Wall clock time and date at job start Tue Mar 31 2020 10:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47160 * 2 1 4 4 N 1.46898 * 109.47397 * 180.02562 * 3 2 1 5 5 C 1.47437 * 111.00218 * 69.15483 * 4 3 2 6 6 C 1.54316 * 107.23533 * 123.25912 * 5 4 3 7 7 C 1.55264 * 103.08292 * 22.20482 * 6 5 4 8 8 C 1.47849 * 111.00155 * 189.99919 * 4 3 2 9 9 H 1.08999 * 110.37327 * 332.57485 * 8 4 3 10 10 C 1.50705 * 110.37239 * 94.80270 * 8 4 3 11 11 O 1.21280 * 120.00295 * 358.44700 * 10 8 4 12 12 N 1.34781 * 119.99624 * 178.45159 * 10 8 4 13 13 C 1.46500 * 119.99541 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.46686 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47316 * 64.99498 * 14 13 12 16 16 C 1.53006 * 109.46933 * 184.99942 * 14 13 12 17 17 N 1.46507 * 109.46950 * 304.99058 * 14 13 12 18 18 C 1.36941 * 119.99455 * 119.99924 * 17 14 13 19 19 H 1.08002 * 119.99761 * 29.87181 * 18 17 14 20 20 C 1.38806 * 119.99837 * 209.86110 * 18 17 14 21 21 N 1.31617 * 120.00366 * 39.43953 * 20 18 17 22 22 Si 1.86801 * 120.00160 * 219.43559 * 20 18 17 23 23 H 1.48498 * 109.47187 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.47085 * 300.00555 * 22 20 18 25 25 H 1.48500 * 109.47051 * 60.00193 * 22 20 18 26 26 C 1.46500 * 120.00337 * 300.00771 * 17 14 13 27 27 C 1.52998 * 109.46639 * 267.67800 * 26 17 14 28 28 H 1.09005 * 109.47061 * 60.00467 * 1 2 3 29 29 H 1.09006 * 109.46657 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47526 * 300.00346 * 1 2 3 31 31 H 1.08998 * 109.47526 * 239.99654 * 2 1 3 32 32 H 1.09005 * 109.47061 * 119.99532 * 2 1 3 33 33 H 1.08998 * 109.47184 * 59.99444 * 3 2 1 34 34 H 1.09005 * 109.46752 * 299.99722 * 3 2 1 35 35 H 1.09000 * 109.88611 * 242.66716 * 5 4 3 36 36 H 1.09000 * 109.88997 * 3.84982 * 5 4 3 37 37 H 1.09006 * 110.70515 * 140.66573 * 6 5 4 38 38 H 1.08996 * 110.70660 * 263.89771 * 6 5 4 39 39 H 1.09001 * 111.08495 * 206.38027 * 7 6 5 40 40 H 1.09003 * 110.94461 * 82.53393 * 7 6 5 41 41 H 0.96992 * 120.00133 * 359.97438 * 12 10 8 42 42 H 1.08992 * 109.47465 * 59.99383 * 13 12 10 43 43 H 1.09003 * 109.46562 * 299.98906 * 13 12 10 44 44 H 1.08996 * 109.47036 * 59.99371 * 16 14 13 45 45 H 1.08999 * 109.47024 * 179.97438 * 16 14 13 46 46 H 1.08999 * 109.46736 * 299.99477 * 16 14 13 47 47 H 0.97008 * 119.99612 * 5.84700 * 21 20 18 48 48 H 1.08995 * 109.46783 * 27.67754 * 26 17 14 49 49 H 1.09004 * 109.46906 * 147.67949 * 26 17 14 50 50 H 1.09004 * 109.47277 * 299.99564 * 27 26 17 51 51 H 1.08999 * 109.47381 * 59.99918 * 27 26 17 52 52 H 1.09007 * 109.46974 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0369 0.9529 -1.2872 6 6 4.9551 2.0560 -1.8542 7 6 5.3441 2.8726 -0.5922 8 6 4.0389 2.8018 0.2390 9 1 3.3280 3.5526 -0.1061 10 6 4.3380 2.9978 1.7030 11 8 4.1078 2.1072 2.4935 12 7 4.8612 4.1628 2.1339 13 6 5.1524 4.3530 3.5570 14 6 5.7354 5.7506 3.7757 15 1 4.9827 6.5004 3.5326 16 6 6.1550 5.9048 5.2390 17 7 6.9039 5.9331 2.9110 18 6 6.9155 6.9361 1.9786 19 1 6.3641 7.8471 2.1587 20 6 7.6362 6.7818 0.8024 21 7 7.6509 5.6183 0.1873 22 14 8.5851 8.2256 0.0921 23 1 9.2647 7.8039 -1.1590 24 1 7.6460 9.3368 -0.2055 25 1 9.5984 8.6841 1.0761 26 6 8.0596 5.0427 3.0435 27 6 9.0674 5.6568 4.0171 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9562 -0.8901 35 1 4.6093 0.0388 -1.1294 36 1 3.2148 0.7637 -1.9775 37 1 5.8392 1.6201 -2.3196 38 1 4.4134 2.6813 -2.5639 39 1 5.5866 3.9032 -0.8513 40 1 6.1709 2.4000 -0.0619 41 1 5.0456 4.8749 1.5017 42 1 5.8734 3.6037 3.8837 43 1 4.2330 4.2483 4.1331 44 1 6.9077 5.1549 5.4821 45 1 6.5708 6.9003 5.3948 46 1 5.2858 5.7690 5.8825 47 1 7.0918 4.8932 0.5077 48 1 7.7311 4.0751 3.4228 49 1 8.5299 4.9104 2.0691 50 1 9.3959 6.6244 3.6377 51 1 8.5971 5.7892 4.9915 52 1 9.9276 4.9945 4.1154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153728337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:33 Heat of formation + Delta-G solvation = -25.137849 kcal Electronic energy + Delta-G solvation = -28189.785062 eV Core-core repulsion = 24610.359739 eV Total energy + Delta-G solvation = -3579.425323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.85188 -38.08117 -36.87288 -34.47158 -33.79580 -32.25430 -30.65812 -30.58160 -29.29683 -28.33693 -25.69558 -25.37496 -23.74324 -22.19503 -21.81078 -21.74225 -20.14275 -19.43146 -19.04034 -17.49685 -16.85349 -16.22972 -15.40813 -15.31541 -15.17777 -14.50078 -14.20672 -14.04446 -13.69510 -13.54467 -13.33733 -12.99160 -12.79762 -12.74099 -12.62505 -12.50618 -12.12544 -11.85728 -11.82723 -11.71782 -11.52365 -11.43189 -11.27543 -10.99880 -10.83685 -10.78085 -10.73731 -10.64611 -10.54163 -10.50665 -10.20163 -10.06685 -9.81014 -9.47670 -9.19387 -8.37070 -8.26783 -8.14304 -6.96159 -6.21814 -3.30113 3.23792 3.44019 3.51788 3.55609 3.67116 4.28133 4.51766 4.73815 4.79943 4.98683 5.03463 5.05760 5.13601 5.31139 5.33088 5.34788 5.43690 5.46100 5.57027 5.62283 5.66597 5.73882 5.80323 5.87385 5.94613 5.98235 6.05482 6.06416 6.11014 6.12113 6.17496 6.27626 6.29771 6.32172 6.35641 6.44757 6.47710 6.52647 6.72370 6.75753 6.85557 7.00681 7.11179 7.18308 7.20297 7.34539 8.04623 8.27249 8.49709 8.90608 9.04012 9.75588 10.24252 11.00419 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.004227 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.989760 B = 6621.948714 C = 7789.279220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.056 3.944 4 N -0.507 5.507 5 C 0.044 3.956 6 C -0.140 4.140 7 C -0.113 4.113 8 C 0.056 3.944 9 H 0.073 0.927 10 C 0.518 3.482 11 O -0.540 6.540 12 N -0.708 5.708 13 C 0.107 3.893 14 C 0.156 3.844 15 H 0.068 0.932 16 C -0.156 4.156 17 N -0.583 5.583 18 C -0.372 4.372 19 H 0.052 0.948 20 C -0.004 4.004 21 N -0.883 5.883 22 Si 1.042 2.958 23 H -0.288 1.288 24 H -0.294 1.294 25 H -0.294 1.294 26 C 0.136 3.864 27 C -0.165 4.165 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.411 0.589 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.273 0.727 48 H 0.027 0.973 49 H 0.071 0.929 50 H 0.052 0.948 51 H 0.043 0.957 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 -6.307 -1.677 10.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.072 4.072 4 N -0.231 5.231 5 C -0.083 4.083 6 C -0.178 4.178 7 C -0.152 4.152 8 C -0.056 4.056 9 H 0.091 0.909 10 C 0.302 3.698 11 O -0.417 6.417 12 N -0.361 5.361 13 C -0.019 4.019 14 C 0.048 3.952 15 H 0.086 0.914 16 C -0.216 4.216 17 N -0.305 5.305 18 C -0.500 4.500 19 H 0.069 0.931 20 C -0.210 4.210 21 N -0.521 5.521 22 Si 0.872 3.128 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.222 1.222 26 C 0.010 3.990 27 C -0.224 4.224 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.248 0.752 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.084 0.916 48 H 0.046 0.954 49 H 0.089 0.911 50 H 0.071 0.929 51 H 0.062 0.938 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.382 -6.810 -1.940 10.229 hybrid contribution -1.133 0.574 0.403 1.333 sum -8.516 -6.236 -1.537 10.666 Atomic orbital electron populations 1.21738 0.95901 1.01518 1.01644 1.21488 0.94978 0.96402 1.02684 1.22283 0.87292 0.97319 1.00353 1.63075 1.07411 1.21102 1.31470 1.22865 0.97791 0.98575 0.89098 1.22800 0.99942 0.97304 0.97798 1.22697 0.95464 1.02419 0.94588 1.22456 0.98112 0.91145 0.93881 0.90922 1.20257 0.77608 0.82139 0.89754 1.90621 1.52917 1.41839 1.56304 1.45911 1.63398 1.16706 1.10103 1.21877 0.98817 0.99863 0.81352 1.20749 0.90427 0.93111 0.90948 0.91366 1.22250 1.00313 1.01864 0.97145 1.43978 1.10619 1.36498 1.39419 1.19730 1.36725 0.94798 0.98743 0.93065 1.25558 1.01020 1.01903 0.92518 1.70845 1.40307 1.05574 1.35349 0.83869 0.77209 0.75821 0.75908 1.21332 1.22058 1.22179 1.20801 0.88088 0.91153 0.98973 1.22359 0.98832 1.01127 1.00109 0.93064 0.92684 0.92672 0.92245 0.90920 0.90977 0.95142 0.90531 0.92729 0.90393 0.91480 0.88637 0.90169 0.75173 0.92636 0.93070 0.92864 0.92438 0.93792 0.91627 0.95414 0.91149 0.92891 0.93775 0.94905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.12 -1.35 5.95 -26.73 -0.16 -1.51 16 3 C 0.06 0.74 4.53 -3.83 -0.02 0.72 16 4 N -0.51 -7.74 4.34 -224.76 -0.98 -8.72 16 5 C 0.04 0.57 6.20 -2.84 -0.02 0.55 16 6 C -0.14 -1.82 6.94 -24.84 -0.17 -2.00 16 7 C -0.11 -1.83 6.44 -24.53 -0.16 -1.99 16 8 C 0.06 0.91 2.80 -67.34 -0.19 0.72 16 9 H 0.07 1.11 7.81 -51.93 -0.41 0.71 16 10 C 0.52 10.02 7.20 -10.98 -0.08 9.94 16 11 O -0.54 -11.99 16.49 5.56 0.09 -11.90 16 12 N -0.71 -13.65 5.35 -60.29 -0.32 -13.97 16 13 C 0.11 2.02 4.93 -4.04 -0.02 2.00 16 14 C 0.16 2.98 2.87 -67.92 -0.20 2.78 16 15 H 0.07 1.34 7.89 -51.93 -0.41 0.93 16 16 C -0.16 -2.61 8.18 37.16 0.30 -2.30 16 17 N -0.58 -12.84 1.73 -165.66 -0.29 -13.13 16 18 C -0.37 -9.19 8.93 -15.06 -0.13 -9.33 16 19 H 0.05 1.32 8.05 -52.49 -0.42 0.90 16 20 C 0.00 -0.10 4.53 -17.43 -0.08 -0.18 16 21 N -0.88 -22.84 12.20 55.49 0.68 -22.16 16 22 Si 1.04 23.38 30.05 -169.99 -5.11 18.27 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 26 C 0.14 2.97 5.19 -4.04 -0.02 2.95 16 27 C -0.16 -3.25 9.99 37.16 0.37 -2.88 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.64 7.09 -51.93 -0.37 0.27 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.03 0.37 7.98 -51.93 -0.41 -0.05 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.61 6.88 -51.93 -0.36 0.25 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.69 7.60 -51.93 -0.39 1.29 16 40 H 0.08 1.45 8.05 -51.93 -0.42 1.03 16 41 H 0.41 8.37 7.42 -40.82 -0.30 8.07 16 42 H 0.06 1.12 6.87 -51.93 -0.36 0.77 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.89 6.35 -51.93 -0.33 0.56 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.27 6.83 7.00 -40.82 -0.29 6.55 16 48 H 0.03 0.59 6.53 -51.93 -0.34 0.25 16 49 H 0.07 1.75 5.64 -51.93 -0.29 1.46 16 50 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 51 H 0.04 0.80 5.70 -51.93 -0.30 0.51 16 52 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 398.70 15.07 6.01 6.01 Total: -1.00 -27.37 398.70 -9.80 -37.17 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -9.68 Total: 10.00 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.20 Total: -1.56 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.91 Total: -57.98 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.11 Total: 18.27 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -27.37 -9.80 -37.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153728337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.030 kcal (2) G-P(sol) polarization free energy of solvation -27.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds