.09 11.12 21.65 0.24 -56.85 16 21 Si 0.97 44.98 29.59 68.60 2.03 47.01 16 22 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 C 0.18 9.27 5.31 86.36 0.46 9.73 16 26 C -0.13 -5.18 5.65 30.67 0.17 -5.01 16 27 H 0.06 0.68 6.51 -2.39 -0.02 0.67 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.68 6.55 -2.39 -0.02 0.67 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.06 0.71 5.55 -2.39 -0.01 0.70 16 33 H 0.07 0.72 6.72 -2.39 -0.02 0.71 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 35 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.08 1.15 6.62 -2.39 -0.02 1.14 16 37 H 0.05 0.95 6.14 -2.38 -0.01 0.93 16 38 H 0.34 9.37 6.88 -89.70 -0.62 8.75 16 39 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 0.85 7.44 -2.39 -0.02 0.84 16 41 H 0.08 1.00 6.58 -2.39 -0.02 0.98 16 42 H 0.41 7.38 7.97 -92.70 -0.74 6.64 16 43 H 0.05 2.17 7.58 -2.38 -0.02 2.15 16 44 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.07 2.59 7.93 -2.39 -0.02 2.58 16 47 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 48 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 49 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 16 50 H 0.06 3.30 5.97 -2.39 -0.01 3.28 16 51 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -69.70 386.88 0.78 -68.93 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.45 Total: 26.13 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 6.00 Total: 6.65 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -6.76 Total: -126.78 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -69.70 0.78 -68.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613942104.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.590 kcal (2) G-P(sol) polarization free energy of solvation -69.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds