Wall clock time and date at job start Tue Mar 31 2020 10:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47160 * 2 1 4 4 N 1.46898 * 109.47397 * 180.02562 * 3 2 1 5 5 C 1.47437 * 111.00218 * 69.15483 * 4 3 2 6 6 C 1.54316 * 107.23533 * 123.25912 * 5 4 3 7 7 C 1.55264 * 103.08292 * 22.20482 * 6 5 4 8 8 C 1.47849 * 111.00155 * 189.99919 * 4 3 2 9 9 H 1.08999 * 110.37327 * 332.57485 * 8 4 3 10 10 C 1.50705 * 110.37239 * 94.80270 * 8 4 3 11 11 O 1.21280 * 120.00295 * 358.44700 * 10 8 4 12 12 N 1.34781 * 119.99624 * 178.45159 * 10 8 4 13 13 C 1.46500 * 119.99541 * 180.02562 * 12 10 8 14 14 C 1.53000 * 109.46686 * 179.97438 * 13 12 10 15 15 H 1.08997 * 109.47316 * 64.99498 * 14 13 12 16 16 C 1.53006 * 109.46933 * 184.99942 * 14 13 12 17 17 N 1.46507 * 109.46950 * 304.99058 * 14 13 12 18 18 C 1.36941 * 119.99455 * 119.99924 * 17 14 13 19 19 H 1.08002 * 119.99761 * 29.87181 * 18 17 14 20 20 C 1.38806 * 119.99837 * 209.86110 * 18 17 14 21 21 N 1.31617 * 120.00366 * 39.43953 * 20 18 17 22 22 Si 1.86801 * 120.00160 * 219.43559 * 20 18 17 23 23 H 1.48498 * 109.47187 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.47085 * 300.00555 * 22 20 18 25 25 H 1.48500 * 109.47051 * 60.00193 * 22 20 18 26 26 C 1.46500 * 120.00337 * 300.00771 * 17 14 13 27 27 C 1.52998 * 109.46639 * 267.67800 * 26 17 14 28 28 H 1.09005 * 109.47061 * 60.00467 * 1 2 3 29 29 H 1.09006 * 109.46657 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47526 * 300.00346 * 1 2 3 31 31 H 1.08998 * 109.47526 * 239.99654 * 2 1 3 32 32 H 1.09005 * 109.47061 * 119.99532 * 2 1 3 33 33 H 1.08998 * 109.47184 * 59.99444 * 3 2 1 34 34 H 1.09005 * 109.46752 * 299.99722 * 3 2 1 35 35 H 1.09000 * 109.88611 * 242.66716 * 5 4 3 36 36 H 1.09000 * 109.88997 * 3.84982 * 5 4 3 37 37 H 1.09006 * 110.70515 * 140.66573 * 6 5 4 38 38 H 1.08996 * 110.70660 * 263.89771 * 6 5 4 39 39 H 1.09001 * 111.08495 * 206.38027 * 7 6 5 40 40 H 1.09003 * 110.94461 * 82.53393 * 7 6 5 41 41 H 0.96992 * 120.00133 * 359.97438 * 12 10 8 42 42 H 1.08992 * 109.47465 * 59.99383 * 13 12 10 43 43 H 1.09003 * 109.46562 * 299.98906 * 13 12 10 44 44 H 1.08996 * 109.47036 * 59.99371 * 16 14 13 45 45 H 1.08999 * 109.47024 * 179.97438 * 16 14 13 46 46 H 1.08999 * 109.46736 * 299.99477 * 16 14 13 47 47 H 0.97008 * 119.99612 * 5.84700 * 21 20 18 48 48 H 1.08995 * 109.46783 * 27.67754 * 26 17 14 49 49 H 1.09004 * 109.46906 * 147.67949 * 26 17 14 50 50 H 1.09004 * 109.47277 * 299.99564 * 27 26 17 51 51 H 1.08999 * 109.47381 * 59.99918 * 27 26 17 52 52 H 1.09007 * 109.46974 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0369 0.9529 -1.2872 6 6 4.9551 2.0560 -1.8542 7 6 5.3441 2.8726 -0.5922 8 6 4.0389 2.8018 0.2390 9 1 3.3280 3.5526 -0.1061 10 6 4.3380 2.9978 1.7030 11 8 4.1078 2.1072 2.4935 12 7 4.8612 4.1628 2.1339 13 6 5.1524 4.3530 3.5570 14 6 5.7354 5.7506 3.7757 15 1 4.9827 6.5004 3.5326 16 6 6.1550 5.9048 5.2390 17 7 6.9039 5.9331 2.9110 18 6 6.9155 6.9361 1.9786 19 1 6.3641 7.8471 2.1587 20 6 7.6362 6.7818 0.8024 21 7 7.6509 5.6183 0.1873 22 14 8.5851 8.2256 0.0921 23 1 9.2647 7.8039 -1.1590 24 1 7.6460 9.3368 -0.2055 25 1 9.5984 8.6841 1.0761 26 6 8.0596 5.0427 3.0435 27 6 9.0674 5.6568 4.0171 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9562 -0.8901 35 1 4.6093 0.0388 -1.1294 36 1 3.2148 0.7637 -1.9775 37 1 5.8392 1.6201 -2.3196 38 1 4.4134 2.6813 -2.5639 39 1 5.5866 3.9032 -0.8513 40 1 6.1709 2.4000 -0.0619 41 1 5.0456 4.8749 1.5017 42 1 5.8734 3.6037 3.8837 43 1 4.2330 4.2483 4.1331 44 1 6.9077 5.1549 5.4821 45 1 6.5708 6.9003 5.3948 46 1 5.2858 5.7690 5.8825 47 1 7.0918 4.8932 0.5077 48 1 7.7311 4.0751 3.4228 49 1 8.5299 4.9104 2.0691 50 1 9.3959 6.6244 3.6377 51 1 8.5971 5.7892 4.9915 52 1 9.9276 4.9945 4.1154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153728337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:32 Heat of formation + Delta-G solvation = -40.262384 kcal Electronic energy + Delta-G solvation = -28190.440911 eV Core-core repulsion = 24610.359739 eV Total energy + Delta-G solvation = -3580.081172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.24182 -39.49830 -38.50557 -35.57214 -35.39366 -33.96366 -32.29708 -31.66509 -30.58212 -30.04417 -27.12661 -26.40361 -25.57756 -23.54126 -23.32890 -22.90207 -21.20744 -21.03243 -20.58638 -19.30813 -18.25799 -17.48939 -17.07014 -16.76303 -16.43245 -15.80513 -15.64532 -15.49414 -15.42666 -14.97865 -14.76531 -14.34600 -14.15157 -14.01437 -13.77782 -13.67718 -13.61736 -13.44615 -13.27376 -13.13912 -12.76008 -12.68584 -12.55752 -12.51166 -12.27820 -12.13586 -12.13458 -11.96857 -11.86648 -11.78343 -11.71738 -11.54634 -11.44017 -11.28080 -10.73713 -10.21146 -9.93279 -9.29916 -8.81607 -8.15164 -5.23232 1.63615 1.68761 1.69390 1.87577 2.17863 2.69321 3.02856 3.18935 3.53252 3.58365 3.63603 3.89699 3.98390 4.03130 4.09025 4.16935 4.17706 4.29337 4.41078 4.46401 4.47775 4.52824 4.55083 4.66947 4.71176 4.73076 4.75990 4.80609 4.84463 4.86043 4.90830 4.98409 4.99918 5.05957 5.08492 5.16293 5.23009 5.23639 5.30917 5.35156 5.38649 5.40000 5.60641 5.61777 5.86523 6.08674 6.12959 6.54281 6.68980 7.17869 7.34216 7.88963 8.37256 9.05499 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.004227 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.989760 B = 6621.948714 C = 7789.279220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.056 3.944 4 N -0.528 5.528 5 C 0.047 3.953 6 C -0.131 4.131 7 C -0.108 4.108 8 C 0.062 3.938 9 H 0.085 0.915 10 C 0.514 3.486 11 O -0.572 6.572 12 N -0.708 5.708 13 C 0.113 3.887 14 C 0.156 3.844 15 H 0.062 0.938 16 C -0.147 4.147 17 N -0.589 5.589 18 C -0.373 4.373 19 H 0.039 0.961 20 C -0.039 4.039 21 N -0.902 5.902 22 Si 1.082 2.918 23 H -0.296 1.296 24 H -0.282 1.282 25 H -0.294 1.294 26 C 0.141 3.859 27 C -0.155 4.155 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.052 0.948 41 H 0.406 0.594 42 H 0.041 0.959 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.270 0.730 48 H 0.028 0.972 49 H 0.039 0.961 50 H 0.034 0.966 51 H 0.059 0.941 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.280 -6.472 -2.089 11.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.072 4.072 4 N -0.252 5.252 5 C -0.080 4.080 6 C -0.169 4.169 7 C -0.147 4.147 8 C -0.050 4.050 9 H 0.102 0.898 10 C 0.300 3.700 11 O -0.451 6.451 12 N -0.360 5.360 13 C -0.013 4.013 14 C 0.049 3.951 15 H 0.081 0.919 16 C -0.206 4.206 17 N -0.311 5.311 18 C -0.502 4.502 19 H 0.057 0.943 20 C -0.242 4.242 21 N -0.541 5.541 22 Si 0.910 3.090 23 H -0.222 1.222 24 H -0.208 1.208 25 H -0.221 1.221 26 C 0.015 3.985 27 C -0.214 4.214 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.243 0.757 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.047 0.953 49 H 0.057 0.943 50 H 0.053 0.947 51 H 0.078 0.922 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.279 -6.969 -2.336 11.071 hybrid contribution -0.877 0.598 0.580 1.209 sum -9.155 -6.371 -1.757 11.291 Atomic orbital electron populations 1.21707 0.94211 1.02472 1.01962 1.21445 0.96381 0.94963 1.02213 1.22327 0.86133 0.98539 1.00191 1.63031 1.08754 1.20207 1.33228 1.22904 0.98474 0.98179 0.88449 1.22790 1.00619 0.97032 0.96430 1.22536 0.94511 1.01598 0.96067 1.22364 0.98486 0.92488 0.91623 0.89750 1.20841 0.76683 0.81451 0.90982 1.90593 1.54359 1.42682 1.57470 1.45976 1.63148 1.16643 1.10189 1.21821 0.98886 0.99183 0.81400 1.20848 0.89356 0.92872 0.92021 0.91925 1.22127 1.01427 1.01592 0.95430 1.44023 1.11639 1.36048 1.39426 1.19732 1.36558 0.94915 0.98991 0.94318 1.26343 1.01736 1.02983 0.93106 1.70881 1.41123 1.06052 1.36020 0.83288 0.76408 0.74333 0.74960 1.22212 1.20814 1.22088 1.20674 0.88461 0.91454 0.97896 1.22234 0.98931 1.00247 0.99991 0.91862 0.91436 0.93241 0.91037 0.93021 0.92937 0.93377 0.90562 0.90209 0.89393 0.89857 0.90445 0.92872 0.75749 0.94021 0.91926 0.92860 0.92773 0.91114 0.91920 0.95325 0.94305 0.94679 0.92171 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.91 71.98 0.71 -1.75 16 2 C -0.11 -2.41 5.95 30.59 0.18 -2.22 16 3 C 0.06 1.42 4.53 86.30 0.39 1.81 16 4 N -0.53 -15.74 4.34 -865.01 -3.76 -19.49 16 5 C 0.05 1.12 6.20 86.65 0.54 1.66 16 6 C -0.13 -3.21 6.94 31.82 0.22 -2.99 16 7 C -0.11 -3.55 6.44 32.02 0.21 -3.35 16 8 C 0.06 2.04 2.80 44.64 0.12 2.16 16 9 H 0.08 2.55 7.81 -2.39 -0.02 2.53 16 10 C 0.51 20.30 7.20 87.66 0.63 20.93 16 11 O -0.57 -25.89 16.49 -3.03 -0.05 -25.94 16 12 N -0.71 -27.84 5.35 -463.05 -2.48 -30.31 16 13 C 0.11 4.28 4.93 86.38 0.43 4.70 16 14 C 0.16 5.90 2.87 44.99 0.13 6.03 16 15 H 0.06 2.44 7.89 -2.39 -0.02 2.42 16 16 C -0.15 -4.64 8.18 71.98 0.59 -4.05 16 17 N -0.59 -26.03 1.73 -678.02 -1.17 -27.20 16 18 C -0.37 -18.56 8.93 84.03 0.75 -17.81 16 19 H 0.04 2.01 8.05 -2.91 -0.02 1.99 16 20 C -0.04 -1.96 4.53 84.86 0.38 -1.58 16 21 N -0.90 -47.50 12.20 21.65 0.26 -47.24 16 22 Si 1.08 47.51 30.05 68.60 2.06 49.57 16 23 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 26 C 0.14 6.21 5.19 86.38 0.45 6.66 16 27 C -0.15 -5.96 9.99 71.98 0.72 -5.24 16 28 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 29 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.36 7.09 -2.39 -0.02 1.34 16 32 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.05 1.52 8.08 -2.39 -0.02 1.50 16 34 H 0.05 1.05 7.98 -2.38 -0.02 1.03 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 1.52 6.88 -2.39 -0.02 1.50 16 37 H 0.09 1.99 8.14 -2.38 -0.02 1.98 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.08 2.81 7.60 -2.39 -0.02 2.79 16 40 H 0.05 2.00 8.05 -2.39 -0.02 1.98 16 41 H 0.41 16.96 7.42 -92.71 -0.69 16.28 16 42 H 0.04 1.69 6.87 -2.39 -0.02 1.68 16 43 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.05 1.68 6.35 -2.39 -0.02 1.67 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.27 13.94 7.00 -92.70 -0.65 13.29 16 48 H 0.03 1.23 6.53 -2.39 -0.02 1.22 16 49 H 0.04 1.97 5.64 -2.39 -0.01 1.96 16 50 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.06 2.10 5.70 -2.39 -0.01 2.09 16 52 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -59.18 398.70 1.63 -57.55 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: 0.31 Total: 38.09 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 6.45 Total: 4.96 kcal Atomic # 7 Polarization: -117.10 SS G_CDS: -7.14 Total: -124.24 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.05 Total: -25.94 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.06 Total: 49.57 kcal Total: -59.18 1.63 -57.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153728337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.292 kcal (2) G-P(sol) polarization free energy of solvation -59.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds