Wall clock time and date at job start Tue Mar 31 2020 09:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46896 * 109.47101 * 2 1 4 4 C 1.46907 * 110.99980 * 296.53854 * 3 2 1 5 5 C 1.50703 * 109.46531 * 296.13602 * 4 3 2 6 6 O 1.20822 * 120.00349 * 4.25689 * 5 4 3 7 7 O 1.34235 * 119.99591 * 184.25198 * 5 4 3 8 8 C 1.45196 * 116.99573 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.47016 * 60.00634 * 8 7 5 10 10 C 1.53003 * 109.46928 * 179.97438 * 8 7 5 11 11 C 1.52995 * 109.47439 * 300.00127 * 8 7 5 12 12 C 1.46902 * 111.00208 * 172.58206 * 3 2 1 13 13 C 1.52998 * 109.46935 * 179.97438 * 12 3 2 14 14 C 1.53005 * 109.46903 * 179.97438 * 13 12 3 15 15 C 1.52998 * 109.47207 * 299.99971 * 14 13 12 16 16 C 1.50704 * 109.47061 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99984 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99784 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99761 * 179.72685 * 18 16 15 20 20 Si 1.86796 * 120.00357 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.47259 * 90.00065 * 20 18 16 22 22 H 1.48494 * 109.47425 * 210.00397 * 20 18 16 23 23 H 1.48505 * 109.47210 * 330.00379 * 20 18 16 24 24 C 1.53006 * 109.46743 * 60.00228 * 15 14 13 25 25 C 1.52997 * 109.46844 * 299.99440 * 24 15 14 26 26 H 1.08999 * 109.47678 * 296.59544 * 1 2 3 27 27 H 1.08999 * 109.46691 * 56.59678 * 1 2 3 28 28 H 1.09006 * 109.47351 * 176.59186 * 1 2 3 29 29 H 1.08998 * 109.47621 * 239.99531 * 2 1 3 30 30 H 1.09001 * 109.46487 * 119.99195 * 2 1 3 31 31 H 1.09000 * 109.47173 * 56.13171 * 4 3 2 32 32 H 1.08999 * 109.46961 * 176.13518 * 4 3 2 33 33 H 1.08999 * 109.47579 * 59.99407 * 9 8 7 34 34 H 1.09003 * 109.47015 * 179.97438 * 9 8 7 35 35 H 1.09004 * 109.47327 * 299.99259 * 9 8 7 36 36 H 1.09002 * 109.47026 * 60.00087 * 10 8 7 37 37 H 1.09003 * 109.47262 * 180.02562 * 10 8 7 38 38 H 1.08999 * 109.47097 * 300.00244 * 10 8 7 39 39 H 1.09002 * 109.47163 * 60.00122 * 11 8 7 40 40 H 1.09003 * 109.47106 * 180.02562 * 11 8 7 41 41 H 1.09002 * 109.46906 * 300.00153 * 11 8 7 42 42 H 1.09003 * 109.46723 * 59.99883 * 12 3 2 43 43 H 1.09003 * 109.47289 * 60.00501 * 13 12 3 44 44 H 1.08999 * 109.47200 * 300.00084 * 13 12 3 45 45 H 1.09001 * 109.47314 * 179.97438 * 14 13 12 46 46 H 1.09003 * 109.46695 * 60.00192 * 14 13 12 47 47 H 1.08994 * 109.47204 * 300.00284 * 15 14 13 48 48 H 0.96998 * 119.99815 * 179.97438 * 19 18 16 49 49 H 1.08994 * 109.47225 * 60.00068 * 24 15 14 50 50 H 1.08999 * 109.46777 * 179.97438 * 24 15 14 51 51 H 1.08994 * 109.47723 * 300.00323 * 25 24 15 52 52 H 1.09001 * 109.47074 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6174 2.0856 -1.2270 5 6 2.2666 1.4272 -2.4170 6 8 2.9276 0.4268 -2.2681 7 8 2.1102 1.9521 -3.6426 8 6 2.7644 1.2654 -4.7420 9 6 2.2334 -0.1663 -4.8373 10 6 2.4740 2.0045 -6.0499 11 6 4.2744 1.2342 -4.4977 12 6 3.4773 1.4280 0.1771 13 6 3.9489 2.8835 0.1711 14 6 5.4671 2.9284 0.3562 15 6 5.8377 2.2776 1.6903 16 6 7.3331 2.3213 1.8723 17 1 7.9567 2.7681 1.1122 18 6 7.9050 1.7898 3.0087 19 7 9.2105 1.8231 3.1650 20 14 6.8265 1.0163 4.3231 21 1 6.6539 -0.4300 4.0339 22 1 7.4690 1.1823 5.6515 23 1 5.4989 1.6818 4.3288 24 6 5.3660 0.8221 1.6962 25 6 3.8479 0.7772 1.5112 26 1 -0.3634 0.4601 0.9189 27 1 -0.3633 0.5658 -0.8579 28 1 -0.3634 -1.0259 -0.0611 29 1 1.8934 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 0.5335 2.0398 -1.3328 32 1 1.9333 3.1272 -1.1708 33 1 1.1576 -0.1441 -5.0113 34 1 2.7242 -0.6816 -5.6630 35 1 2.4399 -0.6932 -3.9057 36 1 2.8519 3.0247 -5.9823 37 1 2.9647 1.4888 -6.8753 38 1 1.3982 2.0263 -6.2237 39 1 4.4809 0.7074 -3.5660 40 1 4.7655 0.7192 -5.3233 41 1 4.6526 2.2543 -4.4299 42 1 3.9584 0.8872 -0.6379 43 1 3.4679 3.4247 0.9859 44 1 3.6845 3.3473 -0.7792 45 1 5.8032 3.9652 0.3515 46 1 5.9485 2.3871 -0.4583 47 1 5.3563 2.8188 2.5047 48 1 9.6129 1.4496 3.9646 49 1 5.8475 0.2808 0.8818 50 1 5.6305 0.3583 2.6465 51 1 3.3665 1.3185 2.3256 52 1 3.5118 -0.2596 1.5158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337630.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:21 Heat of formation + Delta-G solvation = -107.641785 kcal Electronic energy + Delta-G solvation = -28600.506783 eV Core-core repulsion = 24985.211070 eV Total energy + Delta-G solvation = -3615.295713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.225 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.20368 -40.28024 -38.36596 -36.87844 -35.07802 -34.58759 -32.46061 -31.80894 -30.65867 -28.41211 -28.31867 -28.22303 -25.86989 -24.25198 -22.90805 -22.75558 -21.37667 -20.69102 -20.48109 -18.80057 -18.12361 -17.79347 -17.37083 -16.93518 -16.46320 -16.11412 -15.71878 -15.55348 -15.07471 -14.95167 -14.85981 -14.62608 -14.56761 -14.37895 -13.72970 -13.63898 -13.40006 -13.23423 -13.01367 -12.98065 -12.91012 -12.88161 -12.79339 -12.62983 -12.49391 -12.31812 -12.26683 -12.08375 -11.94904 -11.84281 -11.61607 -11.56690 -11.34089 -11.30919 -11.11395 -10.88234 -10.76269 -10.48318 -9.23281 -8.30122 -6.33057 1.20966 1.29649 1.34639 1.46214 1.76223 2.32494 2.75929 3.05620 3.68507 3.74925 3.77882 3.78020 3.90919 3.95216 4.03946 4.29773 4.33660 4.36659 4.47771 4.51131 4.54376 4.56205 4.61156 4.63760 4.68667 4.70580 4.72813 4.79114 4.80269 4.83416 4.86143 4.89752 4.94684 5.01007 5.09592 5.12762 5.18091 5.22827 5.24344 5.28571 5.34220 5.36414 5.43996 5.55153 5.66708 5.70157 5.80056 5.99836 6.03784 6.32830 6.74372 6.85707 7.32424 8.87140 Molecular weight = 311.22amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.004084 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.412165 B = 6854.722705 C = 7806.827195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.024 3.976 3 N -0.500 5.500 4 C 0.050 3.950 5 C 0.430 3.570 6 O -0.519 6.519 7 O -0.358 6.358 8 C 0.108 3.892 9 C -0.176 4.176 10 C -0.136 4.136 11 C -0.181 4.181 12 C 0.080 3.920 13 C -0.103 4.103 14 C -0.091 4.091 15 C 0.015 3.985 16 C -0.519 4.519 17 H 0.029 0.971 18 C 0.009 3.991 19 N -0.953 5.953 20 Si 0.950 3.050 21 H -0.271 1.271 22 H -0.299 1.299 23 H -0.242 1.242 24 C -0.114 4.114 25 C -0.102 4.102 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.130 0.870 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.053 0.947 46 H 0.035 0.965 47 H 0.027 0.973 48 H 0.264 0.736 49 H 0.041 0.959 50 H 0.034 0.966 51 H 0.068 0.932 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.021 -1.587 -15.753 27.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 N -0.223 5.223 4 C -0.079 4.079 5 C 0.273 3.727 6 O -0.408 6.408 7 O -0.274 6.274 8 C 0.072 3.928 9 C -0.233 4.233 10 C -0.192 4.192 11 C -0.239 4.239 12 C -0.027 4.027 13 C -0.141 4.141 14 C -0.129 4.129 15 C -0.004 4.004 16 C -0.557 4.557 17 H 0.047 0.953 18 C -0.187 4.187 19 N -0.594 5.594 20 Si 0.777 3.223 21 H -0.198 1.198 22 H -0.227 1.227 23 H -0.165 1.165 24 C -0.152 4.152 25 C -0.140 4.140 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.148 0.852 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.054 0.946 47 H 0.045 0.955 48 H 0.073 0.927 49 H 0.060 0.940 50 H 0.052 0.948 51 H 0.086 0.914 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.909 -1.693 -15.252 27.573 hybrid contribution 1.318 -1.051 0.081 1.688 sum -21.590 -2.744 -15.171 26.530 Atomic orbital electron populations 1.21786 0.93070 1.02270 1.02706 1.22471 0.97037 0.88769 1.02043 1.62596 1.12159 1.16662 1.30864 1.22547 1.03094 1.00459 0.81817 1.25789 0.78398 0.83065 0.85440 1.90542 1.38505 1.26184 1.85599 1.86585 1.68837 1.55389 1.16600 1.22377 0.91703 0.92961 0.85719 1.22415 1.01955 0.95225 1.03714 1.21859 1.03589 1.00861 0.92936 1.22455 0.95122 1.02655 1.03640 1.21728 0.86955 0.96775 0.97275 1.21617 0.94906 0.95447 1.02084 1.21294 0.95157 0.99602 0.96874 1.19108 0.93293 0.92688 0.95274 1.21467 0.92563 1.37442 1.04207 0.95254 1.25909 0.95979 0.96281 1.00536 1.70065 1.11887 1.48281 1.29191 0.85806 0.80006 0.79241 0.77199 1.19751 1.22673 1.16535 1.21803 0.95328 0.98888 0.99171 1.21559 0.94750 1.00312 0.97398 0.91533 0.92035 0.91536 0.93396 0.90960 0.83860 0.85196 0.91245 0.89779 0.92308 0.91463 0.88814 0.90682 0.92646 0.89691 0.92320 0.93059 0.90556 0.91304 0.92873 0.94622 0.95484 0.92669 0.94006 0.94752 0.91362 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.87 71.98 0.71 -1.61 16 2 C 0.02 0.55 5.18 86.30 0.45 1.00 16 3 N -0.50 -12.11 4.60 -875.51 -4.03 -16.13 16 4 C 0.05 0.98 5.26 85.56 0.45 1.43 16 5 C 0.43 10.19 6.63 71.24 0.47 10.66 16 6 O -0.52 -15.05 7.11 21.98 0.16 -14.90 16 7 O -0.36 -7.79 9.89 -51.46 -0.51 -8.30 16 8 C 0.11 2.09 1.13 -10.79 -0.01 2.08 16 9 C -0.18 -3.23 8.37 71.98 0.60 -2.62 16 10 C -0.14 -1.79 8.85 71.98 0.64 -1.15 16 11 C -0.18 -4.08 8.37 71.98 0.60 -3.47 16 12 C 0.08 2.49 1.52 44.91 0.07 2.56 16 13 C -0.10 -3.20 4.84 30.59 0.15 -3.05 16 14 C -0.09 -3.68 5.14 30.60 0.16 -3.53 16 15 C 0.02 0.72 1.69 -11.54 -0.02 0.70 16 16 C -0.52 -30.67 9.14 25.60 0.23 -30.44 16 17 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 18 C 0.01 0.56 5.45 84.65 0.46 1.02 16 19 N -0.95 -61.59 13.96 21.45 0.30 -61.29 16 20 Si 0.95 46.66 24.37 68.60 1.67 48.33 16 21 H -0.27 -12.83 6.87 99.48 0.68 -12.14 16 22 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 23 H -0.24 -10.91 6.53 99.48 0.65 -10.26 16 24 C -0.11 -4.98 4.68 30.60 0.14 -4.84 16 25 C -0.10 -3.55 4.99 30.59 0.15 -3.40 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 0.87 6.24 -2.39 -0.01 0.85 16 28 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.05 1.28 5.49 -2.39 -0.01 1.26 16 30 H 0.07 1.79 5.94 -2.39 -0.01 1.78 16 31 H 0.14 1.99 6.14 -2.39 -0.01 1.98 16 32 H 0.13 2.28 6.23 -2.39 -0.01 2.26 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 1.40 5.89 -2.38 -0.01 1.38 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 1.60 5.89 -2.39 -0.01 1.59 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.05 1.84 5.62 -2.39 -0.01 1.83 16 43 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.07 1.83 6.34 -2.39 -0.02 1.82 16 45 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 48 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 49 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.03 1.57 3.27 -2.39 -0.01 1.57 16 51 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 52 H 0.06 2.04 6.25 -2.39 -0.01 2.03 16 Total: -1.00 -70.26 372.33 3.65 -66.61 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.81 Total: 20.34 kcal Atomic # 6 Polarization: -39.91 SS G_CDS: 5.26 Total: -34.66 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -3.73 Total: -77.43 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.35 Total: -23.20 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.67 Total: 48.33 kcal Total: -70.26 3.65 -66.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337630.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.033 kcal (2) G-P(sol) polarization free energy of solvation -70.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds