Wall clock time and date at job start Tue Mar 31 2020 10:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46829 * 2 1 4 4 C 1.53000 * 109.47316 * 120.00319 * 2 1 3 5 5 H 1.08995 * 109.46813 * 187.54421 * 4 2 1 6 6 C 1.50703 * 109.46999 * 67.54376 * 4 2 1 7 7 O 1.21280 * 120.00113 * 239.99910 * 6 4 2 8 8 N 1.34776 * 119.99673 * 60.00320 * 6 4 2 9 9 C 1.46498 * 120.00593 * 359.97438 * 8 6 4 10 10 C 1.46506 * 119.99597 * 179.97438 * 8 6 4 11 11 H 1.08996 * 109.46945 * 0.02562 * 10 8 6 12 12 C 1.52997 * 109.47111 * 239.99881 * 10 8 6 13 13 N 1.46499 * 109.46992 * 55.00682 * 12 10 8 14 14 C 1.36934 * 119.99844 * 179.71895 * 13 12 10 15 15 H 1.08002 * 120.00380 * 0.02562 * 14 13 12 16 16 C 1.38816 * 120.00065 * 179.97438 * 14 13 12 17 17 N 1.31616 * 120.00183 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99853 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47229 * 89.99540 * 18 16 14 20 20 H 1.48501 * 109.47011 * 209.99905 * 18 16 14 21 21 H 1.48503 * 109.47008 * 329.99305 * 18 16 14 22 22 C 1.53003 * 109.46697 * 120.00197 * 10 8 6 23 23 C 1.53004 * 117.49734 * 248.74782 * 22 10 8 24 24 C 1.53003 * 117.49867 * 180.08820 * 22 10 8 25 25 N 1.46899 * 109.46912 * 307.54866 * 4 2 1 26 26 C 1.46906 * 110.99923 * 316.31391 * 25 4 2 27 27 C 1.46897 * 111.00330 * 80.26684 * 25 4 2 28 28 H 1.08991 * 109.47204 * 299.76984 * 1 2 3 29 29 H 1.08997 * 109.47376 * 59.77247 * 1 2 3 30 30 H 1.09008 * 109.46744 * 179.76872 * 1 2 3 31 31 H 1.09002 * 109.47238 * 240.00130 * 2 1 3 32 32 H 1.09004 * 109.47025 * 152.94797 * 3 2 1 33 33 H 1.08999 * 109.47252 * 272.94541 * 3 2 1 34 34 H 1.09000 * 109.47197 * 32.94827 * 3 2 1 35 35 H 1.09002 * 109.47095 * 270.00353 * 9 8 6 36 36 H 1.09000 * 109.46885 * 29.99732 * 9 8 6 37 37 H 1.08991 * 109.47593 * 149.99667 * 9 8 6 38 38 H 1.08993 * 109.47202 * 294.99891 * 12 10 8 39 39 H 1.09009 * 109.46780 * 175.00333 * 12 10 8 40 40 H 0.97002 * 120.00398 * 359.97438 * 13 12 10 41 41 H 0.97000 * 120.00244 * 180.02562 * 17 16 14 42 42 H 1.09005 * 115.55103 * 34.41741 * 22 10 8 43 43 H 1.08999 * 117.49839 * 0.02562 * 23 22 10 44 44 H 1.09001 * 117.49868 * 145.01932 * 23 22 10 45 45 H 1.08991 * 117.49780 * 214.98016 * 24 22 10 46 46 H 1.08998 * 117.49320 * 359.97438 * 24 22 10 47 47 H 1.09002 * 109.47015 * 85.78979 * 26 25 4 48 48 H 1.08997 * 109.47459 * 205.79000 * 26 25 4 49 49 H 1.09003 * 109.46936 * 325.78874 * 26 25 4 50 50 H 1.09004 * 109.46689 * 83.65470 * 27 25 4 51 51 H 1.08999 * 109.47267 * 203.64861 * 27 25 4 52 52 H 1.08993 * 109.47211 * 323.65792 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1217 -0.6059 1.3191 6 6 1.6959 -2.1857 1.1594 7 8 0.9929 -2.6965 2.0055 8 7 2.1693 -2.9278 0.1388 9 6 3.0180 -2.3109 -0.8836 10 6 1.8351 -4.3516 0.0518 11 1 1.1997 -4.6277 0.8933 12 6 3.1206 -5.1804 0.0891 13 7 3.8907 -4.8334 1.2860 14 6 5.0843 -5.4560 1.5366 15 1 5.4582 -6.2027 0.8516 16 6 5.8144 -5.1268 2.6704 17 7 6.9618 -5.7249 2.9110 18 14 5.1682 -3.8349 3.8548 19 1 4.3267 -4.4884 4.8893 20 1 6.3105 -3.1467 4.5081 21 1 4.3537 -2.8424 3.1086 22 6 1.0919 -4.6218 -1.2581 23 6 -0.3879 -4.9997 -1.1657 24 6 0.6516 -6.0604 -1.5367 25 7 1.4075 -0.1419 2.4417 26 6 1.3873 1.3251 2.3667 27 6 0.0532 -0.6780 2.6323 28 1 -0.3633 0.5102 0.8920 29 1 -0.3634 0.5173 -0.8879 30 1 -0.3633 -1.0278 -0.0041 31 1 1.8934 -0.5138 -0.8900 32 1 3.0240 1.4800 0.4674 33 1 2.1113 1.8027 -1.0263 34 1 1.3480 2.0725 0.5589 35 1 2.3940 -1.9281 -1.6912 36 1 3.5824 -1.4904 -0.4405 37 1 3.7090 -3.0549 -1.2797 38 1 3.7151 -4.9690 -0.7996 39 1 2.8687 -6.2407 0.1139 40 1 3.5534 -4.1652 1.9030 41 1 7.4718 -5.4951 3.7034 42 1 1.4049 -4.0174 -2.1095 43 1 -0.8320 -5.0553 -0.1719 44 1 -1.0484 -4.6441 -1.9566 45 1 0.6746 -6.4023 -2.5714 46 1 0.8918 -6.8143 -0.7870 47 1 0.5046 1.6485 1.8150 48 1 1.3583 1.7401 3.3742 49 1 2.2840 1.6751 1.8553 50 1 0.1106 -1.6322 3.1562 51 1 -0.5362 0.0248 3.2212 52 1 -0.4196 -0.8245 1.6613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725468558.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:45 Heat of formation + Delta-G solvation = 61.165772 kcal Electronic energy + Delta-G solvation = -29268.219465 eV Core-core repulsion = 25692.536548 eV Total energy + Delta-G solvation = -3575.682917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.24789 -39.93134 -38.32929 -36.77270 -36.06756 -33.95528 -33.38227 -30.97883 -30.11661 -29.18701 -27.93932 -26.57305 -25.88247 -23.85013 -23.17588 -22.81918 -21.93468 -21.12234 -20.40865 -19.57315 -18.24674 -17.69474 -17.36051 -16.67938 -16.52361 -15.97596 -15.91729 -15.68032 -15.30921 -15.09994 -14.77942 -14.51152 -14.45751 -14.31013 -13.99658 -13.92994 -13.65977 -13.58249 -13.47739 -13.09992 -13.01666 -12.87579 -12.64005 -12.46538 -12.39164 -12.25250 -12.09607 -12.02793 -11.91354 -11.85577 -11.66473 -11.33256 -11.21279 -11.06668 -10.94045 -10.26780 -9.59694 -9.33132 -8.94377 -8.08535 -5.39173 1.28308 1.33664 1.38848 1.59196 1.90139 2.39866 2.86442 3.04985 3.23971 3.40120 3.52113 3.68984 3.82162 3.92708 3.96497 4.05924 4.09646 4.21918 4.25004 4.37344 4.39519 4.42149 4.48579 4.52253 4.54908 4.61835 4.69960 4.71065 4.76807 4.79691 4.82783 4.84511 4.92248 4.98011 5.02465 5.06972 5.07481 5.16870 5.20031 5.27069 5.29292 5.33720 5.39433 5.62793 5.72449 5.99837 6.16251 6.17593 6.43446 7.02279 7.21582 7.79943 7.97404 9.12872 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.010568 B = 0.006511 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.780925 B = 4299.483785 C = 5968.354836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.161 4.161 4 C 0.071 3.929 5 H 0.098 0.902 6 C 0.510 3.490 7 O -0.567 6.567 8 N -0.595 5.595 9 C 0.069 3.931 10 C 0.169 3.831 11 H 0.070 0.930 12 C 0.150 3.850 13 N -0.755 5.755 14 C -0.224 4.224 15 H 0.067 0.933 16 C -0.051 4.051 17 N -0.977 5.977 18 Si 0.944 3.056 19 H -0.294 1.294 20 H -0.288 1.288 21 H -0.268 1.268 22 C -0.160 4.160 23 C -0.169 4.169 24 C -0.166 4.166 25 N -0.548 5.548 26 C -0.002 4.002 27 C 0.001 3.999 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.034 0.966 40 H 0.360 0.640 41 H 0.258 0.742 42 H 0.127 0.873 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.118 0.882 46 H 0.084 0.916 47 H 0.056 0.944 48 H 0.059 0.941 49 H 0.102 0.898 50 H 0.065 0.935 51 H 0.055 0.945 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.504 15.882 -13.495 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C -0.217 4.217 4 C -0.041 4.041 5 H 0.116 0.884 6 C 0.299 3.701 7 O -0.446 6.446 8 N -0.326 5.326 9 C -0.072 4.072 10 C 0.065 3.935 11 H 0.089 0.911 12 C 0.023 3.977 13 N -0.400 5.400 14 C -0.355 4.355 15 H 0.085 0.915 16 C -0.243 4.243 17 N -0.628 5.628 18 Si 0.773 3.227 19 H -0.222 1.222 20 H -0.214 1.214 21 H -0.193 1.193 22 C -0.180 4.180 23 C -0.206 4.206 24 C -0.203 4.203 25 N -0.273 5.273 26 C -0.148 4.148 27 C -0.145 4.145 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.193 0.807 41 H 0.067 0.933 42 H 0.145 0.855 43 H 0.096 0.904 44 H 0.132 0.868 45 H 0.137 0.863 46 H 0.103 0.897 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.120 0.880 50 H 0.083 0.917 51 H 0.074 0.926 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.412 15.347 -12.694 25.808 hybrid contribution -0.222 0.292 0.834 0.911 sum -16.633 15.640 -11.860 25.728 Atomic orbital electron populations 1.22285 0.94855 1.00977 1.03068 1.21995 0.96824 0.98302 0.97367 1.22619 1.01593 0.94255 1.03220 1.21931 1.00529 0.89774 0.91861 0.88417 1.21017 0.78944 0.89811 0.80295 1.90627 1.39681 1.74221 1.40078 1.47759 1.49934 1.09035 1.25919 1.22155 0.94588 0.99192 0.91309 1.20689 0.95115 0.80123 0.97532 0.91135 1.21104 0.90991 0.96659 0.88948 1.42710 1.22592 1.48194 1.26534 1.19053 0.95633 1.15612 1.05245 0.91517 1.25234 0.97186 1.01877 1.00028 1.69829 1.16033 1.47360 1.29530 0.85599 0.76938 0.80339 0.79798 1.22150 1.21445 1.19331 1.22402 0.97318 1.00490 0.97748 1.23022 0.91340 1.03489 1.02789 1.23015 1.02664 0.91152 1.03489 1.62078 1.21300 1.07699 1.36215 1.23612 1.03176 0.85844 1.02211 1.23240 0.88307 1.00498 1.02484 0.91320 0.90488 0.94189 0.87972 0.91833 0.91183 0.89846 0.89107 0.90552 0.90763 0.93948 0.94811 0.80742 0.93289 0.85496 0.90419 0.86792 0.86342 0.89743 0.92585 0.92269 0.88031 0.91674 0.92634 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 7.16 71.98 0.52 -2.16 16 2 C -0.12 -2.18 2.29 -10.79 -0.02 -2.20 16 3 C -0.16 -2.04 7.62 71.98 0.55 -1.49 16 4 C 0.07 1.88 1.81 44.17 0.08 1.96 16 5 H 0.10 2.76 7.20 -2.39 -0.02 2.74 16 6 C 0.51 16.89 5.54 87.66 0.49 17.38 16 7 O -0.57 -22.91 11.94 -3.03 -0.04 -22.94 16 8 N -0.59 -17.54 2.24 -822.59 -1.85 -19.39 16 9 C 0.07 1.52 7.78 127.77 0.99 2.52 16 10 C 0.17 5.36 2.42 44.99 0.11 5.47 16 11 H 0.07 2.68 6.66 -2.39 -0.02 2.66 16 12 C 0.15 5.74 5.27 86.38 0.46 6.20 16 13 N -0.76 -37.24 5.24 -343.45 -1.80 -39.04 16 14 C -0.22 -13.15 10.47 84.03 0.88 -12.27 16 15 H 0.07 4.17 8.06 -2.91 -0.02 4.14 16 16 C -0.05 -3.14 5.50 84.86 0.47 -2.67 16 17 N -0.98 -63.86 13.97 21.65 0.30 -63.56 16 18 Si 0.94 50.34 27.73 68.60 1.90 52.24 16 19 H -0.29 -16.04 7.11 99.48 0.71 -15.34 16 20 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 21 H -0.27 -13.76 6.52 99.48 0.65 -13.11 16 22 C -0.16 -3.65 5.21 -10.79 -0.06 -3.71 16 23 C -0.17 -3.49 10.18 30.62 0.31 -3.18 16 24 C -0.17 -3.44 9.80 30.62 0.30 -3.14 16 25 N -0.55 -15.29 5.11 -927.73 -4.74 -20.03 16 26 C 0.00 -0.04 7.50 127.69 0.96 0.92 16 27 C 0.00 0.04 7.20 127.69 0.92 0.96 16 28 H 0.07 1.23 3.68 -2.39 -0.01 1.22 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 0.86 6.58 -2.38 -0.02 0.85 16 31 H 0.10 1.57 4.43 -2.39 -0.01 1.56 16 32 H 0.06 0.86 6.55 -2.38 -0.02 0.84 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.96 4.64 -2.39 -0.01 0.95 16 35 H 0.09 1.33 6.75 -2.39 -0.02 1.31 16 36 H 0.08 1.61 6.08 -2.39 -0.01 1.59 16 37 H 0.07 1.77 6.53 -2.39 -0.02 1.75 16 38 H 0.04 1.55 6.88 -2.39 -0.02 1.53 16 39 H 0.03 1.33 7.48 -2.38 -0.02 1.32 16 40 H 0.36 18.34 4.93 -92.71 -0.46 17.88 16 41 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 42 H 0.13 2.37 7.43 -2.38 -0.02 2.35 16 43 H 0.08 1.88 8.05 -2.39 -0.02 1.86 16 44 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.08 2.02 7.66 -2.39 -0.02 2.00 16 47 H 0.06 0.88 4.56 -2.39 -0.01 0.87 16 48 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.10 1.67 4.37 -2.39 -0.01 1.65 16 50 H 0.06 2.39 5.81 -3.09 -0.02 2.37 16 51 H 0.05 1.36 7.82 -2.39 -0.02 1.34 16 52 H 0.06 1.67 3.29 -2.39 -0.01 1.66 16 Total: -1.00 -75.81 367.20 1.14 -74.67 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: 0.42 Total: 33.47 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 6.94 Total: 4.58 kcal Atomic # 7 Polarization: -133.93 SS G_CDS: -8.09 Total: -142.02 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.04 Total: -22.94 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 1.90 Total: 52.24 kcal Total: -75.81 1.14 -74.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725468558.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.836 kcal (2) G-P(sol) polarization free energy of solvation -75.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds