Wall clock time and date at job start Tue Mar 31 2020 10:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47366 * 2 1 4 4 C 1.53002 * 109.47176 * 119.99583 * 2 1 3 5 5 C 1.50703 * 109.47207 * 300.00051 * 4 2 1 6 6 H 1.07994 * 119.99603 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00380 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99848 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47261 * 239.99776 * 9 7 5 12 12 H 1.48500 * 109.47454 * 119.99769 * 9 7 5 13 13 C 1.53001 * 109.47423 * 239.99469 * 2 1 3 14 14 N 1.46503 * 109.46798 * 59.99897 * 13 2 1 15 15 C 1.34774 * 120.00078 * 179.97438 * 14 13 2 16 16 O 1.21582 * 119.99937 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99899 * 179.97438 * 15 14 13 18 18 C 1.46957 * 120.36522 * 359.72960 * 17 15 14 19 19 C 1.51803 * 109.39990 * 291.89453 * 18 17 15 20 20 C 1.53802 * 109.05841 * 287.19645 * 19 18 17 21 21 C 1.52447 * 109.40321 * 77.78677 * 20 19 18 22 22 C 1.53951 * 110.73090 * 246.27282 * 21 20 19 23 23 C 1.52882 * 109.73374 * 44.36310 * 22 21 20 24 24 H 1.08998 * 109.48448 * 312.92680 * 23 22 21 25 25 N 1.46895 * 109.50443 * 192.87855 * 23 22 21 26 26 C 1.45336 * 120.36211 * 180.02562 * 17 15 14 27 27 H 1.09000 * 109.47074 * 300.00216 * 1 2 3 28 28 H 1.08995 * 109.47527 * 60.00564 * 1 2 3 29 29 H 1.08998 * 109.47142 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47330 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46541 * 300.00001 * 3 2 1 32 32 H 1.09004 * 109.47445 * 59.99402 * 3 2 1 33 33 H 1.09005 * 109.47493 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47006 * 60.00014 * 4 2 1 35 35 H 0.97001 * 119.99667 * 0.02562 * 8 7 5 36 36 H 1.08999 * 109.47147 * 179.97438 * 13 2 1 37 37 H 1.08998 * 109.47134 * 300.00215 * 13 2 1 38 38 H 0.97009 * 119.99709 * 0.02562 * 14 13 2 39 39 H 1.09000 * 109.53795 * 51.52384 * 18 17 15 40 40 H 1.09002 * 109.53039 * 171.75134 * 18 17 15 41 41 H 1.08997 * 109.61068 * 167.29849 * 19 18 17 42 42 H 1.08998 * 109.58407 * 47.07787 * 19 18 17 43 43 H 1.09004 * 109.48187 * 317.80847 * 20 19 18 44 44 H 1.09000 * 109.49152 * 197.77300 * 20 19 18 45 45 H 1.08996 * 109.22536 * 125.94850 * 21 20 19 46 46 H 1.08996 * 109.19036 * 6.57360 * 21 20 19 47 47 H 1.09002 * 109.42917 * 284.29123 * 22 21 20 48 48 H 1.09003 * 109.43187 * 164.44312 * 22 21 20 49 49 H 1.00901 * 111.00129 * 180.08405 * 25 23 22 50 50 H 1.00900 * 111.00357 * 304.03923 * 25 23 22 51 51 H 1.09002 * 109.67603 * 256.38851 * 26 17 15 52 52 H 1.08998 * 109.67607 * 16.89609 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5376 -0.0107 2.4798 6 1 0.9171 0.8676 2.3806 7 6 1.8712 -0.4814 3.7320 8 7 2.6273 -1.5506 3.8528 9 14 1.2479 0.3989 5.2572 10 1 0.4225 1.5653 4.8530 11 1 2.4026 0.8665 6.0654 12 1 0.4237 -0.5350 6.0657 13 6 2.0400 -0.7214 -1.2492 14 7 1.5516 -0.0308 -2.4454 15 6 1.8777 -0.4910 -3.6695 16 8 2.5767 -1.4795 -3.7810 17 7 1.4279 0.1440 -4.7699 18 6 0.5767 1.3354 -4.6445 19 6 -0.7712 0.9341 -4.0731 20 6 -1.5701 0.1826 -5.1513 21 6 -1.0530 -1.2474 -5.2602 22 6 -0.3862 -1.4831 -6.6276 23 6 0.5174 -0.2991 -6.9723 24 1 -0.0188 0.6324 -6.7909 25 7 0.9053 -0.3737 -8.3871 26 6 1.7742 -0.3457 -6.0938 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.1300 -0.7208 1.2496 34 1 1.6766 -1.7488 1.2494 35 1 2.9506 -2.0079 3.0608 36 1 3.1300 -0.7209 -1.2493 37 1 1.6767 -1.7490 -1.2491 38 1 0.9942 0.7581 -2.3564 39 1 1.0503 2.0528 -3.9743 40 1 0.4374 1.7887 -5.6259 41 1 -1.3195 1.8255 -3.7686 42 1 -0.6236 0.2847 -3.2102 43 1 -1.4499 0.6866 -6.1103 44 1 -2.6252 0.1678 -4.8781 45 1 -1.8862 -1.9403 -5.1429 46 1 -0.3239 -1.4259 -4.4699 47 1 -1.1554 -1.5868 -7.3930 48 1 0.2100 -2.3948 -6.5880 49 1 1.5045 0.3980 -8.6390 50 1 1.3467 -1.2569 -8.5950 51 1 2.5488 0.2865 -6.5280 52 1 2.1350 -1.3718 -6.0227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575299085.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:10 Heat of formation + Delta-G solvation = -45.101235 kcal Electronic energy + Delta-G solvation = -28217.399018 eV Core-core repulsion = 24637.108018 eV Total energy + Delta-G solvation = -3580.291000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.93479 -38.50264 -37.14564 -35.38301 -34.17605 -33.61932 -32.08926 -30.94382 -27.61584 -26.78870 -26.65415 -26.60212 -25.64571 -23.33260 -22.53990 -22.38266 -20.14484 -19.57307 -18.64964 -17.57074 -17.03205 -16.55103 -16.40873 -15.81828 -15.06163 -14.74588 -14.57244 -14.50289 -14.14424 -13.92642 -13.88010 -13.71876 -13.48216 -13.18360 -12.85373 -12.79553 -12.24323 -12.15381 -11.98789 -11.75842 -11.61203 -11.35084 -11.22335 -11.17389 -11.02563 -10.94625 -10.75981 -10.65211 -10.48609 -10.24513 -10.12910 -10.06099 -9.99583 -9.47854 -9.30937 -8.85244 -8.47553 -8.39561 -8.31277 -6.33174 -4.02295 2.67485 3.30304 3.43112 3.47053 3.58952 3.95966 4.17516 4.38191 4.50745 4.54536 4.61568 4.65359 4.80757 4.90596 5.08323 5.17733 5.29274 5.36590 5.38338 5.40928 5.43868 5.49190 5.55857 5.63252 5.64981 5.71650 5.81021 5.88507 5.99285 6.02627 6.09879 6.11439 6.16329 6.23018 6.31786 6.40243 6.51240 6.54773 6.71957 6.75014 6.93166 6.98082 6.98423 7.02504 7.04669 7.35054 7.49667 8.04228 8.22126 8.48251 8.71823 8.90380 9.68813 11.06885 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.028114 B = 0.003015 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.701231 B = 9283.543279 C = 9583.933644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.065 4.065 3 C -0.125 4.125 4 C 0.023 3.977 5 C -0.591 4.591 6 H 0.054 0.946 7 C 0.013 3.987 8 N -0.915 5.915 9 Si 1.071 2.929 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.144 3.856 14 N -0.736 5.736 15 C 0.704 3.296 16 O -0.594 6.594 17 N -0.623 5.623 18 C 0.106 3.894 19 C -0.155 4.155 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.108 4.108 23 C 0.064 3.936 24 H 0.098 0.902 25 N -0.840 5.840 26 C 0.099 3.901 27 H 0.068 0.932 28 H 0.028 0.972 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.009 0.991 34 H 0.009 0.991 35 H 0.270 0.730 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.396 0.604 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.341 0.659 50 H 0.341 0.659 51 H 0.052 0.948 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.064 6.825 -22.561 24.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.065 4.065 3 C -0.182 4.182 4 C -0.014 4.014 5 C -0.629 4.629 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.552 5.552 9 Si 0.900 3.100 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.215 1.215 13 C 0.020 3.980 14 N -0.392 5.392 15 C 0.405 3.595 16 O -0.472 6.472 17 N -0.362 5.362 18 C -0.017 4.017 19 C -0.193 4.193 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.146 4.146 23 C -0.048 4.048 24 H 0.116 0.884 25 N -0.368 5.368 26 C -0.027 4.027 27 H 0.087 0.913 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.233 0.767 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.154 0.846 50 H 0.153 0.847 51 H 0.071 0.929 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.295 6.130 -21.128 23.177 hybrid contribution 0.777 0.308 -1.228 1.485 sum -6.518 6.438 -22.356 24.160 Atomic orbital electron populations 1.21746 0.95108 1.01114 1.00254 1.20755 0.95574 0.95803 0.94405 1.21741 1.00443 0.95816 1.00219 1.19214 0.95673 0.95180 0.91377 1.22023 1.34796 1.14369 0.91722 0.92790 1.25779 0.95330 0.96577 1.01378 1.70709 1.32574 1.18313 1.33601 0.83514 0.76047 0.75194 0.75235 1.21594 1.21492 1.21477 1.21497 0.98603 0.95669 0.82216 1.45577 1.56045 1.33133 1.04461 1.15908 0.80265 0.82716 0.80597 1.90900 1.43064 1.27619 1.85665 1.46839 1.54063 1.30395 1.04853 1.21493 0.90596 0.87306 1.02321 1.22263 0.95983 1.01575 0.99523 1.21752 0.99264 0.95887 0.98810 1.21694 1.00158 0.96507 0.97540 1.21705 0.98706 0.96981 0.97193 1.22323 0.95061 1.01021 0.86400 0.88447 1.59030 1.51119 1.08156 1.18519 1.22213 0.96937 1.01350 0.82236 0.91302 0.95273 0.93462 0.93473 0.95360 0.91281 0.97303 0.97284 0.91987 0.92185 0.92121 0.76727 0.91418 0.89381 0.90435 0.90371 0.91119 0.91943 0.92281 0.91375 0.91239 0.92114 0.84643 0.84678 0.92945 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.05 37.15 0.30 -1.90 16 2 C -0.06 -1.24 0.54 -154.51 -0.08 -1.32 16 3 C -0.12 -2.22 8.05 37.16 0.30 -1.92 16 4 C 0.02 0.56 3.35 -27.88 -0.09 0.47 16 5 C -0.59 -15.78 7.65 -34.44 -0.26 -16.04 16 6 H 0.05 1.40 5.68 -52.49 -0.30 1.11 16 7 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 8 N -0.92 -27.76 13.65 55.43 0.76 -27.00 16 9 Si 1.07 24.95 29.90 -169.99 -5.08 19.87 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 13 C 0.14 2.60 4.56 -4.04 -0.02 2.58 16 14 N -0.74 -10.99 4.15 -65.22 -0.27 -11.26 16 15 C 0.70 10.95 6.76 -86.92 -0.59 10.36 16 16 O -0.59 -11.71 15.78 5.29 0.08 -11.63 16 17 N -0.62 -7.04 1.70 -180.45 -0.31 -7.35 16 18 C 0.11 0.89 4.90 -4.40 -0.02 0.87 16 19 C -0.15 -1.29 5.17 -26.92 -0.14 -1.43 16 20 C -0.12 -0.97 5.49 -26.60 -0.15 -1.11 16 21 C -0.12 -1.19 5.40 -26.52 -0.14 -1.33 16 22 C -0.11 -0.97 5.29 -26.30 -0.14 -1.11 16 23 C 0.06 0.50 2.77 -67.56 -0.19 0.32 16 24 H 0.10 0.74 3.35 -51.93 -0.17 0.57 16 25 N -0.84 -5.63 9.26 -4.54 -0.04 -5.68 16 26 C 0.10 0.99 5.60 -4.45 -0.02 0.96 16 27 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 28 H 0.03 0.41 6.66 -51.93 -0.35 0.07 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.03 0.41 6.86 -51.92 -0.36 0.05 16 32 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 33 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 34 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 35 H 0.27 8.19 7.22 -40.82 -0.29 7.89 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.40 5.11 3.21 -40.82 -0.13 4.98 16 39 H 0.07 0.56 7.59 -51.93 -0.39 0.16 16 40 H 0.09 0.57 6.06 -51.93 -0.31 0.26 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.83 5.44 -51.93 -0.28 0.55 16 43 H 0.07 0.51 5.47 -51.93 -0.28 0.23 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.86 5.37 -51.93 -0.28 0.58 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 49 H 0.34 1.82 8.99 -39.29 -0.35 1.47 16 50 H 0.34 2.10 8.98 -39.29 -0.35 1.75 16 51 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 52 H 0.09 1.11 6.79 -51.93 -0.35 0.76 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -31.76 372.81 -9.33 -41.09 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -8.74 Total: 6.67 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -1.35 Total: -10.34 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.14 Total: -51.28 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.76 -9.33 -41.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575299085.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.009 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds