Wall clock time and date at job start Tue Mar 31 2020 10:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46894 * 109.47515 * 120.00121 * 2 1 3 5 5 C 1.46953 * 111.00145 * 298.80295 * 4 2 1 6 6 C 1.53050 * 109.36755 * 176.80779 * 5 4 2 7 7 N 1.46960 * 109.36432 * 58.39861 * 6 5 4 8 8 C 1.46899 * 111.00113 * 176.81349 * 7 6 5 9 9 C 1.53004 * 109.46861 * 293.79819 * 8 7 6 10 10 C 1.53000 * 109.47205 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47417 * 180.02562 * 10 9 8 12 12 O 1.21281 * 119.99779 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99764 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99681 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47334 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47417 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99897 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00007 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00094 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00016 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47228 * 90.00009 * 20 18 16 22 22 H 1.48494 * 109.47091 * 210.00168 * 20 18 16 23 23 H 1.48502 * 109.46977 * 330.00385 * 20 18 16 24 24 C 1.46953 * 110.88103 * 300.68355 * 7 6 5 25 25 C 1.46960 * 111.00353 * 174.99903 * 4 2 1 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09005 * 109.48557 * 296.77643 * 5 4 2 34 34 H 1.09001 * 109.49075 * 56.83797 * 5 4 2 35 35 H 1.08997 * 109.48993 * 298.43110 * 6 5 4 36 36 H 1.09004 * 109.49263 * 178.36397 * 6 5 4 37 37 H 1.08995 * 109.47429 * 53.79801 * 8 7 6 38 38 H 1.08998 * 109.46945 * 173.80690 * 8 7 6 39 39 H 1.08997 * 109.47598 * 300.00238 * 9 8 7 40 40 H 1.08999 * 109.47238 * 60.00227 * 9 8 7 41 41 H 1.08997 * 109.47113 * 300.00628 * 10 9 8 42 42 H 1.08999 * 109.46761 * 60.00029 * 10 9 8 43 43 H 0.97000 * 120.00265 * 0.02562 * 13 11 10 44 44 H 1.08997 * 109.47585 * 300.00508 * 14 13 11 45 45 H 1.09007 * 109.46919 * 60.00173 * 14 13 11 46 46 H 1.09007 * 109.47201 * 300.00619 * 15 14 13 47 47 H 1.08999 * 109.46761 * 60.00092 * 15 14 13 48 48 H 0.96999 * 120.00385 * 179.97438 * 19 18 16 49 49 H 1.09005 * 109.48557 * 299.34971 * 24 7 6 50 50 H 1.09003 * 109.50693 * 179.29856 * 24 7 6 51 51 H 1.08994 * 109.49016 * 303.15640 * 25 4 2 52 52 H 1.09001 * 109.48608 * 63.22532 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.5721 -0.0098 2.4213 6 6 2.0345 -0.8044 3.6449 7 7 3.4987 -0.9284 3.6206 8 6 3.9884 -1.6210 4.8200 9 6 3.7201 -0.7563 6.0534 10 6 4.2296 -1.4778 7.3027 11 6 3.9648 -0.6264 8.5177 12 8 3.4217 0.4511 8.3963 13 7 4.3307 -1.0630 9.7391 14 6 4.0738 -0.2351 10.9201 15 6 4.5831 -0.9567 12.1695 16 6 4.3184 -0.1053 13.3844 17 1 3.8348 0.8542 13.2764 18 6 4.6925 -0.5519 14.6340 19 7 5.2810 -1.7207 14.7656 20 14 4.3637 0.5030 16.1401 21 1 3.0268 0.1709 16.6948 22 1 5.4046 0.2396 17.1658 23 1 4.3981 1.9373 15.7568 24 6 3.9463 -1.6111 2.3986 25 6 3.4839 -0.8165 1.1750 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.9999 0.9922 2.4555 34 1 0.4843 0.0586 2.4220 35 1 1.5851 -1.7972 3.6250 36 1 1.7287 -0.2846 4.5530 37 1 3.4713 -2.5747 4.9254 38 1 5.0599 -1.7970 4.7258 39 1 4.2372 0.1974 5.9480 40 1 2.6486 -0.5802 6.1476 41 1 3.7122 -2.4314 7.4079 42 1 5.3011 -1.6543 7.2087 43 1 4.7648 -1.9250 9.8362 44 1 4.5916 0.7183 10.8152 45 1 3.0023 -0.0582 11.0137 46 1 4.0657 -1.9103 12.2746 47 1 5.6546 -1.1332 12.0756 48 1 5.5446 -2.0348 15.6447 49 1 3.5185 -2.6131 2.3645 50 1 5.0341 -1.6798 2.3978 51 1 3.7897 -1.3363 0.2671 52 1 3.9333 0.1763 1.1951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907321517.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:34 Heat of formation + Delta-G solvation = -49.707165 kcal Electronic energy + Delta-G solvation = -25518.996790 eV Core-core repulsion = 21938.506061 eV Total energy + Delta-G solvation = -3580.490728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.04745 -39.22946 -37.16639 -34.90103 -33.77221 -32.82717 -31.59694 -31.23265 -29.70306 -27.64936 -27.53041 -25.32749 -24.15413 -24.05227 -21.61929 -21.09306 -20.81269 -19.87071 -19.46402 -17.02333 -16.61942 -16.23915 -15.97341 -15.50625 -15.37533 -15.11110 -15.02597 -14.70172 -14.54535 -14.38771 -14.30343 -13.92731 -13.35987 -13.07758 -13.00863 -12.82589 -12.38433 -12.32290 -12.20523 -11.91351 -11.82571 -11.78771 -11.61951 -11.44436 -11.20284 -11.18738 -11.03141 -10.97731 -10.82655 -10.63766 -10.54748 -10.31831 -9.78423 -9.44118 -9.15759 -8.70584 -8.52724 -8.50116 -8.33621 -6.09457 -4.12246 3.06273 3.29416 3.35432 3.39422 3.48167 3.53377 3.85560 4.41844 4.42619 4.51465 4.68660 4.71420 4.87630 4.88270 4.94678 4.97157 5.00343 5.12321 5.14826 5.17759 5.23556 5.27567 5.33491 5.36134 5.44162 5.46337 5.49814 5.50705 5.56227 5.59607 5.61343 5.71140 5.76549 5.85443 5.91158 6.10302 6.28739 6.36316 6.37222 6.66861 6.67402 6.75211 6.86297 6.89056 6.95925 7.52081 7.61974 7.88878 8.05605 8.28351 8.70487 8.93870 9.52600 11.02111 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.037068 B = 0.001684 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.181394 B =16620.386595 C =17047.505730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 C -0.188 4.188 4 N -0.535 5.535 5 C 0.051 3.949 6 C 0.053 3.947 7 N -0.539 5.539 8 C 0.056 3.944 9 C -0.099 4.099 10 C -0.141 4.141 11 C 0.504 3.496 12 O -0.552 6.552 13 N -0.725 5.725 14 C 0.121 3.879 15 C 0.012 3.988 16 C -0.522 4.522 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.057 3.943 25 C 0.055 3.945 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.085 0.915 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.397 0.603 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.022 0.978 47 H 0.022 0.978 48 H 0.262 0.738 49 H 0.041 0.959 50 H 0.078 0.922 51 H 0.076 0.924 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.607 -1.641 -31.321 31.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.247 4.247 4 N -0.259 5.259 5 C -0.077 4.077 6 C -0.075 4.075 7 N -0.264 5.264 8 C -0.071 4.071 9 C -0.137 4.137 10 C -0.181 4.181 11 C 0.289 3.711 12 O -0.431 6.431 13 N -0.375 5.375 14 C -0.001 4.001 15 C -0.026 4.026 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.071 4.071 25 C -0.073 4.073 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.231 0.769 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.040 0.960 47 H 0.041 0.959 48 H 0.071 0.929 49 H 0.059 0.941 50 H 0.097 0.903 51 H 0.094 0.906 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.923 -0.983 -31.255 31.655 hybrid contribution 0.160 0.010 1.020 1.032 sum -4.763 -0.973 -30.235 30.623 Atomic orbital electron populations 1.21873 0.94258 1.02427 1.01776 1.21681 0.95828 0.92497 0.93223 1.22484 1.01605 0.98075 1.02497 1.62426 1.10742 1.50758 1.02003 1.22248 1.00250 0.96342 0.88836 1.22240 0.87416 0.99589 0.98236 1.62114 1.10985 1.51405 1.01887 1.22135 1.00293 0.95128 0.89580 1.21299 1.02415 0.99174 0.90812 1.21628 1.03303 0.99687 0.93509 1.20593 0.78711 0.86994 0.84760 1.90670 1.43144 1.22827 1.86440 1.46366 1.60952 1.22965 1.07195 1.21699 1.00194 0.94106 0.84124 1.19329 0.96821 0.96148 0.90254 1.21062 1.39491 1.04255 0.91240 0.92263 1.24997 0.94947 0.95162 0.99193 1.69953 1.40656 1.18965 1.23739 0.86509 0.77959 0.80757 0.82311 1.20564 1.21160 1.19736 1.22140 0.99975 0.95806 0.89157 1.22161 0.87635 0.99696 0.97793 0.92417 0.91876 0.92278 0.90136 0.92097 0.92421 0.92143 0.93471 0.90080 0.94119 0.89640 0.94714 0.90682 0.90385 0.91235 0.89308 0.89102 0.76938 0.92665 0.92683 0.95968 0.95941 0.92859 0.94122 0.90335 0.90553 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.00 37.16 0.33 -0.53 16 2 C 0.08 0.50 2.96 -67.72 -0.20 0.30 16 3 C -0.19 -1.20 8.49 37.16 0.32 -0.89 16 4 N -0.53 -4.28 4.70 -226.49 -1.06 -5.35 16 5 C 0.05 0.43 4.81 -3.77 -0.02 0.42 16 6 C 0.05 0.50 5.41 -3.77 -0.02 0.48 16 7 N -0.54 -5.14 4.71 -234.46 -1.10 -6.24 16 8 C 0.06 0.52 4.96 -3.82 -0.02 0.50 16 9 C -0.10 -1.12 4.44 -26.73 -0.12 -1.24 16 10 C -0.14 -1.59 5.70 -27.88 -0.16 -1.75 16 11 C 0.50 8.37 7.83 -10.99 -0.09 8.29 16 12 O -0.55 -11.38 15.98 5.56 0.09 -11.30 16 13 N -0.72 -12.60 5.56 -60.29 -0.33 -12.94 16 14 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 15 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 16 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 20 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.06 0.47 5.61 -3.77 -0.02 0.44 16 25 C 0.06 0.42 5.25 -3.77 -0.02 0.40 16 26 H 0.06 0.36 6.36 -51.93 -0.33 0.03 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 30 H 0.06 0.44 6.46 -51.93 -0.34 0.10 16 31 H 0.06 0.39 6.59 -51.93 -0.34 0.05 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.44 6.46 -51.93 -0.34 0.11 16 34 H 0.08 0.63 6.17 -51.93 -0.32 0.31 16 35 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.85 6.34 -51.93 -0.33 0.52 16 37 H 0.03 0.31 8.12 -51.93 -0.42 -0.12 16 38 H 0.07 0.62 8.03 -51.93 -0.42 0.21 16 39 H 0.08 1.03 8.10 -51.93 -0.42 0.60 16 40 H 0.07 0.87 6.45 -51.93 -0.33 0.53 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.40 5.89 8.47 -40.82 -0.35 5.55 16 44 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 51 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 52 H 0.05 0.38 6.60 -51.93 -0.34 0.04 16 LS Contribution 398.89 15.07 6.01 6.01 Total: -1.00 -31.75 398.89 -11.01 -42.75 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -9.73 Total: 0.21 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.59 Total: -4.17 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -1.77 Total: -49.95 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.75 -11.01 -42.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907321517.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.956 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds