Wall clock time and date at job start Tue Mar 31 2020 10:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.58787 * 2 1 4 4 C 1.53197 * 109.70545 * 239.64675 * 2 1 3 5 5 C 1.53103 * 109.33236 * 185.50868 * 4 2 1 6 6 C 1.53045 * 109.50163 * 61.34458 * 5 4 2 7 7 H 1.09005 * 109.49656 * 178.68628 * 6 5 4 8 8 N 1.46496 * 109.50115 * 58.61776 * 6 5 4 9 9 C 1.34775 * 119.99965 * 155.06698 * 8 6 5 10 10 O 1.21275 * 120.00420 * 359.97438 * 9 8 6 11 11 C 1.50704 * 119.99816 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.46947 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.47115 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47115 * 180.02562 * 13 12 11 15 15 N 1.46897 * 109.46694 * 180.02562 * 14 13 12 16 16 C 1.46895 * 111.00266 * 66.05275 * 15 14 13 17 17 C 1.46909 * 110.99675 * 190.00056 * 15 14 13 18 18 C 1.53197 * 109.33648 * 298.65097 * 6 5 4 19 19 N 1.46925 * 109.58461 * 120.28571 * 2 1 3 20 20 C 1.36930 * 120.63217 * 353.51909 * 19 2 1 21 21 H 1.08003 * 120.00454 * 29.03399 * 20 19 2 22 22 C 1.38818 * 120.00174 * 209.04079 * 20 19 2 23 23 N 1.31626 * 119.99775 * 15.00801 * 22 20 19 24 24 Si 1.86798 * 120.00298 * 195.00558 * 22 20 19 25 25 H 1.48502 * 109.46976 * 59.99880 * 24 22 20 26 26 H 1.48492 * 109.47212 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47323 * 300.00376 * 24 22 20 28 28 H 1.08998 * 109.47296 * 299.71652 * 1 2 3 29 29 H 1.09004 * 109.46765 * 59.71113 * 1 2 3 30 30 H 1.08993 * 109.47167 * 179.71166 * 1 2 3 31 31 H 1.09003 * 109.49283 * 305.45978 * 4 2 1 32 32 H 1.09003 * 109.49470 * 65.52309 * 4 2 1 33 33 H 1.08998 * 109.44926 * 301.35173 * 5 4 2 34 34 H 1.09002 * 109.50414 * 181.36551 * 5 4 2 35 35 H 0.97001 * 119.99670 * 335.06246 * 8 6 5 36 36 H 1.09006 * 109.47115 * 60.00047 * 11 9 8 37 37 H 1.08997 * 109.46957 * 299.99575 * 11 9 8 38 38 H 1.09003 * 109.47144 * 60.00682 * 12 11 9 39 39 H 1.08997 * 109.47305 * 299.99803 * 12 11 9 40 40 H 1.08992 * 109.47183 * 300.00698 * 13 12 11 41 41 H 1.09003 * 109.46305 * 60.00477 * 13 12 11 42 42 H 1.08997 * 109.47305 * 300.00112 * 14 13 12 43 43 H 1.08997 * 109.46718 * 60.00417 * 14 13 12 44 44 H 1.08998 * 109.47358 * 59.99628 * 16 15 14 45 45 H 1.09000 * 109.47607 * 179.97438 * 16 15 14 46 46 H 1.09000 * 109.46963 * 299.99489 * 16 15 14 47 47 H 1.09004 * 109.46958 * 60.00466 * 17 15 14 48 48 H 1.08998 * 109.46959 * 180.02562 * 17 15 14 49 49 H 1.08995 * 109.47146 * 300.00259 * 17 15 14 50 50 H 1.09003 * 109.58728 * 174.44237 * 18 6 5 51 51 H 1.08998 * 109.58553 * 294.71930 * 18 6 5 52 52 H 0.96990 * 119.99418 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0466 -0.7288 -1.2446 5 6 3.5713 -0.8446 -1.1678 6 6 3.9602 -1.6609 0.0670 7 1 5.0446 -1.7630 0.1088 8 7 3.3466 -2.9888 -0.0115 9 6 3.9033 -4.0281 0.6415 10 8 4.9125 -3.8641 1.2938 11 6 3.2723 -5.3943 0.5603 12 6 4.0959 -6.3861 1.3843 13 6 3.4550 -7.7730 1.3023 14 6 4.2782 -8.7648 2.1268 15 7 3.6631 -10.0964 2.0476 16 6 3.7385 -10.6307 0.6813 17 6 4.2812 -11.0197 3.0087 18 6 3.4653 -0.9426 1.3264 19 7 2.0225 -0.6981 1.1953 20 6 1.1534 -1.1127 2.1689 21 1 0.1364 -1.3693 1.9113 22 6 1.5793 -1.2029 3.4870 23 7 2.7011 -0.6223 3.8573 24 14 0.5606 -2.1482 4.7352 25 1 0.4342 -3.5628 4.3014 26 1 1.2279 -2.0952 6.0607 27 1 -0.7897 -1.5387 4.8355 28 1 -0.3634 0.5094 0.8925 29 1 -0.3633 0.5183 -0.8874 30 1 -0.3633 -1.0276 -0.0052 31 1 1.6080 -1.7257 -1.2906 32 1 1.7684 -0.1674 -2.1365 33 1 4.0078 0.1516 -1.0968 34 1 3.9441 -1.3413 -2.0636 35 1 2.5395 -3.1201 -0.5334 36 1 3.2451 -5.7207 -0.4794 37 1 2.2569 -5.3494 0.9539 38 1 4.1235 -6.0599 2.4240 39 1 5.1112 -6.4308 0.9903 40 1 2.4398 -7.7280 1.6964 41 1 3.4270 -8.0994 0.2627 42 1 5.2935 -8.8099 1.7330 43 1 4.3057 -8.4381 3.1663 44 1 4.7827 -10.7095 0.3791 45 1 3.2764 -11.6175 0.6510 46 1 3.2125 -9.9618 0.0001 47 1 4.1497 -10.6336 4.0196 48 1 3.8075 -11.9981 2.9287 49 1 5.3450 -11.1125 2.7907 50 1 3.6523 -1.5667 2.2003 51 1 3.9904 0.0063 1.4360 52 1 2.9988 -0.6857 4.7782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132434340.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:22 Heat of formation + Delta-G solvation = -29.284621 kcal Electronic energy + Delta-G solvation = -27310.057486 eV Core-core repulsion = 23730.452346 eV Total energy + Delta-G solvation = -3579.605141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.45043 -38.01420 -37.48713 -34.37048 -33.91841 -32.68656 -30.87783 -29.88481 -29.27510 -27.80934 -26.26032 -25.22041 -24.71063 -22.22114 -22.08663 -20.82568 -20.47593 -19.94888 -18.66384 -16.72156 -16.19904 -16.05077 -15.62921 -15.30283 -15.18951 -14.90652 -14.61873 -14.09058 -13.84224 -13.81875 -13.37047 -13.15262 -12.91881 -12.65113 -12.61404 -12.42371 -12.30692 -12.05044 -11.90566 -11.78022 -11.23126 -11.18577 -11.14863 -11.12149 -10.93646 -10.90033 -10.80239 -10.66028 -10.41995 -10.36604 -10.30260 -9.92773 -9.50245 -9.42028 -9.13849 -8.56851 -8.40555 -8.25536 -6.56081 -5.70651 -3.14979 3.31916 3.41175 3.47445 3.48605 3.69507 3.94730 4.53583 4.79004 4.92105 4.97607 5.12167 5.15855 5.25432 5.33095 5.34551 5.38985 5.42193 5.46236 5.53356 5.54126 5.55026 5.62671 5.63424 5.65363 5.79577 5.84800 5.96677 6.02847 6.04976 6.14684 6.19252 6.35408 6.37122 6.37928 6.47381 6.49638 6.57049 6.64152 6.75177 6.81877 6.83764 6.96273 7.07775 7.16773 7.46803 7.75758 7.87178 8.23178 8.53415 8.93989 9.27744 9.92360 10.48540 11.37086 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.003586 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.630595 B = 7805.994223 C = 8986.557245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.023 0.977 4 C -0.129 4.129 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.073 0.927 8 N -0.703 5.703 9 C 0.512 3.488 10 O -0.551 6.551 11 C -0.138 4.138 12 C -0.101 4.101 13 C -0.116 4.116 14 C 0.053 3.947 15 N -0.550 5.550 16 C 0.021 3.979 17 C 0.024 3.976 18 C 0.162 3.838 19 N -0.582 5.582 20 C -0.251 4.251 21 H 0.067 0.933 22 C 0.006 3.994 23 N -0.900 5.900 24 Si 0.897 3.103 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.284 1.284 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.394 0.606 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.034 0.966 43 H 0.076 0.924 44 H 0.024 0.976 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.024 0.976 50 H 0.097 0.903 51 H 0.022 0.978 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 -13.366 -10.098 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.012 3.988 7 H 0.091 0.909 8 N -0.353 5.353 9 C 0.298 3.702 10 O -0.429 6.429 11 C -0.178 4.178 12 C -0.139 4.139 13 C -0.154 4.154 14 C -0.074 4.074 15 N -0.274 5.274 16 C -0.127 4.127 17 C -0.124 4.124 18 C 0.035 3.965 19 N -0.305 5.305 20 C -0.380 4.380 21 H 0.085 0.915 22 C -0.193 4.193 23 N -0.544 5.544 24 Si 0.727 3.273 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.210 1.210 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.228 0.772 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.042 0.958 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.042 0.958 50 H 0.115 0.885 51 H 0.040 0.960 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.633 -13.170 -9.318 16.215 hybrid contribution -0.044 -0.559 0.284 0.629 sum 1.590 -13.729 -9.033 16.511 Atomic orbital electron populations 1.21791 0.96152 1.01172 1.00163 1.20456 0.92839 0.93622 0.87266 0.95899 1.22069 0.95178 1.00650 0.99002 1.21696 0.96955 1.00110 0.96874 1.21734 0.96874 0.82170 0.98009 0.90922 1.45866 1.29500 1.08638 1.51283 1.20469 0.84503 0.86276 0.78997 1.90660 1.25792 1.85396 1.41053 1.21621 1.01377 0.92979 1.01852 1.21258 0.98857 0.92537 1.01298 1.21620 1.00150 0.93833 0.99749 1.22186 0.95707 0.88267 1.01254 1.61993 1.56484 1.02997 1.05888 1.22436 0.99720 1.00516 0.90034 1.22380 0.96727 0.96672 0.96657 1.21178 0.83621 0.97002 0.94665 1.44026 1.02671 1.64852 1.18979 1.19037 0.94683 1.38135 0.86193 0.91524 1.25052 0.97671 0.99611 0.96946 1.69976 1.23263 1.44240 1.16873 0.86467 0.79567 0.80275 0.81017 1.21088 1.21720 1.21036 0.92055 0.94479 0.92975 0.92660 0.92988 0.91296 0.93160 0.77186 0.89822 0.88932 0.90971 0.91600 0.90965 0.92106 0.94783 0.90542 0.95789 0.91651 0.90937 0.91268 0.91513 0.95783 0.88460 0.95967 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.95 37.16 0.30 -2.14 16 2 C 0.16 3.25 3.49 -67.60 -0.24 3.01 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -2.06 5.21 -26.58 -0.14 -2.20 16 5 C -0.12 -1.88 5.59 -26.65 -0.15 -2.03 16 6 C 0.12 2.27 2.81 -67.81 -0.19 2.08 16 7 H 0.07 1.46 7.58 -51.93 -0.39 1.06 16 8 N -0.70 -12.45 4.92 -53.69 -0.26 -12.72 16 9 C 0.51 9.48 7.80 -10.98 -0.09 9.39 16 10 O -0.55 -12.37 15.65 5.56 0.09 -12.28 16 11 C -0.14 -1.93 5.70 -27.88 -0.16 -2.09 16 12 C -0.10 -1.37 4.50 -26.73 -0.12 -1.50 16 13 C -0.12 -1.30 5.14 -26.73 -0.14 -1.44 16 14 C 0.05 0.59 4.96 -3.83 -0.02 0.57 16 15 N -0.55 -5.77 5.02 -251.27 -1.26 -7.03 16 16 C 0.02 0.19 9.32 60.06 0.56 0.75 16 17 C 0.02 0.21 9.57 60.07 0.57 0.79 16 18 C 0.16 3.89 4.89 -3.71 -0.02 3.87 16 19 N -0.58 -13.82 2.91 -164.77 -0.48 -14.30 16 20 C -0.25 -6.60 8.60 -15.06 -0.13 -6.73 16 21 H 0.07 1.71 6.21 -52.48 -0.33 1.38 16 22 C 0.01 0.17 4.96 -17.43 -0.09 0.09 16 23 N -0.90 -26.54 11.14 55.49 0.62 -25.92 16 24 Si 0.90 22.01 29.58 -169.99 -5.03 16.98 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 28 H 0.06 1.22 7.62 -51.93 -0.40 0.82 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.94 7.44 -51.93 -0.39 0.55 16 31 H 0.05 0.85 6.40 -51.93 -0.33 0.52 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.39 6.19 6.77 -40.82 -0.28 5.91 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 39 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.61 6.55 -51.93 -0.34 0.27 16 42 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 43 H 0.08 0.87 8.06 -51.93 -0.42 0.46 16 44 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 46 H 0.07 0.61 6.47 -51.93 -0.34 0.28 16 47 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 48 H 0.07 0.51 8.12 -51.93 -0.42 0.08 16 49 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 50 H 0.10 2.76 6.06 -51.93 -0.31 2.45 16 51 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -31.33 396.74 -10.22 -41.56 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -9.83 Total: 5.32 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.04 Total: 2.42 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -1.39 Total: -59.97 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.33 -10.22 -41.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132434340.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.271 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds