Wall clock time and date at job start Tue Mar 31 2020 10:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46809 * 2 1 4 4 N 1.46896 * 109.46963 * 179.97438 * 3 2 1 5 5 C 1.46898 * 111.00214 * 293.95658 * 4 3 2 6 6 C 1.46903 * 111.00043 * 169.99689 * 4 3 2 7 7 C 1.53001 * 109.47333 * 190.00148 * 6 4 3 8 8 C 1.50700 * 109.47193 * 180.02562 * 7 6 4 9 9 O 1.21283 * 119.99638 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00068 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00084 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47208 * 179.97438 * 11 10 8 13 13 C 1.53352 * 109.41800 * 295.12674 * 12 11 10 14 14 C 1.53190 * 109.15070 * 178.67720 * 13 12 11 15 15 N 1.46925 * 108.89356 * 54.57285 * 14 13 12 16 16 C 1.36935 * 120.62758 * 126.30089 * 15 14 13 17 17 H 1.08001 * 120.00088 * 332.62829 * 16 15 14 18 18 C 1.38817 * 119.99782 * 152.62208 * 16 15 14 19 19 N 1.31618 * 119.99923 * 159.36242 * 18 16 15 20 20 Si 1.86801 * 120.00195 * 339.36341 * 18 16 15 21 21 H 1.48501 * 109.47054 * 92.89675 * 20 18 16 22 22 H 1.48497 * 109.47324 * 212.90179 * 20 18 16 23 23 H 1.48501 * 109.46722 * 332.89954 * 20 18 16 24 24 C 1.46926 * 118.73822 * 306.31916 * 15 14 13 25 25 C 1.53037 * 109.46053 * 174.99519 * 12 11 10 26 26 H 1.08998 * 109.47465 * 299.99649 * 1 2 3 27 27 H 1.08996 * 109.47279 * 60.00323 * 1 2 3 28 28 H 1.09008 * 109.46879 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47112 * 239.99943 * 2 1 3 30 30 H 1.08999 * 109.46845 * 119.99938 * 2 1 3 31 31 H 1.08997 * 109.47330 * 60.00077 * 3 2 1 32 32 H 1.09006 * 109.46767 * 299.99929 * 3 2 1 33 33 H 1.09001 * 109.46655 * 296.04396 * 5 4 3 34 34 H 1.08992 * 109.47191 * 56.04400 * 5 4 3 35 35 H 1.08995 * 109.47127 * 176.04980 * 5 4 3 36 36 H 1.09005 * 109.47066 * 69.99905 * 6 4 3 37 37 H 1.08997 * 109.47149 * 310.00589 * 6 4 3 38 38 H 1.08996 * 109.47061 * 60.00028 * 7 6 4 39 39 H 1.09008 * 109.46669 * 300.00104 * 7 6 4 40 40 H 0.97004 * 120.00152 * 359.97438 * 10 8 7 41 41 H 1.08996 * 109.47010 * 59.99318 * 11 10 8 42 42 H 1.08996 * 109.46600 * 299.99324 * 11 10 8 43 43 H 1.09008 * 109.45887 * 55.02318 * 12 11 10 44 44 H 1.09004 * 109.68561 * 58.70472 * 13 12 11 45 45 H 1.09004 * 109.47287 * 298.51133 * 13 12 11 46 46 H 1.09004 * 109.58215 * 294.71811 * 14 13 12 47 47 H 1.08997 * 109.58828 * 174.43980 * 14 13 12 48 48 H 0.96999 * 119.99917 * 180.02562 * 19 18 16 49 49 H 1.09002 * 109.58248 * 173.39705 * 24 15 14 50 50 H 1.08994 * 109.58922 * 293.68210 * 24 15 14 51 51 H 1.09003 * 109.49698 * 61.43697 * 25 12 11 52 52 H 1.08994 * 109.52761 * 301.35110 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0006 5 6 4.0349 0.8859 1.2542 6 6 4.0354 2.7932 -0.2376 7 6 5.5446 2.7172 -0.4779 8 6 6.0848 4.1028 -0.7217 9 8 5.3363 5.0570 -0.7052 10 7 7.3993 4.2815 -0.9589 11 6 7.9244 5.6284 -1.1964 12 6 9.4335 5.5525 -1.4366 13 6 10.1288 5.0615 -0.1610 14 6 11.6352 4.9561 -0.4184 15 7 12.1246 6.2495 -0.9148 16 6 13.1743 6.8800 -0.3018 17 1 13.3691 6.7093 0.7467 18 6 13.9882 7.7385 -1.0282 19 7 14.7170 8.6396 -0.4043 20 14 14.0490 7.6150 -2.8911 21 1 13.0600 8.5520 -3.4819 22 1 15.4108 7.9681 -3.3665 23 1 13.7245 6.2265 -3.3059 24 6 11.4661 6.8537 -2.0810 25 6 9.9612 6.9403 -1.8075 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9563 -0.8901 33 1 3.7435 1.5265 2.0866 34 1 3.6292 -0.1142 1.4060 35 1 5.1222 0.8327 1.2001 36 1 3.8371 3.4191 0.6325 37 1 3.5493 3.2235 -1.1131 38 1 5.7428 2.0913 -1.3480 39 1 6.0307 2.2869 0.3977 40 1 7.9979 3.5182 -0.9724 41 1 7.7263 6.2542 -0.3263 42 1 7.4380 6.0587 -2.0718 43 1 9.6371 4.8570 -2.2510 44 1 9.7377 4.0826 0.1168 45 1 9.9465 5.7693 0.6476 46 1 11.8254 4.1833 -1.1632 47 1 12.1477 4.7032 0.5097 48 1 15.2854 9.2397 -0.9119 49 1 11.8652 7.8541 -2.2484 50 1 11.6446 6.2369 -2.9617 51 1 9.7804 7.6305 -0.9834 52 1 9.4492 7.2980 -2.7007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225237511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:40 Heat of formation + Delta-G solvation = -52.657378 kcal Electronic energy + Delta-G solvation = -25917.780037 eV Core-core repulsion = 22337.161377 eV Total energy + Delta-G solvation = -3580.618659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.94241 -39.61077 -38.77707 -36.47532 -34.63670 -34.48420 -32.94580 -31.89381 -31.58920 -28.62649 -28.07964 -26.36782 -25.30184 -24.26373 -23.01070 -22.49714 -21.61221 -21.26118 -20.72439 -18.80459 -18.19343 -17.31100 -17.05740 -16.85516 -16.48276 -16.14418 -15.91848 -15.56907 -15.42570 -15.26971 -15.08213 -14.79176 -14.55320 -14.37513 -14.02044 -13.87321 -13.78466 -13.56048 -13.38192 -13.04418 -12.92586 -12.79082 -12.66166 -12.54222 -12.40783 -12.24499 -12.11638 -11.89203 -11.77671 -11.72171 -11.58331 -11.42414 -11.30733 -11.18826 -10.89414 -10.65018 -10.05229 -9.35521 -8.91064 -8.16036 -5.47051 1.30813 1.41591 1.50986 1.66986 2.16774 2.42509 3.00027 3.06810 3.38769 3.78983 3.83941 3.87216 3.91699 3.97223 4.08916 4.13668 4.21513 4.39224 4.44119 4.45567 4.50614 4.55427 4.57631 4.60382 4.64496 4.70263 4.75779 4.78150 4.84210 4.87270 4.89964 4.96820 4.99386 5.02245 5.09199 5.11916 5.17838 5.22133 5.22900 5.28707 5.30976 5.42579 5.44988 5.61496 5.88198 6.03760 6.08871 6.13388 6.59752 6.94380 7.28955 7.65072 8.04948 9.04043 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.041991 B = 0.001959 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.642336 B =14288.421317 C =14523.026611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.052 3.948 4 N -0.546 5.546 5 C 0.014 3.986 6 C 0.075 3.925 7 C -0.126 4.126 8 C 0.510 3.490 9 O -0.593 6.593 10 N -0.715 5.715 11 C 0.134 3.866 12 C -0.079 4.079 13 C -0.118 4.118 14 C 0.141 3.859 15 N -0.622 5.622 16 C -0.249 4.249 17 H 0.049 0.951 18 C -0.039 4.039 19 N -0.960 5.960 20 Si 0.950 3.050 21 H -0.276 1.276 22 H -0.313 1.313 23 H -0.257 1.257 24 C 0.120 3.880 25 C -0.121 4.121 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.020 0.980 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.024 0.976 37 H 0.068 0.932 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.416 0.584 41 H 0.050 0.950 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.044 0.956 46 H 0.042 0.958 47 H 0.051 0.949 48 H 0.261 0.739 49 H 0.045 0.955 50 H 0.038 0.962 51 H 0.050 0.950 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.738 -20.215 -1.548 32.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.076 4.076 4 N -0.270 5.270 5 C -0.134 4.134 6 C -0.054 4.054 7 C -0.165 4.165 8 C 0.298 3.702 9 O -0.474 6.474 10 N -0.367 5.367 11 C 0.010 3.990 12 C -0.098 4.098 13 C -0.157 4.157 14 C 0.016 3.984 15 N -0.346 5.346 16 C -0.378 4.378 17 H 0.066 0.934 18 C -0.233 4.233 19 N -0.606 5.606 20 Si 0.779 3.221 21 H -0.203 1.203 22 H -0.242 1.242 23 H -0.182 1.182 24 C -0.005 4.005 25 C -0.161 4.161 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.254 0.746 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.063 0.937 50 H 0.056 0.944 51 H 0.069 0.931 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.990 -19.751 -1.918 32.699 hybrid contribution 0.718 1.077 0.171 1.306 sum -25.272 -18.674 -1.748 31.471 Atomic orbital electron populations 1.21736 0.95003 1.02287 1.01849 1.21500 0.95890 0.95263 1.02680 1.22216 0.86588 0.98154 1.00607 1.62027 1.08157 1.21205 1.35603 1.22591 1.01679 1.00239 0.88911 1.21702 0.94319 0.88835 1.00536 1.21590 0.96005 0.92620 1.06334 1.21180 0.81930 0.91998 0.75115 1.90697 1.58598 1.44854 1.53203 1.45952 1.08620 1.10248 1.71872 1.21233 0.93058 0.84042 1.00653 1.21231 0.92301 0.97410 0.98857 1.22013 0.95407 1.01510 0.96736 1.21140 0.93657 0.85846 0.97730 1.44497 1.35194 1.20661 1.34294 1.18877 1.04726 1.21382 0.92852 0.93368 1.25940 0.97383 0.97739 1.02234 1.69981 1.32428 1.20954 1.37237 0.85860 0.75180 0.79004 0.82075 1.20275 1.24194 1.18152 1.21392 0.93010 0.96590 0.89510 1.21885 0.95455 0.97112 1.01621 0.92868 0.92642 0.91757 0.91366 0.91577 0.95327 0.91112 0.96124 0.90076 0.90012 0.95791 0.91359 0.86013 0.86750 0.74616 0.93187 0.91872 0.89086 0.88944 0.93754 0.94032 0.93041 0.93063 0.93713 0.94425 0.93138 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 71.98 0.71 -0.60 16 2 C -0.12 -1.19 5.87 30.60 0.18 -1.01 16 3 C 0.05 0.69 4.96 86.30 0.43 1.12 16 4 N -0.55 -7.68 4.76 -922.47 -4.39 -12.08 16 5 C 0.01 0.15 9.13 127.69 1.17 1.32 16 6 C 0.07 1.27 4.25 86.30 0.37 1.63 16 7 C -0.13 -1.70 5.62 29.85 0.17 -1.53 16 8 C 0.51 10.72 7.83 87.66 0.69 11.41 16 9 O -0.59 -18.14 15.98 -3.04 -0.05 -18.19 16 10 N -0.71 -12.92 5.27 -463.07 -2.44 -15.37 16 11 C 0.13 3.11 5.07 86.38 0.44 3.54 16 12 C -0.08 -1.96 2.19 -10.66 -0.02 -1.98 16 13 C -0.12 -3.16 5.27 30.78 0.16 -3.00 16 14 C 0.14 4.96 6.50 86.36 0.56 5.52 16 15 N -0.62 -28.35 2.77 -699.10 -1.94 -30.29 16 16 C -0.25 -14.10 10.03 84.03 0.84 -13.25 16 17 H 0.05 3.01 8.06 -2.91 -0.02 2.98 16 18 C -0.04 -2.26 5.23 84.86 0.44 -1.82 16 19 N -0.96 -60.87 13.97 21.65 0.30 -60.57 16 20 Si 0.95 46.44 24.34 68.60 1.67 48.11 16 21 H -0.28 -12.78 6.62 99.48 0.66 -12.12 16 22 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 23 H -0.26 -11.82 6.64 99.48 0.66 -11.16 16 24 C 0.12 4.87 4.21 86.36 0.36 5.23 16 25 C -0.12 -3.83 5.36 30.67 0.16 -3.67 16 26 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.05 0.48 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.63 6.47 -2.39 -0.02 0.61 16 31 H 0.03 0.40 8.12 -2.39 -0.02 0.39 16 32 H 0.07 0.98 7.93 -2.38 -0.02 0.96 16 33 H 0.02 0.25 8.14 -2.39 -0.02 0.24 16 34 H 0.08 0.75 6.30 -2.39 -0.02 0.73 16 35 H 0.08 0.73 6.47 -2.39 -0.02 0.71 16 36 H 0.02 0.49 8.08 -2.38 -0.02 0.47 16 37 H 0.07 1.34 7.89 -2.39 -0.02 1.32 16 38 H 0.12 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.11 1.11 6.55 -2.38 -0.02 1.09 16 40 H 0.42 5.01 7.65 -92.71 -0.71 4.30 16 41 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.09 1.77 7.16 -2.38 -0.02 1.75 16 45 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 48 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 49 H 0.04 2.07 4.50 -2.39 -0.01 2.06 16 50 H 0.04 1.44 7.07 -2.39 -0.02 1.43 16 51 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -73.02 393.23 -0.12 -73.14 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.07 Total: 12.33 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 6.66 Total: 2.91 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -8.47 Total: -118.30 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.05 Total: -18.19 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.67 Total: 48.11 kcal Total: -73.02 -0.12 -73.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225237511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.486 kcal (2) G-P(sol) polarization free energy of solvation -73.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds