Wall clock time and date at job start Tue Mar 31 2020 10:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47453 * 2 1 4 4 N 1.46894 * 109.47140 * 120.00410 * 2 1 3 5 5 C 1.46908 * 111.00158 * 183.95237 * 4 2 1 6 6 C 1.46902 * 111.00264 * 59.99987 * 4 2 1 7 7 C 1.50703 * 109.47304 * 190.00061 * 6 4 2 8 8 O 1.21279 * 119.99543 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99872 * 179.97438 * 7 6 4 10 10 C 1.46916 * 120.63011 * 0.02562 * 9 7 6 11 11 C 1.53198 * 108.77458 * 233.62826 * 10 9 7 12 12 C 1.53045 * 109.30845 * 305.36616 * 11 10 9 13 13 C 1.53039 * 109.53978 * 61.36453 * 12 11 10 14 14 H 1.09002 * 109.49727 * 58.61946 * 13 12 11 15 15 C 1.53000 * 109.49536 * 178.67984 * 13 12 11 16 16 C 1.53004 * 109.46658 * 185.00114 * 15 13 12 17 17 N 1.46507 * 109.46777 * 180.02562 * 16 15 13 18 18 C 1.36935 * 119.99742 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00083 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99986 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99464 * 0.27719 * 20 18 17 22 22 Si 1.86800 * 119.99902 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47364 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46883 * 120.00276 * 22 20 18 25 25 H 1.48497 * 109.46870 * 240.00086 * 22 20 18 26 26 C 1.46927 * 120.62870 * 180.02562 * 9 7 6 27 27 H 1.08998 * 109.47068 * 300.00224 * 1 2 3 28 28 H 1.09009 * 109.47415 * 59.99697 * 1 2 3 29 29 H 1.08996 * 109.47757 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46714 * 240.00321 * 2 1 3 31 31 H 1.08994 * 109.47249 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46894 * 299.99969 * 3 2 1 33 33 H 1.08998 * 109.46723 * 60.00136 * 3 2 1 34 34 H 1.09000 * 109.46796 * 296.04567 * 5 4 2 35 35 H 1.08996 * 109.46866 * 56.04186 * 5 4 2 36 36 H 1.09001 * 109.46899 * 176.04633 * 5 4 2 37 37 H 1.08992 * 109.47237 * 69.99651 * 6 4 2 38 38 H 1.09005 * 109.46684 * 309.99925 * 6 4 2 39 39 H 1.08996 * 109.58921 * 113.84297 * 10 9 7 40 40 H 1.08998 * 109.71235 * 353.47935 * 10 9 7 41 41 H 1.09000 * 109.49989 * 185.41407 * 11 10 9 42 42 H 1.08992 * 109.50042 * 65.31394 * 11 10 9 43 43 H 1.09001 * 109.46270 * 301.33898 * 12 11 10 44 44 H 1.08999 * 109.44641 * 181.37766 * 12 11 10 45 45 H 1.09000 * 109.46771 * 65.00437 * 15 13 12 46 46 H 1.08997 * 109.47271 * 304.99717 * 15 13 12 47 47 H 1.08992 * 109.47421 * 60.00343 * 16 15 13 48 48 H 1.08997 * 109.46955 * 299.99796 * 16 15 13 49 49 H 0.96999 * 120.00180 * 359.97438 * 17 16 15 50 50 H 0.97001 * 120.00638 * 359.71685 * 21 20 18 51 51 H 1.09000 * 109.58564 * 6.57961 * 26 9 7 52 52 H 1.08999 * 109.58492 * 246.16163 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1993 5 6 3.4851 -0.6308 1.2815 6 6 1.5486 -2.0836 1.2332 7 6 1.8579 -2.6861 2.5795 8 8 2.4162 -2.0221 3.4271 9 7 1.5141 -3.9626 2.8416 10 6 0.8379 -4.7795 1.8248 11 6 -0.4461 -5.3562 2.4296 12 6 -0.1048 -6.1104 3.7168 13 6 0.5134 -5.1427 4.7284 14 1 -0.1878 -4.3337 4.9335 15 6 0.8239 -5.8905 6.0266 16 6 1.3253 -4.8993 7.0787 17 7 1.6232 -5.6155 8.3216 18 6 2.0888 -4.9302 9.4119 19 1 2.2368 -3.8619 9.3555 20 6 2.3706 -5.6087 10.5897 21 7 2.1954 -6.9115 10.6567 22 14 3.0065 -4.6740 12.0768 23 1 3.1214 -3.2316 11.7429 24 1 2.0623 -4.8456 13.2102 25 1 4.3406 -5.2018 12.4597 26 6 1.8085 -4.5637 4.1495 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9191 -1.1675 0.4379 35 1 3.8069 0.4102 1.2543 36 1 3.8163 -1.0895 2.2132 37 1 2.0517 -2.6566 0.4545 38 1 0.4721 -2.1069 1.0634 39 1 1.4933 -5.5933 1.5147 40 1 0.5896 -4.1614 0.9620 41 1 -0.9077 -6.0410 1.7182 42 1 -1.1380 -4.5450 2.6558 43 1 0.6062 -6.9060 3.4940 44 1 -1.0135 -6.5424 4.1360 45 1 1.5921 -6.6407 5.8388 46 1 -0.0802 -6.3792 6.3895 47 1 0.5571 -4.1492 7.2665 48 1 2.2294 -4.4106 6.7158 49 1 1.4899 -6.5749 8.3724 50 1 1.8654 -7.3969 9.8844 51 1 2.2007 -3.8010 4.8222 52 1 2.5430 -5.3599 4.0288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753562561.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:00 Heat of formation + Delta-G solvation = -50.235792 kcal Electronic energy + Delta-G solvation = -26841.296415 eV Core-core repulsion = 23260.782764 eV Total energy + Delta-G solvation = -3580.513651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44981 -39.51489 -38.31264 -37.21642 -35.22664 -33.43058 -33.08356 -32.21082 -30.30187 -28.86836 -27.61732 -26.23645 -25.80872 -25.06687 -24.21643 -22.32710 -21.49898 -20.91412 -19.93196 -19.41082 -18.32010 -17.36004 -17.05331 -16.80697 -16.34375 -16.02701 -15.92199 -15.77637 -15.39013 -15.31024 -15.03353 -14.85158 -14.58888 -14.23974 -14.02795 -13.86041 -13.51530 -13.32289 -13.17379 -12.92502 -12.87930 -12.79164 -12.72835 -12.58319 -12.38404 -12.28187 -11.99687 -11.97315 -11.90712 -11.80400 -11.69017 -11.54838 -11.48179 -11.13635 -10.96815 -10.72346 -9.65368 -9.26206 -9.17746 -8.47562 -5.40862 1.54410 1.60778 1.66316 1.79522 1.88348 2.66163 2.91443 3.32943 3.46465 3.56794 3.78058 3.84177 3.93002 3.94203 4.04379 4.07504 4.19339 4.23533 4.27168 4.32748 4.40832 4.42146 4.47506 4.53827 4.55308 4.61084 4.63142 4.79797 4.81071 4.83190 4.86018 4.90788 4.94101 4.98496 5.01761 5.09472 5.10908 5.15362 5.22901 5.29306 5.31029 5.40427 5.45652 5.50221 5.54056 5.95005 6.14028 6.44140 6.45091 7.03626 7.21316 7.93474 8.04612 9.05020 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.015690 B = 0.002718 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.158258 B =10298.070358 C =11648.763363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 C -0.147 4.147 4 N -0.545 5.545 5 C 0.021 3.979 6 C 0.043 3.957 7 C 0.503 3.497 8 O -0.574 6.574 9 N -0.612 5.612 10 C 0.100 3.900 11 C -0.128 4.128 12 C -0.112 4.112 13 C -0.084 4.084 14 H 0.060 0.940 15 C -0.105 4.105 16 C 0.156 3.844 17 N -0.758 5.758 18 C -0.341 4.341 19 H 0.058 0.942 20 C -0.102 4.102 21 N -0.971 5.971 22 Si 1.134 2.866 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.286 1.286 26 C 0.119 3.881 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.006 0.994 48 H 0.011 0.989 49 H 0.363 0.637 50 H 0.245 0.755 51 H 0.056 0.944 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 8.105 -32.260 33.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 C -0.204 4.204 4 N -0.271 5.271 5 C -0.127 4.127 6 C -0.088 4.088 7 C 0.292 3.708 8 O -0.452 6.452 9 N -0.345 5.345 10 C -0.021 4.021 11 C -0.166 4.166 12 C -0.149 4.149 13 C -0.104 4.104 14 H 0.079 0.921 15 C -0.143 4.143 16 C 0.030 3.970 17 N -0.403 5.403 18 C -0.473 4.473 19 H 0.076 0.924 20 C -0.293 4.293 21 N -0.619 5.619 22 Si 0.958 3.042 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.212 1.212 26 C -0.004 4.004 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.146 0.854 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.024 0.976 48 H 0.029 0.971 49 H 0.195 0.805 50 H 0.056 0.944 51 H 0.075 0.925 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.220 8.837 -29.907 31.619 hybrid contribution 0.007 -0.586 -1.514 1.624 sum -5.213 8.251 -31.421 32.902 Atomic orbital electron populations 1.21931 0.93362 1.02578 1.02563 1.21759 0.96466 0.95223 0.89747 1.21912 1.01145 0.94891 1.02464 1.61663 1.11229 1.13397 1.40782 1.22487 0.86911 1.02615 1.00712 1.22103 1.04084 0.89814 0.92782 1.21286 0.77890 0.81004 0.90575 1.90683 1.43558 1.61172 1.49828 1.48277 1.59246 1.11961 1.15043 1.22096 0.94029 0.95722 0.90259 1.21916 0.96917 1.00608 0.97193 1.21575 1.01171 0.97325 0.94837 1.21326 0.96509 0.98277 0.94241 0.92145 1.21614 1.01258 0.97633 0.93795 1.20766 0.96059 0.94397 0.85764 1.42600 1.80417 1.06752 1.10524 1.20436 1.39974 0.93293 0.93553 0.92370 1.27308 1.01335 0.97394 1.03289 1.70926 1.50929 1.07709 1.32342 0.82549 0.76066 0.73474 0.72128 1.20210 1.21104 1.21217 1.21524 0.96991 0.97399 0.84465 0.93194 0.90259 0.91645 0.92835 0.92514 0.90292 0.93118 0.94867 0.90483 0.92649 0.89641 0.85438 0.89719 0.87183 0.87487 0.91879 0.90820 0.90949 0.91561 0.91375 0.97565 0.97118 0.80484 0.94414 0.92498 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.99 71.98 0.65 -0.94 16 2 C 0.08 1.00 2.67 44.92 0.12 1.12 16 3 C -0.15 -1.89 8.84 71.98 0.64 -1.25 16 4 N -0.54 -10.78 4.37 -901.60 -3.94 -14.72 16 5 C 0.02 0.43 8.84 127.69 1.13 1.56 16 6 C 0.04 0.71 3.61 85.56 0.31 1.02 16 7 C 0.50 13.04 7.42 87.66 0.65 13.70 16 8 O -0.57 -21.20 13.72 -3.03 -0.04 -21.24 16 9 N -0.61 -13.52 2.97 -818.88 -2.43 -15.95 16 10 C 0.10 1.18 6.34 86.37 0.55 1.73 16 11 C -0.13 -1.50 6.08 30.68 0.19 -1.31 16 12 C -0.11 -1.95 5.17 30.62 0.16 -1.79 16 13 C -0.08 -2.18 2.34 -10.71 -0.03 -2.21 16 14 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 15 C -0.10 -3.47 4.80 30.60 0.15 -3.32 16 16 C 0.16 7.06 6.02 86.38 0.52 7.58 16 17 N -0.76 -41.90 5.60 -343.44 -1.92 -43.83 16 18 C -0.34 -20.94 9.99 84.04 0.84 -20.10 16 19 H 0.06 3.58 7.83 -2.91 -0.02 3.55 16 20 C -0.10 -6.27 5.50 84.86 0.47 -5.80 16 21 N -0.97 -63.03 13.70 21.65 0.30 -62.73 16 22 Si 1.13 54.98 29.92 68.60 2.05 57.03 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 24 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 C 0.12 3.35 5.33 86.37 0.46 3.81 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.06 0.56 6.20 -2.39 -0.01 0.54 16 30 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.06 0.74 6.26 -2.39 -0.01 0.72 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.08 1.48 6.01 -2.39 -0.01 1.47 16 36 H 0.05 1.56 5.88 -2.39 -0.01 1.55 16 37 H 0.09 0.99 7.92 -2.39 -0.02 0.98 16 38 H 0.13 1.54 5.38 -2.38 -0.01 1.52 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.11 0.67 5.95 -2.39 -0.01 0.65 16 41 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.01 0.52 6.70 -2.39 -0.02 0.50 16 49 H 0.36 20.15 6.50 -92.71 -0.60 19.55 16 50 H 0.25 15.80 6.77 -92.71 -0.63 15.17 16 51 H 0.06 2.09 5.73 -2.39 -0.01 2.08 16 52 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -81.05 390.94 1.23 -79.82 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.42 Total: 27.83 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 6.79 Total: -6.21 kcal Atomic # 7 Polarization: -129.24 SS G_CDS: -8.00 Total: -137.23 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.04 Total: -21.24 kcal Atomic # 14 Polarization: 54.98 SS G_CDS: 2.05 Total: 57.03 kcal Total: -81.05 1.23 -79.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753562561.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.586 kcal (2) G-P(sol) polarization free energy of solvation -81.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds