Wall clock time and date at job start Tue Mar 31 2020 09:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47101 * 2 1 4 4 C 1.46907 * 110.99980 * 296.53854 * 3 2 1 5 5 C 1.50703 * 109.46531 * 296.13602 * 4 3 2 6 6 O 1.20822 * 120.00349 * 4.25689 * 5 4 3 7 7 O 1.34235 * 119.99591 * 184.25198 * 5 4 3 8 8 C 1.45196 * 116.99573 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47016 * 60.00634 * 8 7 5 10 10 C 1.53003 * 109.46928 * 179.97438 * 8 7 5 11 11 C 1.52995 * 109.47439 * 300.00127 * 8 7 5 12 12 C 1.46902 * 111.00208 * 172.58206 * 3 2 1 13 13 C 1.52998 * 109.46935 * 179.97438 * 12 3 2 14 14 C 1.53005 * 109.46903 * 179.97438 * 13 12 3 15 15 C 1.52998 * 109.47207 * 299.99971 * 14 13 12 16 16 C 1.50704 * 109.47061 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99984 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99784 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99761 * 179.72685 * 18 16 15 20 20 Si 1.86796 * 120.00357 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47259 * 90.00065 * 20 18 16 22 22 H 1.48494 * 109.47425 * 210.00397 * 20 18 16 23 23 H 1.48505 * 109.47210 * 330.00379 * 20 18 16 24 24 C 1.53006 * 109.46743 * 60.00228 * 15 14 13 25 25 C 1.52997 * 109.46844 * 299.99440 * 24 15 14 26 26 H 1.08999 * 109.47678 * 296.59544 * 1 2 3 27 27 H 1.08999 * 109.46691 * 56.59678 * 1 2 3 28 28 H 1.09006 * 109.47351 * 176.59186 * 1 2 3 29 29 H 1.08998 * 109.47621 * 239.99531 * 2 1 3 30 30 H 1.09001 * 109.46487 * 119.99195 * 2 1 3 31 31 H 1.09000 * 109.47173 * 56.13171 * 4 3 2 32 32 H 1.08999 * 109.46961 * 176.13518 * 4 3 2 33 33 H 1.08999 * 109.47579 * 59.99407 * 9 8 7 34 34 H 1.09003 * 109.47015 * 179.97438 * 9 8 7 35 35 H 1.09004 * 109.47327 * 299.99259 * 9 8 7 36 36 H 1.09002 * 109.47026 * 60.00087 * 10 8 7 37 37 H 1.09003 * 109.47262 * 180.02562 * 10 8 7 38 38 H 1.08999 * 109.47097 * 300.00244 * 10 8 7 39 39 H 1.09002 * 109.47163 * 60.00122 * 11 8 7 40 40 H 1.09003 * 109.47106 * 180.02562 * 11 8 7 41 41 H 1.09002 * 109.46906 * 300.00153 * 11 8 7 42 42 H 1.09003 * 109.46723 * 59.99883 * 12 3 2 43 43 H 1.09003 * 109.47289 * 60.00501 * 13 12 3 44 44 H 1.08999 * 109.47200 * 300.00084 * 13 12 3 45 45 H 1.09001 * 109.47314 * 179.97438 * 14 13 12 46 46 H 1.09003 * 109.46695 * 60.00192 * 14 13 12 47 47 H 1.08994 * 109.47204 * 300.00284 * 15 14 13 48 48 H 0.96998 * 119.99815 * 179.97438 * 19 18 16 49 49 H 1.08994 * 109.47225 * 60.00068 * 24 15 14 50 50 H 1.08999 * 109.46777 * 179.97438 * 24 15 14 51 51 H 1.08994 * 109.47723 * 300.00323 * 25 24 15 52 52 H 1.09001 * 109.47074 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6174 2.0856 -1.2270 5 6 2.2666 1.4272 -2.4170 6 8 2.9276 0.4268 -2.2681 7 8 2.1102 1.9521 -3.6426 8 6 2.7644 1.2654 -4.7420 9 6 2.2334 -0.1663 -4.8373 10 6 2.4740 2.0045 -6.0499 11 6 4.2744 1.2342 -4.4977 12 6 3.4773 1.4280 0.1771 13 6 3.9489 2.8835 0.1711 14 6 5.4671 2.9284 0.3562 15 6 5.8377 2.2776 1.6903 16 6 7.3331 2.3213 1.8723 17 1 7.9567 2.7681 1.1122 18 6 7.9050 1.7898 3.0087 19 7 9.2105 1.8231 3.1650 20 14 6.8265 1.0163 4.3231 21 1 6.6539 -0.4300 4.0339 22 1 7.4690 1.1823 5.6515 23 1 5.4989 1.6818 4.3288 24 6 5.3660 0.8221 1.6962 25 6 3.8479 0.7772 1.5112 26 1 -0.3634 0.4601 0.9189 27 1 -0.3633 0.5658 -0.8579 28 1 -0.3634 -1.0259 -0.0611 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 0.5335 2.0398 -1.3328 32 1 1.9333 3.1272 -1.1708 33 1 1.1576 -0.1441 -5.0113 34 1 2.7242 -0.6816 -5.6630 35 1 2.4399 -0.6932 -3.9057 36 1 2.8519 3.0247 -5.9823 37 1 2.9647 1.4888 -6.8753 38 1 1.3982 2.0263 -6.2237 39 1 4.4809 0.7074 -3.5660 40 1 4.7655 0.7192 -5.3233 41 1 4.6526 2.2543 -4.4299 42 1 3.9584 0.8872 -0.6379 43 1 3.4679 3.4247 0.9859 44 1 3.6845 3.3473 -0.7792 45 1 5.8032 3.9652 0.3515 46 1 5.9485 2.3871 -0.4583 47 1 5.3563 2.8188 2.5047 48 1 9.6129 1.4496 3.9646 49 1 5.8475 0.2808 0.8818 50 1 5.6305 0.3583 2.6465 51 1 3.3665 1.3185 2.3256 52 1 3.5118 -0.2596 1.5158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337630.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:22 Heat of formation + Delta-G solvation = -88.828421 kcal Electronic energy + Delta-G solvation = -28599.690975 eV Core-core repulsion = 24985.211070 eV Total energy + Delta-G solvation = -3614.479905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.23071 -39.08585 -37.11801 -35.67131 -34.23264 -32.57349 -31.16493 -30.26721 -29.31526 -27.63507 -27.55153 -26.95769 -24.09251 -23.12078 -21.55706 -21.45513 -20.16661 -19.58266 -18.99169 -17.20673 -16.76085 -16.60099 -16.39288 -15.73642 -15.10013 -14.87723 -14.64046 -14.41296 -13.82050 -13.67746 -13.63484 -13.24730 -13.07939 -12.71549 -12.66946 -12.49491 -12.36589 -12.22953 -12.15267 -12.09857 -11.78289 -11.67936 -11.46397 -11.43742 -11.40620 -11.16420 -10.83546 -10.68469 -10.60246 -10.42844 -10.37457 -10.22935 -9.93055 -9.73031 -9.44214 -8.93381 -8.83019 -8.44719 -8.14626 -6.01083 -3.99240 2.14918 2.61568 3.32338 3.42843 3.45891 3.83669 4.47322 4.50428 4.55359 4.60807 4.72239 4.91246 4.97499 5.23538 5.24593 5.25193 5.32236 5.34281 5.42152 5.45411 5.48247 5.50068 5.54705 5.63968 5.66161 5.76862 5.81607 5.84432 5.95630 6.01159 6.03940 6.13665 6.13816 6.17195 6.22511 6.23193 6.32854 6.35114 6.53747 6.60515 6.74571 6.77527 6.97403 7.04724 7.08814 7.22549 7.36312 7.65662 7.78948 7.85914 8.60020 9.03482 9.62430 11.12474 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.004084 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.412165 B = 6854.722705 C = 7806.827195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.024 3.976 3 N -0.505 5.505 4 C 0.052 3.948 5 C 0.432 3.568 6 O -0.495 6.495 7 O -0.356 6.356 8 C 0.116 3.884 9 C -0.181 4.181 10 C -0.140 4.140 11 C -0.183 4.183 12 C 0.072 3.928 13 C -0.114 4.114 14 C -0.095 4.095 15 C 0.015 3.985 16 C -0.511 4.511 17 H 0.072 0.928 18 C 0.068 3.932 19 N -0.905 5.905 20 Si 0.887 3.113 21 H -0.280 1.280 22 H -0.300 1.300 23 H -0.264 1.264 24 C -0.117 4.117 25 C -0.110 4.110 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.045 0.955 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.027 0.973 48 H 0.262 0.738 49 H 0.057 0.943 50 H 0.046 0.954 51 H 0.061 0.939 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.257 -1.625 -15.081 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 N -0.228 5.228 4 C -0.078 4.078 5 C 0.274 3.726 6 O -0.384 6.384 7 O -0.273 6.273 8 C 0.079 3.921 9 C -0.238 4.238 10 C -0.197 4.197 11 C -0.240 4.240 12 C -0.035 4.035 13 C -0.152 4.152 14 C -0.133 4.133 15 C -0.004 4.004 16 C -0.549 4.549 17 H 0.090 0.910 18 C -0.133 4.133 19 N -0.543 5.543 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.227 1.227 23 H -0.189 1.189 24 C -0.155 4.155 25 C -0.147 4.147 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.045 0.955 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.065 0.935 51 H 0.080 0.920 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.114 -1.744 -14.555 24.088 hybrid contribution 0.045 -1.062 0.000 1.063 sum -19.069 -2.806 -14.555 24.153 Atomic orbital electron populations 1.21846 0.95535 1.01269 1.01999 1.22455 0.95083 0.89527 1.03231 1.62637 1.14681 1.16017 1.29420 1.22356 1.01502 1.00594 0.83370 1.25550 0.78791 0.83389 0.84828 1.90520 1.37526 1.25064 1.85244 1.86593 1.68871 1.55310 1.16533 1.22144 0.92685 0.92188 0.85047 1.22468 1.01143 0.95726 1.04451 1.21847 1.02681 1.01060 0.94127 1.22483 0.93718 1.03260 1.04569 1.21995 0.84819 0.97616 0.99063 1.21736 0.98199 0.94797 1.00418 1.21399 0.92093 1.00497 0.99353 1.19142 0.96740 0.91049 0.93450 1.21104 0.89985 1.38462 1.05340 0.91037 1.25031 0.94739 0.95605 0.97954 1.69912 1.09761 1.46554 1.28123 0.86836 0.81079 0.79682 0.80593 1.20740 1.22738 1.18874 1.21942 0.92281 1.00801 1.00457 1.21661 0.98068 0.98938 0.96078 0.91942 0.93214 0.92520 0.91925 0.89991 0.86792 0.86325 0.92296 0.91239 0.89832 0.91442 0.90539 0.91688 0.89603 0.91253 0.91875 0.91106 0.91559 0.93674 0.92576 0.93063 0.95523 0.92812 0.92420 0.93546 0.91989 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.87 37.16 0.37 -1.11 16 2 C 0.02 0.31 5.18 -3.83 -0.02 0.29 16 3 N -0.50 -6.78 4.60 -228.08 -1.05 -7.83 16 4 C 0.05 0.59 5.26 -4.97 -0.03 0.56 16 5 C 0.43 5.48 6.63 36.01 0.24 5.72 16 6 O -0.50 -7.29 7.11 -18.75 -0.13 -7.42 16 7 O -0.36 -4.23 9.89 -39.27 -0.39 -4.62 16 8 C 0.12 1.21 1.13 -90.62 -0.10 1.11 16 9 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 10 C -0.14 -1.11 8.85 37.16 0.33 -0.78 16 11 C -0.18 -2.10 8.37 37.15 0.31 -1.78 16 12 C 0.07 1.17 1.52 -67.71 -0.10 1.07 16 13 C -0.11 -1.88 4.84 -26.73 -0.13 -2.01 16 14 C -0.10 -1.92 5.14 -26.73 -0.14 -2.05 16 15 C 0.01 0.35 1.69 -91.77 -0.16 0.20 16 16 C -0.51 -14.55 9.14 -34.44 -0.31 -14.86 16 17 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 18 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 19 N -0.90 -28.20 13.96 55.43 0.77 -27.43 16 20 Si 0.89 22.48 24.37 -169.99 -4.14 18.34 16 21 H -0.28 -6.95 6.87 56.52 0.39 -6.56 16 22 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 23 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 24 C -0.12 -2.58 4.68 -26.73 -0.13 -2.70 16 25 C -0.11 -1.99 4.99 -26.73 -0.13 -2.13 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.45 6.24 -51.93 -0.32 0.12 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.87 5.49 -51.93 -0.28 0.59 16 30 H 0.08 1.10 5.94 -51.93 -0.31 0.79 16 31 H 0.11 1.03 6.14 -51.93 -0.32 0.72 16 32 H 0.12 1.26 6.23 -51.93 -0.32 0.94 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.01 5.89 -51.93 -0.31 0.71 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 1.21 5.89 -51.93 -0.31 0.90 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.28 5.62 -51.93 -0.29 0.99 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.04 0.66 6.34 -51.93 -0.33 0.33 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 48 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 49 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 50 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 51 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 52 H 0.05 0.85 6.25 -51.93 -0.32 0.52 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -31.09 372.33 -8.30 -39.38 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -9.18 Total: 2.03 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 0.21 Total: -18.07 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.28 Total: -35.26 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.52 Total: -12.04 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.14 Total: 18.34 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.09 -8.30 -39.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337630.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.444 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds