Wall clock time and date at job start Tue Mar 31 2020 10:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46894 * 109.47515 * 120.00121 * 2 1 3 5 5 C 1.46953 * 111.00145 * 298.80295 * 4 2 1 6 6 C 1.53050 * 109.36755 * 176.80779 * 5 4 2 7 7 N 1.46960 * 109.36432 * 58.39861 * 6 5 4 8 8 C 1.46899 * 111.00113 * 176.81349 * 7 6 5 9 9 C 1.53004 * 109.46861 * 293.79819 * 8 7 6 10 10 C 1.53000 * 109.47205 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47417 * 180.02562 * 10 9 8 12 12 O 1.21281 * 119.99779 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99764 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99681 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47334 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47417 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99897 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00007 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00094 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00016 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47228 * 90.00009 * 20 18 16 22 22 H 1.48494 * 109.47091 * 210.00168 * 20 18 16 23 23 H 1.48502 * 109.46977 * 330.00385 * 20 18 16 24 24 C 1.46953 * 110.88103 * 300.68355 * 7 6 5 25 25 C 1.46960 * 111.00353 * 174.99903 * 4 2 1 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09005 * 109.48557 * 296.77643 * 5 4 2 34 34 H 1.09001 * 109.49075 * 56.83797 * 5 4 2 35 35 H 1.08997 * 109.48993 * 298.43110 * 6 5 4 36 36 H 1.09004 * 109.49263 * 178.36397 * 6 5 4 37 37 H 1.08995 * 109.47429 * 53.79801 * 8 7 6 38 38 H 1.08998 * 109.46945 * 173.80690 * 8 7 6 39 39 H 1.08997 * 109.47598 * 300.00238 * 9 8 7 40 40 H 1.08999 * 109.47238 * 60.00227 * 9 8 7 41 41 H 1.08997 * 109.47113 * 300.00628 * 10 9 8 42 42 H 1.08999 * 109.46761 * 60.00029 * 10 9 8 43 43 H 0.97000 * 120.00265 * 0.02562 * 13 11 10 44 44 H 1.08997 * 109.47585 * 300.00508 * 14 13 11 45 45 H 1.09007 * 109.46919 * 60.00173 * 14 13 11 46 46 H 1.09007 * 109.47201 * 300.00619 * 15 14 13 47 47 H 1.08999 * 109.46761 * 60.00092 * 15 14 13 48 48 H 0.96999 * 120.00385 * 179.97438 * 19 18 16 49 49 H 1.09005 * 109.48557 * 299.34971 * 24 7 6 50 50 H 1.09003 * 109.50693 * 179.29856 * 24 7 6 51 51 H 1.08994 * 109.49016 * 303.15640 * 25 4 2 52 52 H 1.09001 * 109.48608 * 63.22532 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.5721 -0.0098 2.4213 6 6 2.0345 -0.8044 3.6449 7 7 3.4987 -0.9284 3.6206 8 6 3.9884 -1.6210 4.8200 9 6 3.7201 -0.7563 6.0534 10 6 4.2296 -1.4778 7.3027 11 6 3.9648 -0.6264 8.5177 12 8 3.4217 0.4511 8.3963 13 7 4.3307 -1.0630 9.7391 14 6 4.0738 -0.2351 10.9201 15 6 4.5831 -0.9567 12.1695 16 6 4.3184 -0.1053 13.3844 17 1 3.8348 0.8542 13.2764 18 6 4.6925 -0.5519 14.6340 19 7 5.2810 -1.7207 14.7656 20 14 4.3637 0.5030 16.1401 21 1 3.0268 0.1709 16.6948 22 1 5.4046 0.2396 17.1658 23 1 4.3981 1.9373 15.7568 24 6 3.9463 -1.6111 2.3986 25 6 3.4839 -0.8165 1.1750 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.9999 0.9922 2.4555 34 1 0.4843 0.0586 2.4220 35 1 1.5851 -1.7972 3.6250 36 1 1.7287 -0.2846 4.5530 37 1 3.4713 -2.5747 4.9254 38 1 5.0599 -1.7970 4.7258 39 1 4.2372 0.1974 5.9480 40 1 2.6486 -0.5802 6.1476 41 1 3.7122 -2.4314 7.4079 42 1 5.3011 -1.6543 7.2087 43 1 4.7648 -1.9250 9.8362 44 1 4.5916 0.7183 10.8152 45 1 3.0023 -0.0582 11.0137 46 1 4.0657 -1.9103 12.2746 47 1 5.6546 -1.1332 12.0756 48 1 5.5446 -2.0348 15.6447 49 1 3.5185 -2.6131 2.3645 50 1 5.0341 -1.6798 2.3978 51 1 3.7897 -1.3363 0.2671 52 1 3.9333 0.1763 1.1951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907321517.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:33 Heat of formation + Delta-G solvation = -72.090905 kcal Electronic energy + Delta-G solvation = -25519.967422 eV Core-core repulsion = 21938.506061 eV Total energy + Delta-G solvation = -3581.461360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.82279 -40.49624 -37.87222 -36.60392 -34.80901 -34.63746 -32.40562 -31.89786 -31.44220 -28.50041 -28.13528 -26.79485 -25.38480 -24.75342 -22.99320 -22.23845 -21.70554 -21.16525 -20.10045 -18.59802 -17.99190 -17.35575 -16.98667 -16.65232 -16.44911 -16.28703 -16.00263 -15.76819 -15.64923 -15.34586 -15.14730 -14.80551 -14.50151 -14.36693 -14.31577 -13.78740 -13.43923 -13.22652 -13.18467 -12.93094 -12.82498 -12.65094 -12.58598 -12.54436 -12.49608 -12.27049 -12.22614 -12.10706 -11.86240 -11.68265 -11.66517 -11.47593 -11.44271 -11.31699 -10.77041 -10.60990 -9.98592 -9.36645 -9.17095 -8.24874 -6.35401 1.41219 1.41579 1.53155 1.72402 2.28511 2.46212 2.91091 2.97294 3.09697 3.80114 3.87810 3.89694 4.00365 4.09349 4.19551 4.21658 4.33351 4.35070 4.37293 4.45702 4.48295 4.50385 4.53068 4.62781 4.64529 4.70507 4.75395 4.77864 4.81050 4.85373 4.86972 4.93197 4.95909 5.00305 5.03549 5.15116 5.22050 5.30277 5.31409 5.38098 5.39120 5.51656 5.57796 5.78570 6.02286 6.04059 6.16017 6.19755 6.24445 6.68645 6.77728 7.33939 7.35072 8.86798 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.037068 B = 0.001684 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.181394 B =16620.386595 C =17047.505730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 C -0.182 4.182 4 N -0.541 5.541 5 C 0.056 3.944 6 C 0.056 3.944 7 N -0.552 5.552 8 C 0.064 3.936 9 C -0.092 4.092 10 C -0.127 4.127 11 C 0.501 3.499 12 O -0.596 6.596 13 N -0.721 5.721 14 C 0.140 3.860 15 C 0.022 3.978 16 C -0.549 4.549 17 H 0.057 0.943 18 C 0.008 3.992 19 N -0.925 5.925 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.268 1.268 24 C 0.059 3.941 25 C 0.056 3.944 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.412 0.588 44 H 0.042 0.958 45 H 0.043 0.957 46 H 0.009 0.991 47 H 0.010 0.990 48 H 0.266 0.734 49 H 0.039 0.961 50 H 0.090 0.910 51 H 0.091 0.909 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.365 -2.311 -32.396 32.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.241 4.241 4 N -0.265 5.265 5 C -0.072 4.072 6 C -0.072 4.072 7 N -0.277 5.277 8 C -0.064 4.064 9 C -0.130 4.130 10 C -0.167 4.167 11 C 0.289 3.711 12 O -0.477 6.477 13 N -0.372 5.372 14 C 0.016 3.984 15 C -0.015 4.015 16 C -0.588 4.588 17 H 0.075 0.925 18 C -0.191 4.191 19 N -0.565 5.565 20 Si 0.789 3.211 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.192 1.192 24 C -0.069 4.069 25 C -0.072 4.072 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.248 0.752 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.075 0.925 49 H 0.057 0.943 50 H 0.109 0.891 51 H 0.109 0.891 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.671 -1.680 -32.354 32.733 hybrid contribution 0.083 0.217 1.308 1.328 sum -4.588 -1.463 -31.046 31.418 Atomic orbital electron populations 1.21847 0.93782 1.02254 1.02122 1.21751 0.96215 0.92488 0.92859 1.22426 1.01236 0.97999 1.02455 1.62458 1.11058 1.50869 1.02150 1.22164 1.00430 0.95587 0.89003 1.22177 0.87643 0.99298 0.98125 1.62108 1.10895 1.52083 1.02642 1.22057 1.01299 0.94685 0.88352 1.21198 1.01022 0.98726 0.92071 1.21638 1.05497 0.99351 0.90201 1.21552 0.77151 0.86854 0.85529 1.90655 1.44978 1.25062 1.87028 1.46209 1.61321 1.23183 1.06454 1.21178 0.98922 0.93742 0.84601 1.19142 0.95798 0.95464 0.91136 1.21478 1.39817 1.04699 0.92759 0.92490 1.25862 0.94537 0.96421 1.02287 1.70051 1.41300 1.20392 1.24711 0.85448 0.78132 0.79062 0.78419 1.19747 1.20391 1.19202 1.22181 1.00661 0.95499 0.88550 1.22185 0.87354 0.99359 0.98287 0.92955 0.92261 0.91065 0.89368 0.93193 0.92882 0.91074 0.94654 0.89652 0.94421 0.90831 0.93788 0.89152 0.92625 0.92924 0.86502 0.86189 0.75224 0.93934 0.93906 0.97223 0.97198 0.92518 0.94291 0.89134 0.89116 0.94459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.00 71.98 0.65 -0.89 16 2 C 0.07 0.90 2.96 44.92 0.13 1.04 16 3 C -0.18 -2.19 8.49 71.98 0.61 -1.58 16 4 N -0.54 -8.14 4.70 -870.49 -4.09 -12.23 16 5 C 0.06 0.95 4.81 86.31 0.42 1.36 16 6 C 0.06 1.03 5.41 86.31 0.47 1.50 16 7 N -0.55 -9.94 4.71 -895.71 -4.22 -14.16 16 8 C 0.06 1.04 4.96 86.30 0.43 1.47 16 9 C -0.09 -1.99 4.44 30.60 0.14 -1.85 16 10 C -0.13 -2.58 5.70 29.85 0.17 -2.41 16 11 C 0.50 16.29 7.83 87.66 0.69 16.98 16 12 O -0.60 -24.90 15.98 -3.03 -0.05 -24.95 16 13 N -0.72 -24.65 5.56 -463.06 -2.57 -27.22 16 14 C 0.14 6.10 5.61 86.38 0.48 6.59 16 15 C 0.02 1.12 5.09 29.85 0.15 1.27 16 16 C -0.55 -31.00 9.11 25.60 0.23 -30.76 16 17 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 18 C 0.01 0.44 5.46 84.65 0.46 0.90 16 19 N -0.93 -54.22 13.29 21.45 0.28 -53.93 16 20 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 C 0.06 0.86 5.61 86.31 0.48 1.34 16 25 C 0.06 0.78 5.25 86.31 0.45 1.24 16 26 H 0.05 0.62 6.36 -2.39 -0.02 0.60 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.09 0.95 8.11 -2.39 -0.02 0.93 16 30 H 0.05 0.71 6.46 -2.39 -0.02 0.69 16 31 H 0.05 0.68 6.59 -2.39 -0.02 0.67 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.04 0.67 6.46 -2.38 -0.02 0.66 16 34 H 0.09 1.33 6.17 -2.39 -0.01 1.31 16 35 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 1.51 6.34 -2.38 -0.02 1.50 16 37 H 0.04 0.66 8.12 -2.39 -0.02 0.64 16 38 H 0.09 1.22 8.03 -2.39 -0.02 1.21 16 39 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 40 H 0.05 1.32 6.45 -2.39 -0.02 1.30 16 41 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.41 11.70 8.47 -92.71 -0.79 10.91 16 44 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 46 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 47 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 49 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 50 H 0.09 1.09 8.07 -2.39 -0.02 1.07 16 51 H 0.09 1.00 8.12 -2.39 -0.02 0.98 16 52 H 0.04 0.59 6.60 -2.39 -0.02 0.57 16 Total: -1.00 -68.72 398.89 -2.56 -71.29 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.09 Total: 19.17 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.96 Total: -3.81 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -10.60 Total: -107.55 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.95 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -68.72 -2.56 -71.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907321517.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.803 kcal (2) G-P(sol) polarization free energy of solvation -68.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds