Wall clock time and date at job start Tue Mar 31 2020 10:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47366 * 2 1 4 4 C 1.53002 * 109.47176 * 119.99583 * 2 1 3 5 5 C 1.50703 * 109.47207 * 300.00051 * 4 2 1 6 6 H 1.07994 * 119.99603 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00380 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99848 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47261 * 239.99776 * 9 7 5 12 12 H 1.48500 * 109.47454 * 119.99769 * 9 7 5 13 13 C 1.53001 * 109.47423 * 239.99469 * 2 1 3 14 14 N 1.46503 * 109.46798 * 59.99897 * 13 2 1 15 15 C 1.34774 * 120.00078 * 179.97438 * 14 13 2 16 16 O 1.21582 * 119.99937 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99899 * 179.97438 * 15 14 13 18 18 C 1.46957 * 120.36522 * 359.72960 * 17 15 14 19 19 C 1.51803 * 109.39990 * 291.89453 * 18 17 15 20 20 C 1.53802 * 109.05841 * 287.19645 * 19 18 17 21 21 C 1.52447 * 109.40321 * 77.78677 * 20 19 18 22 22 C 1.53951 * 110.73090 * 246.27282 * 21 20 19 23 23 C 1.52882 * 109.73374 * 44.36310 * 22 21 20 24 24 H 1.08998 * 109.48448 * 312.92680 * 23 22 21 25 25 N 1.46895 * 109.50443 * 192.87855 * 23 22 21 26 26 C 1.45336 * 120.36211 * 180.02562 * 17 15 14 27 27 H 1.09000 * 109.47074 * 300.00216 * 1 2 3 28 28 H 1.08995 * 109.47527 * 60.00564 * 1 2 3 29 29 H 1.08998 * 109.47142 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47330 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46541 * 300.00001 * 3 2 1 32 32 H 1.09004 * 109.47445 * 59.99402 * 3 2 1 33 33 H 1.09005 * 109.47493 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47006 * 60.00014 * 4 2 1 35 35 H 0.97001 * 119.99667 * 0.02562 * 8 7 5 36 36 H 1.08999 * 109.47147 * 179.97438 * 13 2 1 37 37 H 1.08998 * 109.47134 * 300.00215 * 13 2 1 38 38 H 0.97009 * 119.99709 * 0.02562 * 14 13 2 39 39 H 1.09000 * 109.53795 * 51.52384 * 18 17 15 40 40 H 1.09002 * 109.53039 * 171.75134 * 18 17 15 41 41 H 1.08997 * 109.61068 * 167.29849 * 19 18 17 42 42 H 1.08998 * 109.58407 * 47.07787 * 19 18 17 43 43 H 1.09004 * 109.48187 * 317.80847 * 20 19 18 44 44 H 1.09000 * 109.49152 * 197.77300 * 20 19 18 45 45 H 1.08996 * 109.22536 * 125.94850 * 21 20 19 46 46 H 1.08996 * 109.19036 * 6.57360 * 21 20 19 47 47 H 1.09002 * 109.42917 * 284.29123 * 22 21 20 48 48 H 1.09003 * 109.43187 * 164.44312 * 22 21 20 49 49 H 1.00901 * 111.00129 * 180.08405 * 25 23 22 50 50 H 1.00900 * 111.00357 * 304.03923 * 25 23 22 51 51 H 1.09002 * 109.67603 * 256.38851 * 26 17 15 52 52 H 1.08998 * 109.67607 * 16.89609 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5376 -0.0107 2.4798 6 1 0.9171 0.8676 2.3806 7 6 1.8712 -0.4814 3.7320 8 7 2.6273 -1.5506 3.8528 9 14 1.2479 0.3989 5.2572 10 1 0.4225 1.5653 4.8530 11 1 2.4026 0.8665 6.0654 12 1 0.4237 -0.5350 6.0657 13 6 2.0400 -0.7214 -1.2492 14 7 1.5516 -0.0308 -2.4454 15 6 1.8777 -0.4910 -3.6695 16 8 2.5767 -1.4795 -3.7810 17 7 1.4279 0.1440 -4.7699 18 6 0.5767 1.3354 -4.6445 19 6 -0.7712 0.9341 -4.0731 20 6 -1.5701 0.1826 -5.1513 21 6 -1.0530 -1.2474 -5.2602 22 6 -0.3862 -1.4831 -6.6276 23 6 0.5174 -0.2991 -6.9723 24 1 -0.0188 0.6324 -6.7909 25 7 0.9053 -0.3737 -8.3871 26 6 1.7742 -0.3457 -6.0938 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 3.1300 -0.7208 1.2496 34 1 1.6766 -1.7488 1.2494 35 1 2.9506 -2.0079 3.0608 36 1 3.1300 -0.7209 -1.2493 37 1 1.6767 -1.7490 -1.2491 38 1 0.9942 0.7581 -2.3564 39 1 1.0503 2.0528 -3.9743 40 1 0.4374 1.7887 -5.6259 41 1 -1.3195 1.8255 -3.7686 42 1 -0.6236 0.2847 -3.2102 43 1 -1.4499 0.6866 -6.1103 44 1 -2.6252 0.1678 -4.8781 45 1 -1.8862 -1.9403 -5.1429 46 1 -0.3239 -1.4259 -4.4699 47 1 -1.1554 -1.5868 -7.3930 48 1 0.2100 -2.3948 -6.5880 49 1 1.5045 0.3980 -8.6390 50 1 1.3467 -1.2569 -8.5950 51 1 2.5488 0.2865 -6.5280 52 1 2.1350 -1.3718 -6.0227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575299085.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:09 Heat of formation + Delta-G solvation = -65.875804 kcal Electronic energy + Delta-G solvation = -28218.299871 eV Core-core repulsion = 24637.108018 eV Total energy + Delta-G solvation = -3581.191853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.96607 -39.65148 -38.58731 -36.23891 -35.31855 -35.00468 -33.80023 -31.65078 -28.91402 -28.39330 -28.07675 -27.51591 -26.92160 -24.92456 -23.78852 -23.09843 -21.27328 -20.54778 -20.03975 -18.77677 -18.45731 -17.89256 -17.32773 -16.70970 -16.21999 -16.11627 -15.73296 -15.59551 -15.30701 -15.22287 -15.20446 -14.88767 -14.44896 -14.32376 -14.21851 -13.75418 -13.66725 -13.56104 -13.08033 -12.95141 -12.83827 -12.70767 -12.63335 -12.42552 -12.31493 -12.03374 -11.89335 -11.87406 -11.66745 -11.65011 -11.52847 -11.40763 -11.21899 -11.15893 -10.50869 -10.50071 -10.24546 -9.90369 -9.30465 -8.59547 -6.28628 1.54566 1.60856 1.64102 1.78533 2.08148 2.60472 2.91931 3.24005 3.52269 3.65930 3.83943 3.85487 3.91162 3.96656 3.99166 4.08442 4.11379 4.21634 4.40968 4.45274 4.54218 4.55904 4.59824 4.62785 4.68934 4.71050 4.79053 4.85899 4.93020 4.96885 4.99916 5.06162 5.11957 5.16414 5.24607 5.28440 5.30976 5.31826 5.35056 5.43679 5.45550 5.48583 5.58789 5.63392 5.90318 6.09025 6.17631 6.28069 6.55039 6.65009 6.91797 7.51623 7.52410 8.80443 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.028114 B = 0.003015 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.701231 B = 9283.543279 C = 9583.933644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.057 4.057 3 C -0.119 4.119 4 C 0.025 3.975 5 C -0.586 4.586 6 H 0.067 0.933 7 C -0.047 4.047 8 N -0.948 5.948 9 Si 1.119 2.881 10 H -0.262 1.262 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.159 3.841 14 N -0.722 5.722 15 C 0.700 3.300 16 O -0.644 6.644 17 N -0.612 5.612 18 C 0.098 3.902 19 C -0.154 4.154 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.106 4.106 23 C 0.079 3.921 24 H 0.112 0.888 25 N -0.838 5.838 26 C 0.097 3.903 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.057 0.943 33 H -0.019 1.019 34 H -0.020 1.020 35 H 0.252 0.748 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.409 0.591 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.054 0.946 46 H 0.036 0.964 47 H 0.077 0.923 48 H 0.042 0.958 49 H 0.352 0.648 50 H 0.344 0.656 51 H 0.068 0.932 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.207 10.284 -24.361 28.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.058 4.058 3 C -0.176 4.176 4 C -0.013 4.013 5 C -0.624 4.624 6 H 0.085 0.915 7 C -0.243 4.243 8 N -0.587 5.587 9 Si 0.941 3.059 10 H -0.186 1.186 11 H -0.211 1.211 12 H -0.212 1.212 13 C 0.034 3.966 14 N -0.380 5.380 15 C 0.401 3.599 16 O -0.526 6.526 17 N -0.348 5.348 18 C -0.023 4.023 19 C -0.192 4.192 20 C -0.152 4.152 21 C -0.159 4.159 22 C -0.144 4.144 23 C -0.033 4.033 24 H 0.130 0.870 25 N -0.367 5.367 26 C -0.029 4.029 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.077 0.923 33 H -0.001 1.001 34 H -0.001 1.001 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.249 0.751 39 H 0.096 0.904 40 H 0.136 0.864 41 H 0.122 0.878 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.095 0.905 48 H 0.061 0.939 49 H 0.166 0.834 50 H 0.156 0.844 51 H 0.086 0.914 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.475 9.648 -22.991 26.673 hybrid contribution 1.450 -0.820 -0.786 1.842 sum -8.025 8.828 -23.777 26.602 Atomic orbital electron populations 1.21663 0.93380 1.00810 1.01649 1.20583 0.96822 0.96271 0.92083 1.21666 0.99781 0.94492 1.01655 1.19142 0.93883 0.94283 0.93995 1.22388 1.33648 1.14187 0.92194 0.91528 1.27345 0.95007 0.96553 1.05402 1.70857 1.34982 1.20121 1.32722 0.82911 0.76024 0.75067 0.71865 1.18582 1.21143 1.21154 1.21044 0.97304 0.94903 0.83323 1.45214 1.56138 1.33253 1.03427 1.16094 0.79978 0.82389 0.81438 1.90868 1.45356 1.29942 1.86419 1.46872 1.53379 1.30646 1.03929 1.21838 0.90057 0.86001 1.04445 1.22259 0.96185 1.02140 0.98618 1.21735 0.99528 0.94336 0.99596 1.21680 0.99230 0.98173 0.96836 1.21672 0.98832 0.96863 0.97005 1.22178 0.93667 1.00906 0.86548 0.87017 1.59044 1.51600 1.08885 1.17198 1.22364 0.98597 0.99961 0.81961 0.92385 0.91239 0.94710 0.94587 0.91281 0.92348 1.00107 1.00145 0.93825 0.94155 0.94236 0.75149 0.90353 0.86444 0.87755 0.92791 0.89514 0.91212 0.92692 0.94539 0.90468 0.93934 0.83403 0.84379 0.91399 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 2 C -0.06 -2.19 0.54 -52.18 -0.03 -2.21 16 3 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 4 C 0.02 1.25 3.35 29.85 0.10 1.35 16 5 C -0.59 -31.65 7.65 25.60 0.20 -31.45 16 6 H 0.07 3.39 5.68 -2.91 -0.02 3.37 16 7 C -0.05 -2.68 5.46 84.65 0.46 -2.21 16 8 N -0.95 -59.57 13.65 21.45 0.29 -59.28 16 9 Si 1.12 49.81 29.90 68.60 2.05 51.86 16 10 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 13 C 0.16 5.95 4.56 86.38 0.39 6.34 16 14 N -0.72 -21.08 4.15 -478.54 -1.98 -23.06 16 15 C 0.70 21.75 6.76 179.05 1.21 22.96 16 16 O -0.64 -26.49 15.78 -3.97 -0.06 -26.55 16 17 N -0.61 -12.85 1.70 -843.07 -1.43 -14.28 16 18 C 0.10 1.27 4.90 85.90 0.42 1.69 16 19 C -0.15 -1.99 5.17 30.47 0.16 -1.83 16 20 C -0.11 -1.48 5.49 30.68 0.17 -1.31 16 21 C -0.12 -2.25 5.40 30.73 0.17 -2.08 16 22 C -0.11 -1.78 5.29 30.88 0.16 -1.62 16 23 C 0.08 1.06 2.77 45.02 0.12 1.19 16 24 H 0.11 1.22 3.35 -2.39 -0.01 1.21 16 25 N -0.84 -9.09 9.26 -168.28 -1.56 -10.65 16 26 C 0.10 1.82 5.60 86.74 0.49 2.30 16 27 H 0.06 2.11 6.62 -2.39 -0.02 2.09 16 28 H 0.07 1.79 6.66 -2.39 -0.02 1.77 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.77 6.86 -2.38 -0.02 1.75 16 32 H 0.06 2.12 6.62 -2.39 -0.02 2.10 16 33 H -0.02 -1.09 8.01 -2.38 -0.02 -1.11 16 34 H -0.02 -1.11 8.01 -2.39 -0.02 -1.13 16 35 H 0.25 16.25 7.22 -92.71 -0.67 15.58 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.41 9.49 3.21 -92.70 -0.30 9.19 16 39 H 0.08 0.92 7.59 -2.39 -0.02 0.90 16 40 H 0.12 0.90 6.06 -2.39 -0.01 0.88 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.05 1.00 5.44 -2.39 -0.01 0.98 16 43 H 0.09 0.86 5.47 -2.39 -0.01 0.85 16 44 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.04 0.92 5.37 -2.39 -0.01 0.91 16 47 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.04 0.86 7.87 -2.39 -0.02 0.84 16 49 H 0.35 2.66 8.99 -89.69 -0.81 1.86 16 50 H 0.34 3.67 8.98 -89.69 -0.81 2.86 16 51 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 52 H 0.06 1.51 6.79 -2.39 -0.02 1.50 16 Total: -1.00 -73.54 372.81 1.62 -71.91 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.87 Total: 23.83 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 5.18 Total: -13.78 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -4.68 Total: -107.27 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.06 Total: -26.55 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.05 Total: 51.86 kcal Total: -73.54 1.62 -71.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575299085.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.036 kcal (2) G-P(sol) polarization free energy of solvation -73.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds