Wall clock time and date at job start Tue Mar 31 2020 10:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.58787 * 2 1 4 4 C 1.53197 * 109.70545 * 239.64675 * 2 1 3 5 5 C 1.53103 * 109.33236 * 185.50868 * 4 2 1 6 6 C 1.53045 * 109.50163 * 61.34458 * 5 4 2 7 7 H 1.09005 * 109.49656 * 178.68628 * 6 5 4 8 8 N 1.46496 * 109.50115 * 58.61776 * 6 5 4 9 9 C 1.34775 * 119.99965 * 155.06698 * 8 6 5 10 10 O 1.21275 * 120.00420 * 359.97438 * 9 8 6 11 11 C 1.50704 * 119.99816 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.46947 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.47115 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47115 * 180.02562 * 13 12 11 15 15 N 1.46897 * 109.46694 * 180.02562 * 14 13 12 16 16 C 1.46895 * 111.00266 * 66.05275 * 15 14 13 17 17 C 1.46909 * 110.99675 * 190.00056 * 15 14 13 18 18 C 1.53197 * 109.33648 * 298.65097 * 6 5 4 19 19 N 1.46925 * 109.58461 * 120.28571 * 2 1 3 20 20 C 1.36930 * 120.63217 * 353.51909 * 19 2 1 21 21 H 1.08003 * 120.00454 * 29.03399 * 20 19 2 22 22 C 1.38818 * 120.00174 * 209.04079 * 20 19 2 23 23 N 1.31626 * 119.99775 * 15.00801 * 22 20 19 24 24 Si 1.86798 * 120.00298 * 195.00558 * 22 20 19 25 25 H 1.48502 * 109.46976 * 59.99880 * 24 22 20 26 26 H 1.48492 * 109.47212 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47323 * 300.00376 * 24 22 20 28 28 H 1.08998 * 109.47296 * 299.71652 * 1 2 3 29 29 H 1.09004 * 109.46765 * 59.71113 * 1 2 3 30 30 H 1.08993 * 109.47167 * 179.71166 * 1 2 3 31 31 H 1.09003 * 109.49283 * 305.45978 * 4 2 1 32 32 H 1.09003 * 109.49470 * 65.52309 * 4 2 1 33 33 H 1.08998 * 109.44926 * 301.35173 * 5 4 2 34 34 H 1.09002 * 109.50414 * 181.36551 * 5 4 2 35 35 H 0.97001 * 119.99670 * 335.06246 * 8 6 5 36 36 H 1.09006 * 109.47115 * 60.00047 * 11 9 8 37 37 H 1.08997 * 109.46957 * 299.99575 * 11 9 8 38 38 H 1.09003 * 109.47144 * 60.00682 * 12 11 9 39 39 H 1.08997 * 109.47305 * 299.99803 * 12 11 9 40 40 H 1.08992 * 109.47183 * 300.00698 * 13 12 11 41 41 H 1.09003 * 109.46305 * 60.00477 * 13 12 11 42 42 H 1.08997 * 109.47305 * 300.00112 * 14 13 12 43 43 H 1.08997 * 109.46718 * 60.00417 * 14 13 12 44 44 H 1.08998 * 109.47358 * 59.99628 * 16 15 14 45 45 H 1.09000 * 109.47607 * 179.97438 * 16 15 14 46 46 H 1.09000 * 109.46963 * 299.99489 * 16 15 14 47 47 H 1.09004 * 109.46958 * 60.00466 * 17 15 14 48 48 H 1.08998 * 109.46959 * 180.02562 * 17 15 14 49 49 H 1.08995 * 109.47146 * 300.00259 * 17 15 14 50 50 H 1.09003 * 109.58728 * 174.44237 * 18 6 5 51 51 H 1.08998 * 109.58553 * 294.71930 * 18 6 5 52 52 H 0.96990 * 119.99418 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0466 -0.7288 -1.2446 5 6 3.5713 -0.8446 -1.1678 6 6 3.9602 -1.6609 0.0670 7 1 5.0446 -1.7630 0.1088 8 7 3.3466 -2.9888 -0.0115 9 6 3.9033 -4.0281 0.6415 10 8 4.9125 -3.8641 1.2938 11 6 3.2723 -5.3943 0.5603 12 6 4.0959 -6.3861 1.3843 13 6 3.4550 -7.7730 1.3023 14 6 4.2782 -8.7648 2.1268 15 7 3.6631 -10.0964 2.0476 16 6 3.7385 -10.6307 0.6813 17 6 4.2812 -11.0197 3.0087 18 6 3.4653 -0.9426 1.3264 19 7 2.0225 -0.6981 1.1953 20 6 1.1534 -1.1127 2.1689 21 1 0.1364 -1.3693 1.9113 22 6 1.5793 -1.2029 3.4870 23 7 2.7011 -0.6223 3.8573 24 14 0.5606 -2.1482 4.7352 25 1 0.4342 -3.5628 4.3014 26 1 1.2279 -2.0952 6.0607 27 1 -0.7897 -1.5387 4.8355 28 1 -0.3634 0.5094 0.8925 29 1 -0.3633 0.5183 -0.8874 30 1 -0.3633 -1.0276 -0.0052 31 1 1.6080 -1.7257 -1.2906 32 1 1.7684 -0.1674 -2.1365 33 1 4.0078 0.1516 -1.0968 34 1 3.9441 -1.3413 -2.0636 35 1 2.5395 -3.1201 -0.5334 36 1 3.2451 -5.7207 -0.4794 37 1 2.2569 -5.3494 0.9539 38 1 4.1235 -6.0599 2.4240 39 1 5.1112 -6.4308 0.9903 40 1 2.4398 -7.7280 1.6964 41 1 3.4270 -8.0994 0.2627 42 1 5.2935 -8.8099 1.7330 43 1 4.3057 -8.4381 3.1663 44 1 4.7827 -10.7095 0.3791 45 1 3.2764 -11.6175 0.6510 46 1 3.2125 -9.9618 0.0001 47 1 4.1497 -10.6336 4.0196 48 1 3.8075 -11.9981 2.9287 49 1 5.3450 -11.1125 2.7907 50 1 3.6523 -1.5667 2.2003 51 1 3.9904 0.0063 1.4360 52 1 2.9988 -0.6857 4.7782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132434340.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:21 Heat of formation + Delta-G solvation = -50.179737 kcal Electronic energy + Delta-G solvation = -27310.963567 eV Core-core repulsion = 23730.452346 eV Total energy + Delta-G solvation = -3580.511221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.96803 -39.26307 -38.64356 -35.78388 -35.26478 -34.47240 -32.33483 -31.71992 -30.37791 -28.48034 -27.85617 -26.84705 -25.91799 -23.88199 -23.18563 -22.06742 -21.69007 -21.32761 -20.32274 -18.28108 -17.95093 -17.12547 -17.04073 -16.56712 -16.25444 -16.11805 -15.81572 -15.63770 -15.39402 -15.18402 -14.86779 -14.58502 -14.42865 -14.04959 -13.75750 -13.51070 -13.37651 -13.21390 -12.95171 -12.89048 -12.80580 -12.60646 -12.58378 -12.53676 -12.40229 -12.24364 -12.10741 -12.10132 -12.03530 -11.89157 -11.55602 -11.41389 -11.19395 -11.03185 -10.69643 -10.47978 -9.85201 -9.33002 -8.55465 -7.79657 -5.25176 1.42778 1.45964 1.50952 1.85642 2.46884 2.52758 3.02257 3.36116 3.65496 3.87433 3.90511 4.01268 4.07662 4.12636 4.20818 4.25321 4.30475 4.42584 4.49283 4.52673 4.54351 4.66964 4.68222 4.72356 4.74964 4.77086 4.80678 4.85225 4.95700 4.97849 4.98835 5.00998 5.06980 5.10344 5.13064 5.14953 5.29040 5.34030 5.35488 5.43850 5.58876 5.64380 5.72966 5.77618 5.82609 6.05406 6.10245 6.46228 6.80814 7.20839 7.51326 7.95523 8.46352 9.25279 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.003586 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.630595 B = 7805.994223 C = 8986.557245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.010 0.990 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.059 0.941 8 N -0.694 5.694 9 C 0.500 3.500 10 O -0.599 6.599 11 C -0.128 4.128 12 C -0.096 4.096 13 C -0.103 4.103 14 C 0.054 3.946 15 N -0.564 5.564 16 C 0.020 3.980 17 C 0.023 3.977 18 C 0.172 3.828 19 N -0.593 5.593 20 C -0.237 4.237 21 H 0.078 0.922 22 C -0.056 4.056 23 N -0.939 5.939 24 Si 0.951 3.049 25 H -0.278 1.278 26 H -0.306 1.306 27 H -0.271 1.271 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.408 0.592 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.026 0.974 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.065 0.935 48 H 0.080 0.920 49 H 0.026 0.974 50 H 0.048 0.952 51 H -0.010 1.010 52 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 -15.020 -13.513 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.027 0.973 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.077 0.923 8 N -0.345 5.345 9 C 0.288 3.712 10 O -0.481 6.481 11 C -0.168 4.168 12 C -0.135 4.135 13 C -0.141 4.141 14 C -0.074 4.074 15 N -0.288 5.288 16 C -0.128 4.128 17 C -0.126 4.126 18 C 0.045 3.955 19 N -0.317 5.317 20 C -0.367 4.367 21 H 0.096 0.904 22 C -0.250 4.250 23 N -0.586 5.586 24 Si 0.780 3.220 25 H -0.204 1.204 26 H -0.233 1.233 27 H -0.197 1.197 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.245 0.755 36 H 0.143 0.857 37 H 0.116 0.884 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.052 0.948 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.045 0.955 50 H 0.066 0.934 51 H 0.008 0.992 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.330 -14.834 -12.794 19.591 hybrid contribution 0.556 0.019 1.315 1.427 sum 0.225 -14.814 -11.479 18.743 Atomic orbital electron populations 1.21718 0.94587 1.01481 1.00736 1.20783 0.94239 0.93092 0.87172 0.97260 1.21953 0.94576 1.01200 0.97912 1.21662 0.97372 0.99696 0.96039 1.21408 0.96073 0.83075 0.97360 0.92299 1.45789 1.29823 1.07784 1.51063 1.21381 0.83960 0.88000 0.77819 1.90644 1.28141 1.86322 1.42951 1.21648 1.00777 0.89945 1.04410 1.21184 0.99013 0.94002 0.99254 1.21491 0.99416 0.92146 1.01000 1.22118 0.95795 0.88950 1.00516 1.62005 1.56732 1.02927 1.07163 1.22497 1.00085 1.01173 0.89055 1.22423 0.96995 0.96952 0.96181 1.20845 0.84177 0.95060 0.95465 1.44241 1.02095 1.65515 1.19860 1.19412 0.95150 1.35701 0.86452 0.90407 1.25755 0.98858 1.01411 0.99004 1.70171 1.25400 1.46804 1.16259 0.85578 0.78583 0.79430 0.78400 1.20428 1.23296 1.19699 0.94779 0.90644 0.92724 0.91490 0.89274 0.91375 0.89594 0.75546 0.85685 0.88375 0.94247 0.92120 0.91384 0.90006 0.94802 0.91809 0.95561 0.90475 0.90513 0.91639 0.90160 0.95513 0.93400 0.99225 0.94983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.95 71.98 0.57 -3.67 16 2 C 0.15 5.71 3.49 44.98 0.16 5.86 16 3 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 4 C -0.12 -3.23 5.21 30.69 0.16 -3.07 16 5 C -0.11 -3.16 5.59 30.64 0.17 -2.99 16 6 C 0.13 4.87 2.81 45.07 0.13 5.00 16 7 H 0.06 2.42 7.58 -2.38 -0.02 2.40 16 8 N -0.69 -23.64 4.92 -442.15 -2.17 -25.81 16 9 C 0.50 18.39 7.80 87.66 0.68 19.07 16 10 O -0.60 -27.95 15.65 -3.01 -0.05 -28.00 16 11 C -0.13 -3.35 5.70 29.85 0.17 -3.18 16 12 C -0.10 -2.57 4.50 30.60 0.14 -2.43 16 13 C -0.10 -2.14 5.14 30.60 0.16 -1.99 16 14 C 0.05 1.15 4.96 86.30 0.43 1.58 16 15 N -0.56 -10.98 5.02 -948.87 -4.76 -15.75 16 16 C 0.02 0.30 9.32 127.69 1.19 1.49 16 17 C 0.02 0.37 9.57 127.69 1.22 1.59 16 18 C 0.17 8.58 4.89 86.36 0.42 9.00 16 19 N -0.59 -28.29 2.91 -675.22 -1.96 -30.26 16 20 C -0.24 -12.50 8.60 84.04 0.72 -11.78 16 21 H 0.08 3.90 6.21 -2.91 -0.02 3.88 16 22 C -0.06 -3.18 4.96 84.86 0.42 -2.76 16 23 N -0.94 -58.52 11.14 21.65 0.24 -58.28 16 24 Si 0.95 46.34 29.58 68.60 2.03 48.37 16 25 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 27 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 28 H 0.03 1.29 7.62 -2.39 -0.02 1.27 16 29 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.05 1.78 7.44 -2.39 -0.02 1.76 16 31 H 0.07 1.73 6.40 -2.39 -0.02 1.71 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.41 11.49 6.77 -92.71 -0.63 10.87 16 36 H 0.13 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.04 1.30 8.10 -2.39 -0.02 1.28 16 39 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.38 6.55 -2.39 -0.02 1.37 16 42 H 0.03 0.71 8.12 -2.39 -0.02 0.69 16 43 H 0.06 1.49 8.06 -2.39 -0.02 1.47 16 44 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 46 H 0.08 1.08 6.47 -2.39 -0.02 1.06 16 47 H 0.06 1.09 8.12 -2.39 -0.02 1.08 16 48 H 0.08 1.08 8.12 -2.39 -0.02 1.06 16 49 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 50 H 0.05 2.88 6.06 -2.39 -0.01 2.87 16 51 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 52 H 0.24 14.97 8.31 -92.72 -0.77 14.20 16 Total: -1.00 -73.24 396.74 0.31 -72.94 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.24 Total: 25.05 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 6.74 Total: 11.73 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -8.66 Total: -130.09 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.05 Total: -28.00 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -73.24 0.31 -72.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132434340.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.758 kcal (2) G-P(sol) polarization free energy of solvation -73.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds