Wall clock time and date at job start Tue Mar 31 2020 10:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46829 * 2 1 4 4 C 1.53000 * 109.47316 * 120.00319 * 2 1 3 5 5 H 1.08995 * 109.46813 * 187.54421 * 4 2 1 6 6 C 1.50703 * 109.46999 * 67.54376 * 4 2 1 7 7 O 1.21280 * 120.00113 * 239.99910 * 6 4 2 8 8 N 1.34776 * 119.99673 * 60.00320 * 6 4 2 9 9 C 1.46498 * 120.00593 * 359.97438 * 8 6 4 10 10 C 1.46506 * 119.99597 * 179.97438 * 8 6 4 11 11 H 1.08996 * 109.46945 * 0.02562 * 10 8 6 12 12 C 1.52997 * 109.47111 * 239.99881 * 10 8 6 13 13 N 1.46499 * 109.46992 * 55.00682 * 12 10 8 14 14 C 1.36934 * 119.99844 * 179.71895 * 13 12 10 15 15 H 1.08002 * 120.00380 * 0.02562 * 14 13 12 16 16 C 1.38816 * 120.00065 * 179.97438 * 14 13 12 17 17 N 1.31616 * 120.00183 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99853 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47229 * 89.99540 * 18 16 14 20 20 H 1.48501 * 109.47011 * 209.99905 * 18 16 14 21 21 H 1.48503 * 109.47008 * 329.99305 * 18 16 14 22 22 C 1.53003 * 109.46697 * 120.00197 * 10 8 6 23 23 C 1.53004 * 117.49734 * 248.74782 * 22 10 8 24 24 C 1.53003 * 117.49867 * 180.08820 * 22 10 8 25 25 N 1.46899 * 109.46912 * 307.54866 * 4 2 1 26 26 C 1.46906 * 110.99923 * 316.31391 * 25 4 2 27 27 C 1.46897 * 111.00330 * 80.26684 * 25 4 2 28 28 H 1.08991 * 109.47204 * 299.76984 * 1 2 3 29 29 H 1.08997 * 109.47376 * 59.77247 * 1 2 3 30 30 H 1.09008 * 109.46744 * 179.76872 * 1 2 3 31 31 H 1.09002 * 109.47238 * 240.00130 * 2 1 3 32 32 H 1.09004 * 109.47025 * 152.94797 * 3 2 1 33 33 H 1.08999 * 109.47252 * 272.94541 * 3 2 1 34 34 H 1.09000 * 109.47197 * 32.94827 * 3 2 1 35 35 H 1.09002 * 109.47095 * 270.00353 * 9 8 6 36 36 H 1.09000 * 109.46885 * 29.99732 * 9 8 6 37 37 H 1.08991 * 109.47593 * 149.99667 * 9 8 6 38 38 H 1.08993 * 109.47202 * 294.99891 * 12 10 8 39 39 H 1.09009 * 109.46780 * 175.00333 * 12 10 8 40 40 H 0.97002 * 120.00398 * 359.97438 * 13 12 10 41 41 H 0.97000 * 120.00244 * 180.02562 * 17 16 14 42 42 H 1.09005 * 115.55103 * 34.41741 * 22 10 8 43 43 H 1.08999 * 117.49839 * 0.02562 * 23 22 10 44 44 H 1.09001 * 117.49868 * 145.01932 * 23 22 10 45 45 H 1.08991 * 117.49780 * 214.98016 * 24 22 10 46 46 H 1.08998 * 117.49320 * 359.97438 * 24 22 10 47 47 H 1.09002 * 109.47015 * 85.78979 * 26 25 4 48 48 H 1.08997 * 109.47459 * 205.79000 * 26 25 4 49 49 H 1.09003 * 109.46936 * 325.78874 * 26 25 4 50 50 H 1.09004 * 109.46689 * 83.65470 * 27 25 4 51 51 H 1.08999 * 109.47267 * 203.64861 * 27 25 4 52 52 H 1.08993 * 109.47211 * 323.65792 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1217 -0.6059 1.3191 6 6 1.6959 -2.1857 1.1594 7 8 0.9929 -2.6965 2.0055 8 7 2.1693 -2.9278 0.1388 9 6 3.0180 -2.3109 -0.8836 10 6 1.8351 -4.3516 0.0518 11 1 1.1997 -4.6277 0.8933 12 6 3.1206 -5.1804 0.0891 13 7 3.8907 -4.8334 1.2860 14 6 5.0843 -5.4560 1.5366 15 1 5.4582 -6.2027 0.8516 16 6 5.8144 -5.1268 2.6704 17 7 6.9618 -5.7249 2.9110 18 14 5.1682 -3.8349 3.8548 19 1 4.3267 -4.4884 4.8893 20 1 6.3105 -3.1467 4.5081 21 1 4.3537 -2.8424 3.1086 22 6 1.0919 -4.6218 -1.2581 23 6 -0.3879 -4.9997 -1.1657 24 6 0.6516 -6.0604 -1.5367 25 7 1.4075 -0.1419 2.4417 26 6 1.3873 1.3251 2.3667 27 6 0.0532 -0.6780 2.6323 28 1 -0.3633 0.5102 0.8920 29 1 -0.3634 0.5173 -0.8879 30 1 -0.3633 -1.0278 -0.0041 31 1 1.8934 -0.5138 -0.8900 32 1 3.0240 1.4800 0.4674 33 1 2.1113 1.8027 -1.0263 34 1 1.3480 2.0725 0.5589 35 1 2.3940 -1.9281 -1.6912 36 1 3.5824 -1.4904 -0.4405 37 1 3.7090 -3.0549 -1.2797 38 1 3.7151 -4.9690 -0.7996 39 1 2.8687 -6.2407 0.1139 40 1 3.5534 -4.1652 1.9030 41 1 7.4718 -5.4951 3.7034 42 1 1.4049 -4.0174 -2.1095 43 1 -0.8320 -5.0553 -0.1719 44 1 -1.0484 -4.6441 -1.9566 45 1 0.6746 -6.4023 -2.5714 46 1 0.8918 -6.8143 -0.7870 47 1 0.5046 1.6485 1.8150 48 1 1.3583 1.7401 3.3742 49 1 2.2840 1.6751 1.8553 50 1 0.1106 -1.6322 3.1562 51 1 -0.5362 0.0248 3.2212 52 1 -0.4196 -0.8245 1.6613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725468558.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:46 Heat of formation + Delta-G solvation = 84.949021 kcal Electronic energy + Delta-G solvation = -29267.188146 eV Core-core repulsion = 25692.536548 eV Total energy + Delta-G solvation = -3574.651598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15616 -38.82199 -37.19285 -35.48526 -34.32574 -32.88534 -31.41094 -29.72419 -29.15629 -27.94380 -26.79863 -25.68698 -24.19673 -22.52047 -22.20548 -21.35314 -21.06249 -19.96613 -19.11914 -17.55474 -17.08961 -16.63516 -16.25986 -15.45550 -14.96842 -14.87350 -14.58367 -14.24197 -14.09685 -13.80185 -13.50689 -13.41605 -13.30226 -13.09645 -12.79526 -12.63758 -12.55949 -12.28292 -12.15810 -11.82731 -11.71495 -11.55320 -11.45688 -11.25760 -11.20068 -11.04682 -10.86582 -10.81364 -10.70441 -10.49815 -10.35703 -10.09233 -9.85505 -9.54079 -9.04932 -8.83806 -8.38443 -7.95695 -7.17918 -5.72610 -3.07564 2.82241 3.04656 3.47236 3.53291 3.58451 3.85100 4.03653 4.47681 4.55720 4.62288 4.66297 4.67949 4.92351 4.97295 5.03637 5.16875 5.23225 5.25826 5.27748 5.35254 5.40216 5.45902 5.47825 5.54201 5.56100 5.57919 5.64400 5.67566 5.69016 5.73316 5.76906 5.83982 5.89900 5.94775 5.96138 5.98624 6.00719 6.04654 6.15668 6.20878 6.35226 6.54189 6.65118 6.87031 7.03788 7.15319 7.61091 8.02989 8.43682 8.46927 9.26364 9.99427 10.19509 11.45371 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.010568 B = 0.006511 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.780925 B = 4299.483785 C = 5968.354836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.134 4.134 3 C -0.164 4.164 4 C 0.069 3.931 5 H 0.107 0.893 6 C 0.522 3.478 7 O -0.528 6.528 8 N -0.594 5.594 9 C 0.076 3.924 10 C 0.159 3.841 11 H 0.101 0.899 12 C 0.153 3.847 13 N -0.751 5.751 14 C -0.243 4.243 15 H 0.089 0.911 16 C 0.007 3.993 17 N -0.934 5.934 18 Si 0.883 3.117 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.275 1.275 22 C -0.157 4.157 23 C -0.179 4.179 24 C -0.169 4.169 25 N -0.521 5.521 26 C -0.002 4.002 27 C -0.008 4.008 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.029 0.971 39 H 0.037 0.963 40 H 0.364 0.636 41 H 0.259 0.741 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.038 0.962 48 H 0.060 0.940 49 H 0.087 0.913 50 H 0.104 0.896 51 H 0.041 0.959 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.125 13.432 -11.102 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.154 4.154 3 C -0.220 4.220 4 C -0.043 4.043 5 H 0.125 0.875 6 C 0.310 3.690 7 O -0.404 6.404 8 N -0.326 5.326 9 C -0.067 4.067 10 C 0.056 3.944 11 H 0.119 0.881 12 C 0.024 3.976 13 N -0.397 5.397 14 C -0.373 4.373 15 H 0.107 0.893 16 C -0.189 4.189 17 N -0.582 5.582 18 Si 0.713 3.287 19 H -0.211 1.211 20 H -0.219 1.219 21 H -0.201 1.201 22 C -0.177 4.177 23 C -0.216 4.216 24 C -0.207 4.207 25 N -0.244 5.244 26 C -0.150 4.150 27 C -0.155 4.155 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.197 0.803 41 H 0.069 0.931 42 H 0.123 0.877 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.057 0.943 48 H 0.078 0.922 49 H 0.106 0.894 50 H 0.122 0.878 51 H 0.060 0.940 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.013 12.878 -10.247 22.276 hybrid contribution -0.627 1.146 0.138 1.313 sum -15.639 14.024 -10.109 23.312 Atomic orbital electron populations 1.22365 0.95100 1.02043 1.02174 1.22031 0.96774 0.97351 0.99217 1.22662 1.01670 0.95814 1.01861 1.21933 1.01079 0.91299 0.89953 0.87501 1.20365 0.79378 0.88521 0.80725 1.90616 1.37870 1.73242 1.38705 1.47634 1.49937 1.09525 1.25516 1.21911 0.94336 0.99369 0.91115 1.20973 0.97239 0.79850 0.96357 0.88124 1.20899 0.89777 0.96123 0.90762 1.42649 1.23461 1.48707 1.24918 1.19019 0.94781 1.17058 1.06432 0.89289 1.24633 0.96642 0.99505 0.98134 1.69705 1.14532 1.45331 1.28667 0.86574 0.77702 0.82407 0.81984 1.21134 1.21864 1.20127 1.22499 0.96747 0.99165 0.99255 1.23007 0.91770 1.04002 1.02813 1.22939 1.03156 0.92016 1.02549 1.62165 1.21387 1.05588 1.35276 1.23507 1.01669 0.88140 1.01652 1.23444 0.87721 1.02000 1.02331 0.91009 0.92685 0.92147 0.88930 0.91687 0.93016 0.90541 0.92854 0.91110 0.89948 0.95300 0.94499 0.80309 0.93129 0.87718 0.88756 0.89241 0.88755 0.88209 0.94350 0.92163 0.89426 0.87790 0.94014 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 7.16 37.16 0.27 -1.35 16 2 C -0.13 -1.37 2.29 -90.62 -0.21 -1.58 16 3 C -0.16 -1.35 7.62 37.16 0.28 -1.07 16 4 C 0.07 0.97 1.81 -68.86 -0.12 0.84 16 5 H 0.11 1.58 7.20 -51.93 -0.37 1.20 16 6 C 0.52 8.73 5.54 -10.98 -0.06 8.67 16 7 O -0.53 -10.36 11.94 5.56 0.07 -10.29 16 8 N -0.59 -9.08 2.24 -173.93 -0.39 -9.47 16 9 C 0.08 0.93 7.78 59.85 0.47 1.39 16 10 C 0.16 2.55 2.42 -67.93 -0.16 2.39 16 11 H 0.10 1.85 6.66 -51.93 -0.35 1.51 16 12 C 0.15 2.94 5.27 -4.04 -0.02 2.92 16 13 N -0.75 -18.41 5.24 -59.91 -0.31 -18.72 16 14 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 15 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 16 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 17 N -0.93 -29.95 13.97 55.49 0.78 -29.18 16 18 Si 0.88 23.78 27.73 -169.99 -4.71 19.06 16 19 H -0.28 -7.82 7.11 56.52 0.40 -7.42 16 20 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 21 H -0.28 -7.20 6.52 56.52 0.37 -6.84 16 22 C -0.16 -1.95 5.21 -90.61 -0.47 -2.43 16 23 C -0.18 -2.02 10.18 -26.69 -0.27 -2.29 16 24 C -0.17 -1.92 9.80 -26.69 -0.26 -2.18 16 25 N -0.52 -7.51 5.11 -244.58 -1.25 -8.76 16 26 C 0.00 -0.03 7.50 60.07 0.45 0.42 16 27 C -0.01 -0.12 7.20 60.06 0.43 0.31 16 28 H 0.07 0.74 3.68 -51.93 -0.19 0.54 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.71 6.58 -51.92 -0.34 0.37 16 31 H 0.09 0.89 4.43 -51.93 -0.23 0.66 16 32 H 0.06 0.55 6.55 -51.93 -0.34 0.21 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.59 4.64 -51.93 -0.24 0.35 16 35 H 0.05 0.50 6.75 -51.93 -0.35 0.15 16 36 H 0.07 0.83 6.08 -51.93 -0.32 0.51 16 37 H 0.08 1.08 6.53 -51.93 -0.34 0.74 16 38 H 0.03 0.55 6.88 -51.93 -0.36 0.19 16 39 H 0.04 0.73 7.48 -51.92 -0.39 0.34 16 40 H 0.36 9.20 4.93 -40.82 -0.20 9.00 16 41 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 42 H 0.10 1.18 7.43 -51.93 -0.39 0.79 16 43 H 0.09 1.16 8.05 -51.93 -0.42 0.74 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.10 1.22 7.66 -51.93 -0.40 0.82 16 47 H 0.04 0.36 4.56 -51.93 -0.24 0.13 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.09 0.84 4.37 -51.93 -0.23 0.61 16 50 H 0.10 1.83 5.81 -51.97 -0.30 1.52 16 51 H 0.04 0.52 7.82 -51.93 -0.41 0.12 16 52 H 0.06 0.74 3.29 -51.93 -0.17 0.57 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -33.90 367.20 -8.50 -42.40 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -8.26 Total: 10.42 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 0.06 Total: -1.01 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -1.18 Total: -66.12 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -4.71 Total: 19.06 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.90 -8.50 -42.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725468558.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.348 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds