Wall clock time and date at job start Tue Mar 31 2020 10:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46738 * 2 1 4 4 H 1.08998 * 109.47348 * 305.78877 * 3 2 1 5 5 C 1.50710 * 109.46728 * 185.78992 * 3 2 1 6 6 O 1.21282 * 119.99548 * 264.80356 * 5 3 2 7 7 N 1.34774 * 119.99932 * 84.80901 * 5 3 2 8 8 C 1.46498 * 119.99654 * 179.97438 * 7 5 3 9 9 C 1.53001 * 109.46914 * 174.97895 * 8 7 5 10 10 N 1.46507 * 109.47183 * 54.76386 * 9 8 7 11 11 C 1.36935 * 119.99849 * 63.99929 * 10 9 8 12 12 H 1.07999 * 119.99846 * 354.65814 * 11 10 9 13 13 C 1.38815 * 119.99887 * 174.38198 * 11 10 9 14 14 N 1.31622 * 119.99809 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99853 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47273 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47017 * 120.00036 * 15 13 11 18 18 H 1.48499 * 109.46906 * 239.99601 * 15 13 11 19 19 C 1.52995 * 109.47210 * 174.76119 * 9 8 7 20 20 C 1.52997 * 109.47480 * 180.02562 * 19 9 8 21 21 C 1.53006 * 109.47000 * 300.00196 * 20 19 9 22 22 C 1.53001 * 109.46964 * 59.99861 * 21 20 19 23 23 C 1.52996 * 109.47324 * 294.76226 * 9 8 7 24 24 N 1.46900 * 109.47254 * 65.78962 * 3 2 1 25 25 C 1.46896 * 111.00116 * 275.47199 * 24 3 2 26 26 C 1.46898 * 110.99981 * 39.43188 * 24 3 2 27 27 H 1.08997 * 109.46966 * 40.57857 * 1 2 3 28 28 H 1.09002 * 109.46885 * 160.57937 * 1 2 3 29 29 H 1.08999 * 109.46919 * 280.57539 * 1 2 3 30 30 H 1.08997 * 109.47197 * 240.00071 * 2 1 3 31 31 H 1.09000 * 109.46981 * 120.00232 * 2 1 3 32 32 H 0.96998 * 119.99902 * 359.97438 * 7 5 3 33 33 H 1.09005 * 109.47240 * 54.98243 * 8 7 5 34 34 H 1.08996 * 109.47336 * 294.97885 * 8 7 5 35 35 H 0.96997 * 119.99669 * 244.00532 * 10 9 8 36 36 H 0.96998 * 119.99736 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.47291 * 300.00186 * 19 9 8 38 38 H 1.09003 * 109.47200 * 60.00344 * 19 9 8 39 39 H 1.09004 * 109.47831 * 180.02562 * 20 19 9 40 40 H 1.09005 * 109.47289 * 60.00061 * 20 19 9 41 41 H 1.08993 * 109.47068 * 299.99689 * 21 20 19 42 42 H 1.09001 * 109.46829 * 179.97438 * 21 20 19 43 43 H 1.09002 * 109.46747 * 179.97438 * 22 21 20 44 44 H 1.08996 * 109.46978 * 60.00347 * 22 21 20 45 45 H 1.08993 * 109.47695 * 299.99956 * 23 9 8 46 46 H 1.09003 * 109.47361 * 60.00053 * 23 9 8 47 47 H 1.09003 * 109.46603 * 70.15006 * 25 24 3 48 48 H 1.09000 * 109.46967 * 190.14335 * 25 24 3 49 49 H 1.09002 * 109.47352 * 310.14908 * 25 24 3 50 50 H 1.09005 * 109.47755 * 52.88995 * 26 24 3 51 51 H 1.09000 * 109.47588 * 172.89435 * 26 24 3 52 52 H 1.09000 * 109.47120 * 292.88897 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5945 1.9854 -0.8336 5 6 3.5403 1.4449 -0.1433 6 8 4.2435 1.5058 0.8429 7 7 4.1003 1.3795 -1.3675 8 6 5.5587 1.3824 -1.5068 9 6 5.9310 1.1753 -2.9762 10 7 5.2593 2.1857 -3.7974 11 6 5.5616 3.5113 -3.6350 12 1 6.2297 3.8199 -2.8445 13 6 5.0138 4.4579 -4.4899 14 7 4.2042 4.0812 -5.4568 15 14 5.4267 6.2663 -4.2687 16 1 6.3523 6.4256 -3.1185 17 1 6.0755 6.7802 -5.5017 18 1 4.1801 7.0306 -4.0100 19 6 7.4461 1.3083 -3.1421 20 6 7.8184 1.1018 -4.6117 21 6 7.3770 -0.2934 -5.0584 22 6 5.8618 -0.4264 -4.8925 23 6 5.4897 -0.2201 -3.4224 24 7 1.6677 2.0935 1.2632 25 6 0.3025 2.6314 1.1958 26 6 1.8140 1.1687 2.3951 27 1 -0.3633 0.7805 -0.6685 28 1 -0.3633 -0.9692 -0.3417 29 1 -0.3633 0.1886 1.0102 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.5378 1.3305 -2.1562 33 1 5.9826 0.5766 -0.9075 34 1 5.9546 2.3379 -1.1629 35 1 4.6004 1.9156 -4.4560 36 1 3.8217 4.7426 -6.0544 37 1 7.7605 2.3024 -2.8243 38 1 7.9459 0.5566 -2.5313 39 1 8.8979 1.1961 -4.7299 40 1 7.3186 1.8539 -5.2223 41 1 7.8767 -1.0454 -4.4479 42 1 7.6419 -0.4404 -6.1055 43 1 5.5473 -1.4203 -5.2112 44 1 5.3621 0.3256 -5.5031 45 1 5.9894 -0.9719 -2.8116 46 1 4.4103 -0.3149 -3.3042 47 1 -0.4120 1.8083 1.1819 48 1 0.1161 3.2596 2.0668 49 1 0.1903 3.2253 0.2887 50 1 2.8171 0.7423 2.3888 51 1 1.6546 1.7086 3.3284 52 1 1.0787 0.3688 2.3081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115592030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:09 Heat of formation + Delta-G solvation = -28.929526 kcal Electronic energy + Delta-G solvation = -28371.691215 eV Core-core repulsion = 24792.101473 eV Total energy + Delta-G solvation = -3579.589742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.97716 -38.81471 -37.18805 -34.35005 -33.25702 -32.31819 -31.10520 -30.21974 -28.87070 -28.12502 -27.57472 -25.08146 -23.77324 -22.91536 -22.17573 -21.42019 -20.28255 -19.50689 -18.28639 -17.16311 -16.83216 -16.44325 -15.44079 -15.12633 -14.95297 -14.59254 -14.37220 -14.10691 -13.93288 -13.64860 -13.54714 -13.21126 -12.90595 -12.75570 -12.46689 -12.34336 -12.05460 -11.88056 -11.82153 -11.68710 -11.60848 -11.58174 -11.52096 -11.25649 -11.08095 -10.89473 -10.87341 -10.74375 -10.52716 -10.12426 -10.02378 -9.77974 -9.61462 -9.31122 -9.22590 -8.86230 -8.33858 -8.09600 -6.99089 -5.79358 -3.07717 3.10770 3.42666 3.50784 3.51587 3.60268 4.22667 4.58560 4.79767 4.87570 4.97477 5.21817 5.24836 5.28297 5.30006 5.31084 5.37485 5.42818 5.50082 5.58539 5.62867 5.66054 5.68644 5.76311 5.80238 5.85643 5.87138 5.95473 6.00153 6.06091 6.06836 6.13652 6.16126 6.18657 6.22562 6.32445 6.46765 6.54423 6.62460 6.81911 6.84059 6.84609 7.00877 7.01656 7.11887 7.17339 7.22674 7.74187 8.17073 8.38924 8.82605 9.51717 10.04408 10.40970 11.42751 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.011401 B = 0.004865 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.354349 B = 5753.856973 C = 7087.829278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.150 4.150 3 C 0.066 3.934 4 H 0.100 0.900 5 C 0.519 3.481 6 O -0.544 6.544 7 N -0.701 5.701 8 C 0.117 3.883 9 C 0.191 3.809 10 N -0.709 5.709 11 C -0.226 4.226 12 H 0.069 0.931 13 C -0.009 4.009 14 N -0.932 5.932 15 Si 0.899 3.101 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.294 1.294 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.112 4.112 22 C -0.115 4.115 23 C -0.112 4.112 24 N -0.521 5.521 25 C 0.012 3.988 26 C 0.022 3.978 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.401 0.599 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.384 0.616 36 H 0.253 0.747 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.047 0.953 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.039 0.961 48 H 0.066 0.934 49 H 0.067 0.933 50 H 0.083 0.917 51 H 0.062 0.938 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.865 -11.104 7.300 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.189 4.189 3 C -0.046 4.046 4 H 0.118 0.882 5 C 0.303 3.697 6 O -0.422 6.422 7 N -0.352 5.352 8 C -0.009 4.009 9 C 0.099 3.901 10 N -0.351 5.351 11 C -0.357 4.357 12 H 0.087 0.913 13 C -0.205 4.205 14 N -0.581 5.581 15 Si 0.730 3.270 16 H -0.206 1.206 17 H -0.221 1.221 18 H -0.221 1.221 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.153 4.153 23 C -0.150 4.150 24 N -0.244 5.244 25 C -0.136 4.136 26 C -0.126 4.126 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.237 0.763 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.219 0.781 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.057 0.943 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.102 0.898 51 H 0.081 0.919 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.955 -10.479 8.106 13.826 hybrid contribution -0.811 0.495 -0.699 1.179 sum -4.765 -9.984 7.408 13.314 Atomic orbital electron populations 1.22057 0.95215 1.02119 1.01842 1.22127 0.96598 0.96567 1.03610 1.21769 0.93830 0.94778 0.94228 0.88235 1.20268 0.89607 0.76361 0.83456 1.90602 1.63821 1.49910 1.37844 1.45769 1.08346 1.73347 1.07725 1.21831 0.79727 1.00824 0.98538 1.19821 0.92231 0.88965 0.89099 1.42443 1.47334 1.01781 1.43547 1.19124 1.23099 0.83019 1.10481 0.91269 1.24652 1.00415 0.97608 0.97818 1.69654 1.35729 1.32613 1.20083 0.86237 0.77521 0.86091 0.77108 1.20628 1.22058 1.22089 1.21780 0.96437 1.00903 0.96273 1.21376 0.98939 0.97093 0.97288 1.21468 0.96010 0.97641 0.99845 1.21482 0.96338 1.00647 0.96826 1.21683 1.00290 0.96608 0.96455 1.61736 1.24410 1.36176 1.02125 1.22748 0.88525 0.99530 1.02795 1.22540 1.02350 0.94603 0.93113 0.92100 0.92448 0.92232 0.90863 0.90583 0.76326 0.93079 0.92000 0.78124 0.93723 0.91768 0.93788 0.93835 0.89785 0.93290 0.93084 0.93387 0.90698 0.92378 0.92518 0.94275 0.91527 0.91384 0.89833 0.91948 0.95526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.19 37.16 0.30 -1.13 16 2 C -0.15 -1.68 4.86 -26.73 -0.13 -1.81 16 3 C 0.07 0.93 2.30 -68.86 -0.16 0.77 16 4 H 0.10 1.38 7.52 -51.93 -0.39 0.99 16 5 C 0.52 9.06 7.00 -10.98 -0.08 8.98 16 6 O -0.54 -11.21 14.83 5.56 0.08 -11.13 16 7 N -0.70 -12.06 5.08 -60.29 -0.31 -12.37 16 8 C 0.12 2.13 4.39 -4.04 -0.02 2.11 16 9 C 0.19 3.36 0.41 -131.82 -0.05 3.31 16 10 N -0.71 -15.16 3.37 -47.23 -0.16 -15.32 16 11 C -0.23 -5.66 8.68 -15.06 -0.13 -5.79 16 12 H 0.07 1.78 6.77 -52.49 -0.36 1.43 16 13 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 14 N -0.93 -26.17 13.07 55.49 0.73 -25.44 16 15 Si 0.90 21.99 29.55 -169.99 -5.02 16.97 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 C -0.11 -1.97 4.50 -26.74 -0.12 -2.09 16 20 C -0.11 -1.85 5.77 -26.73 -0.15 -2.00 16 21 C -0.11 -1.64 5.92 -26.73 -0.16 -1.80 16 22 C -0.12 -1.73 5.75 -26.71 -0.15 -1.88 16 23 C -0.11 -1.69 4.65 -26.71 -0.12 -1.81 16 24 N -0.52 -7.32 4.67 -244.58 -1.14 -8.46 16 25 C 0.01 0.13 8.89 60.06 0.53 0.67 16 26 C 0.02 0.27 7.99 60.06 0.48 0.75 16 27 H 0.06 0.56 7.55 -51.93 -0.39 0.17 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.53 4.99 -51.93 -0.26 0.27 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.88 6.07 -51.93 -0.32 0.57 16 32 H 0.40 6.70 7.42 -40.82 -0.30 6.40 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.30 7.57 -51.93 -0.39 0.91 16 35 H 0.38 8.82 6.67 -40.82 -0.27 8.55 16 36 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.06 1.23 7.16 -51.93 -0.37 0.86 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.72 7.57 -51.93 -0.39 1.32 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.31 6.94 -51.93 -0.36 0.95 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.82 7.31 -51.93 -0.38 0.44 16 47 H 0.04 0.37 4.63 -51.93 -0.24 0.13 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.07 0.77 7.80 -51.93 -0.40 0.36 16 50 H 0.08 1.23 6.29 -51.93 -0.33 0.90 16 51 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 52 H 0.03 0.28 5.27 -51.93 -0.27 0.01 16 LS Contribution 382.07 15.07 5.76 5.76 Total: -1.00 -28.92 382.07 -9.34 -38.26 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -9.22 Total: 13.81 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.06 Total: -2.07 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.88 Total: -61.59 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.92 -9.34 -38.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115592030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.333 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds