Wall clock time and date at job start Tue Mar 31 2020 10:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46738 * 2 1 4 4 H 1.08998 * 109.47348 * 305.78877 * 3 2 1 5 5 C 1.50710 * 109.46728 * 185.78992 * 3 2 1 6 6 O 1.21282 * 119.99548 * 264.80356 * 5 3 2 7 7 N 1.34774 * 119.99932 * 84.80901 * 5 3 2 8 8 C 1.46498 * 119.99654 * 179.97438 * 7 5 3 9 9 C 1.53001 * 109.46914 * 174.97895 * 8 7 5 10 10 N 1.46507 * 109.47183 * 54.76386 * 9 8 7 11 11 C 1.36935 * 119.99849 * 63.99929 * 10 9 8 12 12 H 1.07999 * 119.99846 * 354.65814 * 11 10 9 13 13 C 1.38815 * 119.99887 * 174.38198 * 11 10 9 14 14 N 1.31622 * 119.99809 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99853 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47273 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47017 * 120.00036 * 15 13 11 18 18 H 1.48499 * 109.46906 * 239.99601 * 15 13 11 19 19 C 1.52995 * 109.47210 * 174.76119 * 9 8 7 20 20 C 1.52997 * 109.47480 * 180.02562 * 19 9 8 21 21 C 1.53006 * 109.47000 * 300.00196 * 20 19 9 22 22 C 1.53001 * 109.46964 * 59.99861 * 21 20 19 23 23 C 1.52996 * 109.47324 * 294.76226 * 9 8 7 24 24 N 1.46900 * 109.47254 * 65.78962 * 3 2 1 25 25 C 1.46896 * 111.00116 * 275.47199 * 24 3 2 26 26 C 1.46898 * 110.99981 * 39.43188 * 24 3 2 27 27 H 1.08997 * 109.46966 * 40.57857 * 1 2 3 28 28 H 1.09002 * 109.46885 * 160.57937 * 1 2 3 29 29 H 1.08999 * 109.46919 * 280.57539 * 1 2 3 30 30 H 1.08997 * 109.47197 * 240.00071 * 2 1 3 31 31 H 1.09000 * 109.46981 * 120.00232 * 2 1 3 32 32 H 0.96998 * 119.99902 * 359.97438 * 7 5 3 33 33 H 1.09005 * 109.47240 * 54.98243 * 8 7 5 34 34 H 1.08996 * 109.47336 * 294.97885 * 8 7 5 35 35 H 0.96997 * 119.99669 * 244.00532 * 10 9 8 36 36 H 0.96998 * 119.99736 * 180.02562 * 14 13 11 37 37 H 1.09002 * 109.47291 * 300.00186 * 19 9 8 38 38 H 1.09003 * 109.47200 * 60.00344 * 19 9 8 39 39 H 1.09004 * 109.47831 * 180.02562 * 20 19 9 40 40 H 1.09005 * 109.47289 * 60.00061 * 20 19 9 41 41 H 1.08993 * 109.47068 * 299.99689 * 21 20 19 42 42 H 1.09001 * 109.46829 * 179.97438 * 21 20 19 43 43 H 1.09002 * 109.46747 * 179.97438 * 22 21 20 44 44 H 1.08996 * 109.46978 * 60.00347 * 22 21 20 45 45 H 1.08993 * 109.47695 * 299.99956 * 23 9 8 46 46 H 1.09003 * 109.47361 * 60.00053 * 23 9 8 47 47 H 1.09003 * 109.46603 * 70.15006 * 25 24 3 48 48 H 1.09000 * 109.46967 * 190.14335 * 25 24 3 49 49 H 1.09002 * 109.47352 * 310.14908 * 25 24 3 50 50 H 1.09005 * 109.47755 * 52.88995 * 26 24 3 51 51 H 1.09000 * 109.47588 * 172.89435 * 26 24 3 52 52 H 1.09000 * 109.47120 * 292.88897 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5945 1.9854 -0.8336 5 6 3.5403 1.4449 -0.1433 6 8 4.2435 1.5058 0.8429 7 7 4.1003 1.3795 -1.3675 8 6 5.5587 1.3824 -1.5068 9 6 5.9310 1.1753 -2.9762 10 7 5.2593 2.1857 -3.7974 11 6 5.5616 3.5113 -3.6350 12 1 6.2297 3.8199 -2.8445 13 6 5.0138 4.4579 -4.4899 14 7 4.2042 4.0812 -5.4568 15 14 5.4267 6.2663 -4.2687 16 1 6.3523 6.4256 -3.1185 17 1 6.0755 6.7802 -5.5017 18 1 4.1801 7.0306 -4.0100 19 6 7.4461 1.3083 -3.1421 20 6 7.8184 1.1018 -4.6117 21 6 7.3770 -0.2934 -5.0584 22 6 5.8618 -0.4264 -4.8925 23 6 5.4897 -0.2201 -3.4224 24 7 1.6677 2.0935 1.2632 25 6 0.3025 2.6314 1.1958 26 6 1.8140 1.1687 2.3951 27 1 -0.3633 0.7805 -0.6685 28 1 -0.3633 -0.9692 -0.3417 29 1 -0.3633 0.1886 1.0102 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.5378 1.3305 -2.1562 33 1 5.9826 0.5766 -0.9075 34 1 5.9546 2.3379 -1.1629 35 1 4.6004 1.9156 -4.4560 36 1 3.8217 4.7426 -6.0544 37 1 7.7605 2.3024 -2.8243 38 1 7.9459 0.5566 -2.5313 39 1 8.8979 1.1961 -4.7299 40 1 7.3186 1.8539 -5.2223 41 1 7.8767 -1.0454 -4.4479 42 1 7.6419 -0.4404 -6.1055 43 1 5.5473 -1.4203 -5.2112 44 1 5.3621 0.3256 -5.5031 45 1 5.9894 -0.9719 -2.8116 46 1 4.4103 -0.3149 -3.3042 47 1 -0.4120 1.8083 1.1819 48 1 0.1161 3.2596 2.0668 49 1 0.1903 3.2253 0.2887 50 1 2.8171 0.7423 2.3888 51 1 1.6546 1.7086 3.3284 52 1 1.0787 0.3688 2.3081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115592030.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:08 Heat of formation + Delta-G solvation = -47.816876 kcal Electronic energy + Delta-G solvation = -28372.510232 eV Core-core repulsion = 24792.101473 eV Total energy + Delta-G solvation = -3580.408759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.27402 -40.16575 -38.41581 -35.81500 -35.02829 -33.33793 -32.65764 -31.54238 -30.43942 -29.28365 -28.56107 -26.42677 -25.69441 -23.81851 -23.49139 -22.58792 -21.62955 -20.78635 -19.77400 -19.01370 -18.14416 -17.52674 -16.83410 -16.43861 -16.20793 -16.01246 -15.79855 -15.52826 -15.41608 -15.06597 -14.84199 -14.53650 -14.29968 -13.78581 -13.61546 -13.39563 -13.37774 -13.23380 -13.08520 -12.91498 -12.85821 -12.80368 -12.62227 -12.57925 -12.53476 -12.48312 -12.19169 -12.02536 -11.87136 -11.76626 -11.66383 -11.30942 -11.07805 -10.80431 -10.68828 -10.54388 -9.82773 -9.10207 -8.88848 -7.87041 -5.10645 1.43324 1.47664 1.53251 1.75251 2.32188 2.59392 3.16396 3.46233 3.79532 3.82556 3.87201 3.95213 4.00959 4.04849 4.15568 4.33538 4.36749 4.40568 4.43126 4.50242 4.51625 4.66241 4.68679 4.72214 4.77587 4.79014 4.81640 4.83030 4.93010 4.98302 4.99418 5.03840 5.09341 5.11442 5.13095 5.19481 5.23146 5.34671 5.48304 5.51283 5.52666 5.61361 5.63595 5.74029 5.82464 5.99974 6.16585 6.36512 6.77138 7.42703 7.45556 8.18055 8.44524 9.35548 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.011401 B = 0.004865 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.354349 B = 5753.856973 C = 7087.829278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.142 4.142 3 C 0.072 3.928 4 H 0.100 0.900 5 C 0.512 3.488 6 O -0.579 6.579 7 N -0.699 5.699 8 C 0.125 3.875 9 C 0.190 3.810 10 N -0.707 5.707 11 C -0.202 4.202 12 H 0.059 0.941 13 C -0.062 4.062 14 N -0.959 5.959 15 Si 0.943 3.057 16 H -0.280 1.280 17 H -0.297 1.297 18 H -0.300 1.300 19 C -0.113 4.113 20 C -0.106 4.106 21 C -0.107 4.107 22 C -0.112 4.112 23 C -0.106 4.106 24 N -0.550 5.550 25 C 0.013 3.987 26 C 0.027 3.973 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.405 0.595 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.377 0.623 36 H 0.246 0.754 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.041 0.959 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.073 0.927 49 H 0.063 0.937 50 H 0.057 0.943 51 H 0.069 0.931 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.507 -13.379 7.891 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.182 4.182 3 C -0.040 4.040 4 H 0.118 0.882 5 C 0.299 3.701 6 O -0.459 6.459 7 N -0.349 5.349 8 C -0.002 4.002 9 C 0.099 3.901 10 N -0.348 5.348 11 C -0.335 4.335 12 H 0.077 0.923 13 C -0.255 4.255 14 N -0.611 5.611 15 Si 0.776 3.224 16 H -0.205 1.205 17 H -0.225 1.225 18 H -0.228 1.228 19 C -0.153 4.153 20 C -0.144 4.144 21 C -0.145 4.145 22 C -0.150 4.150 23 C -0.144 4.144 24 N -0.274 5.274 25 C -0.134 4.134 26 C -0.120 4.120 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.241 0.759 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.211 0.789 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.100 0.900 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.087 0.913 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.586 -12.773 8.717 16.130 hybrid contribution -0.536 1.173 -0.797 1.516 sum -5.123 -11.600 7.920 14.951 Atomic orbital electron populations 1.22014 0.93295 1.03066 1.02327 1.22078 0.98118 0.94307 1.03669 1.21719 0.90994 0.96817 0.94492 0.88216 1.21012 0.91230 0.75131 0.82750 1.90582 1.65033 1.51443 1.38842 1.45783 1.07935 1.73161 1.08041 1.21673 0.80469 0.99302 0.98716 1.20023 0.92279 0.89765 0.88027 1.42450 1.47352 1.01311 1.43656 1.19202 1.20848 0.84688 1.08758 0.92285 1.25111 1.01725 1.00033 0.98622 1.69748 1.37405 1.32795 1.21138 0.85511 0.76816 0.83465 0.76643 1.20501 1.22502 1.22807 1.21768 0.96134 1.00280 0.97129 1.21301 0.99338 0.97664 0.96053 1.21448 0.95864 0.96340 1.00822 1.21444 0.96346 1.01138 0.96042 1.21649 1.00977 0.94795 0.96929 1.61685 1.26363 1.36999 1.02314 1.22777 0.87466 1.00198 1.02927 1.22461 1.01479 0.95090 0.93014 0.92018 0.90955 0.91633 0.90458 0.90881 0.75943 0.91869 0.95596 0.78885 0.94473 0.94489 0.91037 0.92562 0.94026 0.90820 0.92272 0.90673 0.93778 0.90014 0.91894 0.92179 0.90877 0.91811 0.92380 0.91256 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.19 71.99 0.59 -1.73 16 2 C -0.14 -2.91 4.86 30.60 0.15 -2.76 16 3 C 0.07 1.95 2.30 44.17 0.10 2.05 16 4 H 0.10 2.67 7.52 -2.39 -0.02 2.66 16 5 C 0.51 17.86 7.00 87.66 0.61 18.47 16 6 O -0.58 -24.14 14.83 -3.04 -0.05 -24.18 16 7 N -0.70 -23.89 5.08 -463.05 -2.35 -26.24 16 8 C 0.13 4.53 4.39 86.38 0.38 4.91 16 9 C 0.19 6.55 0.41 3.60 0.00 6.56 16 10 N -0.71 -30.62 3.37 -303.34 -1.02 -31.64 16 11 C -0.20 -10.37 8.68 84.03 0.73 -9.65 16 12 H 0.06 3.13 6.77 -2.91 -0.02 3.11 16 13 C -0.06 -3.41 5.50 84.86 0.47 -2.95 16 14 N -0.96 -55.08 13.07 21.65 0.28 -54.79 16 15 Si 0.94 46.29 29.55 68.60 2.03 48.31 16 16 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 17 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 18 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 19 C -0.11 -3.83 4.50 30.59 0.14 -3.69 16 20 C -0.11 -3.48 5.77 30.60 0.18 -3.30 16 21 C -0.11 -2.86 5.92 30.60 0.18 -2.67 16 22 C -0.11 -3.09 5.75 30.61 0.18 -2.91 16 23 C -0.11 -2.92 4.65 30.61 0.14 -2.77 16 24 N -0.55 -14.88 4.67 -927.73 -4.33 -19.20 16 25 C 0.01 0.28 8.89 127.69 1.14 1.41 16 26 C 0.03 0.65 7.99 127.69 1.02 1.67 16 27 H 0.06 0.97 7.55 -2.39 -0.02 0.95 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.94 4.99 -2.39 -0.01 0.93 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.55 6.07 -2.39 -0.01 1.54 16 32 H 0.40 13.34 7.42 -92.71 -0.69 12.65 16 33 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.03 1.12 7.57 -2.39 -0.02 1.10 16 35 H 0.38 17.58 6.67 -92.71 -0.62 16.96 16 36 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 37 H 0.04 1.43 7.16 -2.39 -0.02 1.41 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.04 1.72 7.57 -2.38 -0.02 1.70 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.04 1.50 6.94 -2.39 -0.02 1.48 16 45 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 46 H 0.06 1.68 7.31 -2.39 -0.02 1.66 16 47 H 0.06 0.98 4.63 -2.39 -0.01 0.96 16 48 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.06 1.35 7.80 -2.39 -0.02 1.33 16 50 H 0.06 1.70 6.29 -2.38 -0.02 1.68 16 51 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 52 H 0.05 0.93 5.27 -2.39 -0.01 0.92 16 Total: -1.00 -64.17 382.07 0.16 -64.01 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: -0.40 Total: 41.13 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 6.00 Total: 2.62 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -7.42 Total: -131.89 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.05 Total: -24.18 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -64.17 0.16 -64.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115592030.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.193 kcal (2) G-P(sol) polarization free energy of solvation -64.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds