Wall clock time and date at job start Tue Mar 31 2020 10:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47453 * 2 1 4 4 N 1.46894 * 109.47140 * 120.00410 * 2 1 3 5 5 C 1.46908 * 111.00158 * 183.95237 * 4 2 1 6 6 C 1.46902 * 111.00264 * 59.99987 * 4 2 1 7 7 C 1.50703 * 109.47304 * 190.00061 * 6 4 2 8 8 O 1.21279 * 119.99543 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99872 * 179.97438 * 7 6 4 10 10 C 1.46916 * 120.63011 * 0.02562 * 9 7 6 11 11 C 1.53198 * 108.77458 * 233.62826 * 10 9 7 12 12 C 1.53045 * 109.30845 * 305.36616 * 11 10 9 13 13 C 1.53039 * 109.53978 * 61.36453 * 12 11 10 14 14 H 1.09002 * 109.49727 * 58.61946 * 13 12 11 15 15 C 1.53000 * 109.49536 * 178.67984 * 13 12 11 16 16 C 1.53004 * 109.46658 * 185.00114 * 15 13 12 17 17 N 1.46507 * 109.46777 * 180.02562 * 16 15 13 18 18 C 1.36935 * 119.99742 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00083 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99986 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99464 * 0.27719 * 20 18 17 22 22 Si 1.86800 * 119.99902 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47364 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46883 * 120.00276 * 22 20 18 25 25 H 1.48497 * 109.46870 * 240.00086 * 22 20 18 26 26 C 1.46927 * 120.62870 * 180.02562 * 9 7 6 27 27 H 1.08998 * 109.47068 * 300.00224 * 1 2 3 28 28 H 1.09009 * 109.47415 * 59.99697 * 1 2 3 29 29 H 1.08996 * 109.47757 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46714 * 240.00321 * 2 1 3 31 31 H 1.08994 * 109.47249 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46894 * 299.99969 * 3 2 1 33 33 H 1.08998 * 109.46723 * 60.00136 * 3 2 1 34 34 H 1.09000 * 109.46796 * 296.04567 * 5 4 2 35 35 H 1.08996 * 109.46866 * 56.04186 * 5 4 2 36 36 H 1.09001 * 109.46899 * 176.04633 * 5 4 2 37 37 H 1.08992 * 109.47237 * 69.99651 * 6 4 2 38 38 H 1.09005 * 109.46684 * 309.99925 * 6 4 2 39 39 H 1.08996 * 109.58921 * 113.84297 * 10 9 7 40 40 H 1.08998 * 109.71235 * 353.47935 * 10 9 7 41 41 H 1.09000 * 109.49989 * 185.41407 * 11 10 9 42 42 H 1.08992 * 109.50042 * 65.31394 * 11 10 9 43 43 H 1.09001 * 109.46270 * 301.33898 * 12 11 10 44 44 H 1.08999 * 109.44641 * 181.37766 * 12 11 10 45 45 H 1.09000 * 109.46771 * 65.00437 * 15 13 12 46 46 H 1.08997 * 109.47271 * 304.99717 * 15 13 12 47 47 H 1.08992 * 109.47421 * 60.00343 * 16 15 13 48 48 H 1.08997 * 109.46955 * 299.99796 * 16 15 13 49 49 H 0.96999 * 120.00180 * 359.97438 * 17 16 15 50 50 H 0.97001 * 120.00638 * 359.71685 * 21 20 18 51 51 H 1.09000 * 109.58564 * 6.57961 * 26 9 7 52 52 H 1.08999 * 109.58492 * 246.16163 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1993 5 6 3.4851 -0.6308 1.2815 6 6 1.5486 -2.0836 1.2332 7 6 1.8579 -2.6861 2.5795 8 8 2.4162 -2.0221 3.4271 9 7 1.5141 -3.9626 2.8416 10 6 0.8379 -4.7795 1.8248 11 6 -0.4461 -5.3562 2.4296 12 6 -0.1048 -6.1104 3.7168 13 6 0.5134 -5.1427 4.7284 14 1 -0.1878 -4.3337 4.9335 15 6 0.8239 -5.8905 6.0266 16 6 1.3253 -4.8993 7.0787 17 7 1.6232 -5.6155 8.3216 18 6 2.0888 -4.9302 9.4119 19 1 2.2368 -3.8619 9.3555 20 6 2.3706 -5.6087 10.5897 21 7 2.1954 -6.9115 10.6567 22 14 3.0065 -4.6740 12.0768 23 1 3.1214 -3.2316 11.7429 24 1 2.0623 -4.8456 13.2102 25 1 4.3406 -5.2018 12.4597 26 6 1.8085 -4.5637 4.1495 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9191 -1.1675 0.4379 35 1 3.8069 0.4102 1.2543 36 1 3.8163 -1.0895 2.2132 37 1 2.0517 -2.6566 0.4545 38 1 0.4721 -2.1069 1.0634 39 1 1.4933 -5.5933 1.5147 40 1 0.5896 -4.1614 0.9620 41 1 -0.9077 -6.0410 1.7182 42 1 -1.1380 -4.5450 2.6558 43 1 0.6062 -6.9060 3.4940 44 1 -1.0135 -6.5424 4.1360 45 1 1.5921 -6.6407 5.8388 46 1 -0.0802 -6.3792 6.3895 47 1 0.5571 -4.1492 7.2665 48 1 2.2294 -4.4106 6.7158 49 1 1.4899 -6.5749 8.3724 50 1 1.8654 -7.3969 9.8844 51 1 2.2007 -3.8010 4.8222 52 1 2.5430 -5.3599 4.0288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753562561.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:01 Heat of formation + Delta-G solvation = -25.816656 kcal Electronic energy + Delta-G solvation = -26840.237522 eV Core-core repulsion = 23260.782764 eV Total energy + Delta-G solvation = -3579.454758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.51614 -38.66104 -37.34538 -35.48457 -33.71077 -32.42754 -32.21361 -30.61465 -29.45321 -27.51857 -26.77654 -25.43787 -24.42305 -23.83564 -22.65607 -21.06770 -20.52170 -20.09423 -19.05780 -17.51128 -17.13218 -16.54186 -16.13218 -15.43148 -15.22461 -14.95664 -14.79513 -14.62993 -14.36349 -13.81791 -13.63967 -13.54337 -13.40964 -13.20313 -13.16361 -12.94139 -12.74887 -12.57354 -12.22944 -12.15136 -12.12490 -11.61115 -11.44674 -11.38317 -11.28264 -11.13868 -10.97249 -10.78922 -10.68943 -10.46389 -10.39123 -10.18662 -9.96601 -9.72642 -9.09088 -8.79202 -8.71068 -8.54765 -6.91755 -6.03811 -3.02332 2.56512 2.75722 3.57440 3.61043 3.64066 3.74299 4.30437 4.48316 4.51269 4.59738 4.68656 4.71460 4.78370 4.86692 4.90477 4.92889 4.96343 5.09493 5.18721 5.26359 5.28615 5.32640 5.39819 5.44945 5.47165 5.53834 5.58191 5.58886 5.62578 5.67550 5.75926 5.79694 5.85945 5.89668 5.94656 5.99417 6.02395 6.15644 6.19185 6.29655 6.37404 6.48161 6.67431 6.80204 6.86539 6.89394 7.32745 7.90982 8.16413 8.83319 9.31486 10.17766 10.32974 11.45370 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.015690 B = 0.002718 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.158258 B =10298.070358 C =11648.763363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 C -0.147 4.147 4 N -0.520 5.520 5 C 0.014 3.986 6 C 0.034 3.966 7 C 0.513 3.487 8 O -0.517 6.517 9 N -0.614 5.614 10 C 0.107 3.893 11 C -0.135 4.135 12 C -0.115 4.115 13 C -0.095 4.095 14 H 0.074 0.926 15 C -0.119 4.119 16 C 0.156 3.844 17 N -0.746 5.746 18 C -0.328 4.328 19 H 0.065 0.935 20 C -0.049 4.049 21 N -0.948 5.948 22 Si 1.086 2.914 23 H -0.294 1.294 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.116 3.884 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.039 0.961 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.018 0.982 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.018 0.982 48 H 0.022 0.978 49 H 0.366 0.634 50 H 0.254 0.746 51 H 0.099 0.901 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 8.391 -29.326 30.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 C -0.205 4.205 4 N -0.245 5.245 5 C -0.133 4.133 6 C -0.097 4.097 7 C 0.300 3.700 8 O -0.391 6.391 9 N -0.349 5.349 10 C -0.016 4.016 11 C -0.173 4.173 12 C -0.153 4.153 13 C -0.115 4.115 14 H 0.092 0.908 15 C -0.158 4.158 16 C 0.029 3.971 17 N -0.391 5.391 18 C -0.459 4.459 19 H 0.083 0.917 20 C -0.246 4.246 21 N -0.594 5.594 22 Si 0.917 3.083 23 H -0.221 1.221 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.006 4.006 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.036 0.964 48 H 0.040 0.960 49 H 0.199 0.801 50 H 0.066 0.934 51 H 0.118 0.882 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.098 9.136 -26.899 28.703 hybrid contribution -0.325 -0.694 -2.386 2.507 sum -4.423 8.442 -29.286 30.798 Atomic orbital electron populations 1.21933 0.94266 1.01890 1.02571 1.21661 0.95791 0.95336 0.90426 1.21909 1.01247 0.94944 1.02382 1.61712 1.11509 1.12450 1.38826 1.22641 0.86205 1.02514 1.01961 1.22084 1.02625 0.90126 0.94855 1.20469 0.78907 0.80978 0.89614 1.90701 1.40965 1.59657 1.47814 1.48169 1.59573 1.11885 1.15302 1.21729 0.94094 0.95217 0.90590 1.21924 0.96989 1.00412 0.97960 1.21589 1.01114 0.97880 0.94690 1.21450 0.96957 0.98190 0.94880 0.90759 1.21746 1.01411 0.98758 0.93853 1.20645 0.96848 0.93521 0.86079 1.42399 1.80485 1.06708 1.09554 1.20136 1.40213 0.93272 0.92274 0.91688 1.25784 1.01295 0.97267 1.00210 1.70814 1.49354 1.06772 1.32475 0.83146 0.76310 0.73690 0.75173 1.22068 1.22046 1.22019 1.21788 0.96727 0.98576 0.83487 0.91403 0.92032 0.92702 0.94347 0.92312 0.92161 0.91458 0.96368 0.90869 0.89201 0.92279 0.87628 0.91291 0.90249 0.90762 0.91411 0.91709 0.91447 0.91929 0.91693 0.96422 0.96044 0.80142 0.93435 0.88238 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.99 37.15 0.33 -0.66 16 2 C 0.08 0.59 2.67 -67.72 -0.18 0.41 16 3 C -0.15 -1.05 8.84 37.16 0.33 -0.72 16 4 N -0.52 -5.40 4.37 -236.33 -1.03 -6.43 16 5 C 0.01 0.15 8.84 60.07 0.53 0.68 16 6 C 0.03 0.32 3.61 -4.97 -0.02 0.30 16 7 C 0.51 6.67 7.42 -10.98 -0.08 6.59 16 8 O -0.52 -8.97 13.72 5.56 0.08 -8.90 16 9 N -0.61 -7.08 2.97 -172.76 -0.51 -7.60 16 10 C 0.11 0.82 6.34 -3.71 -0.02 0.80 16 11 C -0.13 -1.04 6.08 -26.61 -0.16 -1.20 16 12 C -0.12 -1.15 5.17 -26.69 -0.14 -1.29 16 13 C -0.09 -1.25 2.34 -90.49 -0.21 -1.46 16 14 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 15 C -0.12 -1.95 4.80 -26.73 -0.13 -2.08 16 16 C 0.16 3.38 6.02 -4.04 -0.02 3.35 16 17 N -0.75 -19.97 5.60 -59.91 -0.34 -20.30 16 18 C -0.33 -9.82 9.99 -15.06 -0.15 -9.97 16 19 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 20 C -0.05 -1.48 5.50 -17.43 -0.10 -1.57 16 21 N -0.95 -30.35 13.70 55.49 0.76 -29.59 16 22 Si 1.09 27.20 29.92 -169.99 -5.09 22.12 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 C 0.12 1.59 5.33 -3.70 -0.02 1.57 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.05 0.33 6.20 -51.93 -0.32 0.01 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.41 6.26 -51.93 -0.33 0.09 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.07 0.69 6.01 -51.93 -0.31 0.38 16 36 H 0.09 1.19 5.88 -51.93 -0.31 0.89 16 37 H 0.06 0.46 7.92 -51.93 -0.41 0.04 16 38 H 0.11 0.82 5.38 -51.93 -0.28 0.54 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.44 5.95 -51.93 -0.31 0.13 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.02 0.48 6.70 -51.93 -0.35 0.13 16 49 H 0.37 9.84 6.50 -40.82 -0.27 9.58 16 50 H 0.25 8.00 6.77 -40.82 -0.28 7.72 16 51 H 0.10 1.69 5.73 -51.93 -0.30 1.39 16 52 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -35.58 390.94 -9.70 -45.28 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -9.42 Total: 4.77 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -0.04 Total: -5.24 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -1.12 Total: -63.92 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.08 Total: -8.90 kcal Atomic # 14 Polarization: 27.20 SS G_CDS: -5.09 Total: 22.12 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.58 -9.70 -45.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753562561.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.465 kcal (2) G-P(sol) polarization free energy of solvation -35.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds