Wall clock time and date at job start Tue Mar 31 2020 10:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46809 * 2 1 4 4 N 1.46896 * 109.46963 * 179.97438 * 3 2 1 5 5 C 1.46898 * 111.00214 * 293.95658 * 4 3 2 6 6 C 1.46903 * 111.00043 * 169.99689 * 4 3 2 7 7 C 1.53001 * 109.47333 * 190.00148 * 6 4 3 8 8 C 1.50700 * 109.47193 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99638 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00068 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00084 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47208 * 179.97438 * 11 10 8 13 13 C 1.53352 * 109.41800 * 295.12674 * 12 11 10 14 14 C 1.53190 * 109.15070 * 178.67720 * 13 12 11 15 15 N 1.46925 * 108.89356 * 54.57285 * 14 13 12 16 16 C 1.36935 * 120.62758 * 126.30089 * 15 14 13 17 17 H 1.08001 * 120.00088 * 332.62829 * 16 15 14 18 18 C 1.38817 * 119.99782 * 152.62208 * 16 15 14 19 19 N 1.31618 * 119.99923 * 159.36242 * 18 16 15 20 20 Si 1.86801 * 120.00195 * 339.36341 * 18 16 15 21 21 H 1.48501 * 109.47054 * 92.89675 * 20 18 16 22 22 H 1.48497 * 109.47324 * 212.90179 * 20 18 16 23 23 H 1.48501 * 109.46722 * 332.89954 * 20 18 16 24 24 C 1.46926 * 118.73822 * 306.31916 * 15 14 13 25 25 C 1.53037 * 109.46053 * 174.99519 * 12 11 10 26 26 H 1.08998 * 109.47465 * 299.99649 * 1 2 3 27 27 H 1.08996 * 109.47279 * 60.00323 * 1 2 3 28 28 H 1.09008 * 109.46879 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47112 * 239.99943 * 2 1 3 30 30 H 1.08999 * 109.46845 * 119.99938 * 2 1 3 31 31 H 1.08997 * 109.47330 * 60.00077 * 3 2 1 32 32 H 1.09006 * 109.46767 * 299.99929 * 3 2 1 33 33 H 1.09001 * 109.46655 * 296.04396 * 5 4 3 34 34 H 1.08992 * 109.47191 * 56.04400 * 5 4 3 35 35 H 1.08995 * 109.47127 * 176.04980 * 5 4 3 36 36 H 1.09005 * 109.47066 * 69.99905 * 6 4 3 37 37 H 1.08997 * 109.47149 * 310.00589 * 6 4 3 38 38 H 1.08996 * 109.47061 * 60.00028 * 7 6 4 39 39 H 1.09008 * 109.46669 * 300.00104 * 7 6 4 40 40 H 0.97004 * 120.00152 * 359.97438 * 10 8 7 41 41 H 1.08996 * 109.47010 * 59.99318 * 11 10 8 42 42 H 1.08996 * 109.46600 * 299.99324 * 11 10 8 43 43 H 1.09008 * 109.45887 * 55.02318 * 12 11 10 44 44 H 1.09004 * 109.68561 * 58.70472 * 13 12 11 45 45 H 1.09004 * 109.47287 * 298.51133 * 13 12 11 46 46 H 1.09004 * 109.58215 * 294.71811 * 14 13 12 47 47 H 1.08997 * 109.58828 * 174.43980 * 14 13 12 48 48 H 0.96999 * 119.99917 * 180.02562 * 19 18 16 49 49 H 1.09002 * 109.58248 * 173.39705 * 24 15 14 50 50 H 1.08994 * 109.58922 * 293.68210 * 24 15 14 51 51 H 1.09003 * 109.49698 * 61.43697 * 25 12 11 52 52 H 1.08994 * 109.52761 * 301.35110 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0349 0.8859 1.2542 6 6 4.0354 2.7932 -0.2376 7 6 5.5446 2.7172 -0.4779 8 6 6.0848 4.1028 -0.7217 9 8 5.3363 5.0570 -0.7052 10 7 7.3993 4.2815 -0.9589 11 6 7.9244 5.6284 -1.1964 12 6 9.4335 5.5525 -1.4366 13 6 10.1288 5.0615 -0.1610 14 6 11.6352 4.9561 -0.4184 15 7 12.1246 6.2495 -0.9148 16 6 13.1743 6.8800 -0.3018 17 1 13.3691 6.7093 0.7467 18 6 13.9882 7.7385 -1.0282 19 7 14.7170 8.6396 -0.4043 20 14 14.0490 7.6150 -2.8911 21 1 13.0600 8.5520 -3.4819 22 1 15.4108 7.9681 -3.3665 23 1 13.7245 6.2265 -3.3059 24 6 11.4661 6.8537 -2.0810 25 6 9.9612 6.9403 -1.8075 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9563 -0.8901 33 1 3.7435 1.5265 2.0866 34 1 3.6292 -0.1142 1.4060 35 1 5.1222 0.8327 1.2001 36 1 3.8371 3.4191 0.6325 37 1 3.5493 3.2235 -1.1131 38 1 5.7428 2.0913 -1.3480 39 1 6.0307 2.2869 0.3977 40 1 7.9979 3.5182 -0.9724 41 1 7.7263 6.2542 -0.3263 42 1 7.4380 6.0587 -2.0718 43 1 9.6371 4.8570 -2.2510 44 1 9.7377 4.0826 0.1168 45 1 9.9465 5.7693 0.6476 46 1 11.8254 4.1833 -1.1632 47 1 12.1477 4.7032 0.5097 48 1 15.2854 9.2397 -0.9119 49 1 11.8652 7.8541 -2.2484 50 1 11.6446 6.2369 -2.9617 51 1 9.7804 7.6305 -0.9834 52 1 9.4492 7.2980 -2.7007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225237511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:41 Heat of formation + Delta-G solvation = -29.937089 kcal Electronic energy + Delta-G solvation = -25916.794811 eV Core-core repulsion = 22337.161377 eV Total energy + Delta-G solvation = -3579.633434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.98541 -38.42605 -37.91929 -35.14266 -34.06048 -32.90666 -31.38475 -30.75373 -30.33954 -27.63719 -27.19692 -25.46672 -23.80223 -22.88239 -22.02058 -21.24609 -21.04907 -20.29890 -19.37197 -17.45126 -16.75781 -16.34113 -16.05356 -15.86048 -15.49001 -15.05303 -14.81735 -14.74519 -14.22910 -14.06136 -13.67366 -13.56368 -13.35125 -13.24792 -13.13253 -12.84358 -12.49193 -12.36524 -12.23789 -12.16144 -12.01851 -11.88157 -11.79060 -11.40834 -11.30658 -11.19486 -10.94189 -10.84772 -10.65031 -10.52217 -10.15106 -10.00263 -9.87059 -9.65196 -9.43081 -9.07358 -8.73421 -8.62736 -6.98386 -5.95480 -3.31162 2.56496 3.01037 3.31316 3.47598 3.50210 3.65034 4.46294 4.52303 4.54765 4.63303 4.72258 4.83235 4.92496 4.93106 4.98913 5.00110 5.06916 5.10124 5.18700 5.21580 5.26677 5.34146 5.35330 5.42447 5.55058 5.59824 5.65056 5.66806 5.68479 5.76361 5.77099 5.87204 5.88089 5.93075 6.04585 6.15991 6.26340 6.37684 6.42195 6.48773 6.61495 6.64203 6.65435 6.66454 6.69259 6.95509 7.43452 7.95983 8.14866 8.32313 8.93869 9.71739 10.09684 11.20560 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.041991 B = 0.001959 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.642336 B =14288.421317 C =14523.026611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.054 3.946 4 N -0.545 5.545 5 C 0.016 3.984 6 C 0.071 3.929 7 C -0.138 4.138 8 C 0.511 3.489 9 O -0.547 6.547 10 N -0.726 5.726 11 C 0.123 3.877 12 C -0.091 4.091 13 C -0.129 4.129 14 C 0.148 3.852 15 N -0.606 5.606 16 C -0.260 4.260 17 H 0.085 0.915 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.884 3.116 21 H -0.288 1.288 22 H -0.303 1.303 23 H -0.271 1.271 24 C 0.126 3.874 25 C -0.126 4.126 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.026 0.974 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.401 0.599 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.021 0.979 47 H 0.062 0.938 48 H 0.262 0.738 49 H 0.073 0.927 50 H 0.024 0.976 51 H 0.068 0.932 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.048 -17.368 -0.070 29.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.073 4.073 4 N -0.269 5.269 5 C -0.132 4.132 6 C -0.057 4.057 7 C -0.178 4.178 8 C 0.297 3.703 9 O -0.425 6.425 10 N -0.377 5.377 11 C 0.000 4.000 12 C -0.110 4.110 13 C -0.168 4.168 14 C 0.022 3.978 15 N -0.330 5.330 16 C -0.389 4.389 17 H 0.102 0.898 18 C -0.176 4.176 19 N -0.551 5.551 20 Si 0.714 3.286 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.196 1.196 24 C 0.001 3.999 25 C -0.166 4.166 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.111 0.889 40 H 0.236 0.764 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.039 0.961 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.091 0.909 50 H 0.042 0.958 51 H 0.086 0.914 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.271 -16.836 -0.431 29.542 hybrid contribution 0.242 0.228 -0.394 0.516 sum -24.029 -16.608 -0.825 29.222 Atomic orbital electron populations 1.21744 0.95609 1.01793 1.01851 1.21549 0.95397 0.96307 1.02675 1.22167 0.86809 0.97315 1.01042 1.61977 1.07818 1.22254 1.34878 1.22513 1.00973 0.99978 0.89748 1.21804 0.93518 0.88447 1.01928 1.21631 0.96934 0.94667 1.04585 1.20607 0.82177 0.91222 0.76282 1.90706 1.57474 1.43122 1.51192 1.46096 1.08534 1.10596 1.72494 1.21530 0.94033 0.83051 1.01389 1.21360 0.91941 0.98920 0.98797 1.22132 0.98043 0.99751 0.96876 1.20908 0.91484 0.87566 0.97834 1.44342 1.35915 1.18887 1.33809 1.18924 1.03838 1.22064 0.94026 0.89775 1.25281 0.97027 0.97677 0.97623 1.69839 1.30486 1.19357 1.35465 0.86939 0.75639 0.78260 0.87742 1.21626 1.23179 1.19647 1.21326 0.90625 0.98093 0.89900 1.21987 0.98209 0.95356 1.01019 0.92867 0.92600 0.92511 0.91098 0.91971 0.94810 0.90676 0.95534 0.91085 0.91101 0.93900 0.89975 0.88048 0.88897 0.76448 0.91477 0.91770 0.91174 0.92964 0.91723 0.96128 0.91941 0.92782 0.90890 0.95779 0.91370 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.12 -0.72 5.87 -26.73 -0.16 -0.88 16 3 C 0.05 0.39 4.96 -3.83 -0.02 0.37 16 4 N -0.55 -4.33 4.76 -242.92 -1.16 -5.49 16 5 C 0.02 0.11 9.13 60.06 0.55 0.66 16 6 C 0.07 0.65 4.25 -3.82 -0.02 0.63 16 7 C -0.14 -1.14 5.62 -27.88 -0.16 -1.30 16 8 C 0.51 5.99 7.83 -10.99 -0.09 5.91 16 9 O -0.55 -8.64 15.98 5.56 0.09 -8.55 16 10 N -0.73 -7.85 5.27 -60.30 -0.32 -8.17 16 11 C 0.12 1.60 5.07 -4.04 -0.02 1.58 16 12 C -0.09 -1.29 2.19 -90.42 -0.20 -1.49 16 13 C -0.13 -1.92 5.27 -26.45 -0.14 -2.06 16 14 C 0.15 2.76 6.50 -3.71 -0.02 2.74 16 15 N -0.61 -14.06 2.77 -172.32 -0.48 -14.54 16 16 C -0.26 -7.22 10.03 -15.06 -0.15 -7.37 16 17 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 18 C 0.02 0.66 5.23 -17.43 -0.09 0.56 16 19 N -0.91 -27.82 13.97 55.49 0.78 -27.04 16 20 Si 0.88 22.29 24.34 -169.99 -4.14 18.15 16 21 H -0.29 -7.02 6.62 56.52 0.37 -6.65 16 22 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 23 H -0.27 -6.70 6.64 56.52 0.38 -6.33 16 24 C 0.13 2.68 4.21 -3.71 -0.02 2.67 16 25 C -0.13 -2.13 5.36 -26.61 -0.14 -2.28 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.36 6.47 -51.93 -0.34 0.02 16 31 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 32 H 0.07 0.54 7.93 -51.93 -0.41 0.13 16 33 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.07 0.42 6.30 -51.93 -0.33 0.09 16 35 H 0.07 0.43 6.47 -51.93 -0.34 0.09 16 36 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 37 H 0.08 0.83 7.89 -51.93 -0.41 0.42 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.64 6.55 -51.92 -0.34 0.30 16 40 H 0.40 3.40 7.65 -40.82 -0.31 3.09 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 44 H 0.05 0.62 7.16 -51.93 -0.37 0.25 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 48 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.07 1.72 4.50 -51.93 -0.23 1.49 16 50 H 0.02 0.51 7.07 -51.93 -0.37 0.14 16 51 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 52 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -32.39 393.23 -9.41 -41.80 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -9.81 Total: -1.44 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -0.30 Total: -0.65 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -1.18 Total: -55.23 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.39 -9.41 -41.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225237511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.861 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds