Wall clock time and date at job start Tue Mar 31 2020 09:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.53001 * 109.46984 * 239.99986 * 2 1 3 5 5 N 1.46908 * 109.46940 * 185.00046 * 4 2 1 6 6 C 1.48004 * 110.99643 * 298.72072 * 5 4 2 7 7 C 1.50446 * 112.82317 * 191.34794 * 6 5 4 8 8 C 1.54303 * 108.50408 * 93.72869 * 7 6 5 9 9 C 1.45887 * 112.18404 * 281.46474 * 8 7 6 10 10 C 1.54305 * 112.18427 * 61.11532 * 9 8 7 11 11 C 1.47997 * 111.00083 * 170.00051 * 5 4 2 12 12 N 1.46504 * 109.46930 * 120.00198 * 2 1 3 13 13 C 1.34777 * 119.99854 * 274.99613 * 12 2 1 14 14 O 1.21593 * 119.99953 * 0.02562 * 13 12 2 15 15 N 1.34773 * 120.00097 * 180.27545 * 13 12 2 16 16 C 1.46500 * 120.00431 * 179.72742 * 15 13 12 17 17 C 1.52999 * 109.47528 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47306 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47245 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00090 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00007 * 179.97438 * 19 18 17 22 22 N 1.31522 * 120.00198 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00191 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47070 * 90.00185 * 23 21 19 25 25 H 1.48504 * 109.47306 * 210.00358 * 23 21 19 26 26 H 1.48497 * 109.46876 * 330.00328 * 23 21 19 27 27 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47470 * 299.99796 * 1 2 3 29 29 H 1.08998 * 109.47338 * 59.99872 * 1 2 3 30 30 H 1.08998 * 109.47177 * 304.99932 * 4 2 1 31 31 H 1.09000 * 109.47058 * 65.00582 * 4 2 1 32 32 H 1.08994 * 108.81330 * 312.20896 * 6 5 4 33 33 H 1.09001 * 108.81466 * 70.48733 * 6 5 4 34 34 H 1.09007 * 109.63152 * 334.01981 * 7 6 5 35 35 H 1.09001 * 109.63230 * 213.43661 * 7 6 5 36 36 H 1.08999 * 108.94292 * 160.77075 * 8 7 6 37 37 H 1.08999 * 108.87102 * 42.10750 * 8 7 6 38 38 H 1.09006 * 108.93773 * 300.42056 * 9 8 7 39 39 H 1.09001 * 108.94052 * 181.81608 * 9 8 7 40 40 H 1.09000 * 109.63061 * 161.75992 * 10 9 8 41 41 H 1.08998 * 109.63481 * 41.16854 * 10 9 8 42 42 H 1.08994 * 108.81227 * 205.69805 * 11 5 4 43 43 H 1.08999 * 108.80925 * 324.08413 * 11 5 4 44 44 H 0.97000 * 120.00410 * 95.00338 * 12 2 1 45 45 H 0.97000 * 120.00112 * 359.73180 * 15 13 12 46 46 H 1.09009 * 109.46712 * 300.00517 * 16 15 13 47 47 H 1.08998 * 109.47207 * 59.99494 * 16 15 13 48 48 H 1.09003 * 109.46366 * 299.99640 * 17 16 15 49 49 H 1.08993 * 109.47533 * 59.99613 * 17 16 15 50 50 H 1.09000 * 109.46924 * 300.00089 * 18 17 16 51 51 H 1.09007 * 109.47220 * 59.99210 * 18 17 16 52 52 H 0.96995 * 120.00094 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5040 -0.8267 -1.1904 6 6 4.1313 0.5134 -1.1578 7 6 5.6199 0.4663 -1.3707 8 6 5.9067 0.6753 -2.8724 9 6 5.6763 -0.5367 -3.6511 10 6 4.2113 -1.0139 -3.5666 11 6 4.0146 -1.7210 -2.2533 12 7 2.0183 -0.6907 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8575 1.1614 2.4118 15 7 2.6015 -0.6523 3.4562 16 6 2.7471 0.0800 4.7167 17 6 3.2773 -0.8648 5.7971 18 6 3.4288 -0.1001 7.1136 19 6 3.9504 -1.0308 8.1779 20 1 4.1540 -2.0642 7.9391 21 6 4.1688 -0.5628 9.4563 22 7 3.9214 0.6958 9.7470 23 14 4.8160 -1.7162 10.7754 24 1 6.3007 -1.6833 10.7767 25 1 4.3101 -1.2837 12.1029 26 1 4.3518 -3.0987 10.4952 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6053 -1.7198 -1.2952 31 1 1.7516 -0.1583 -2.1370 32 1 3.6841 1.1299 -1.9375 33 1 3.9291 0.9728 -0.1902 34 1 6.0044 -0.5039 -1.0559 35 1 6.0977 1.2576 -0.7931 36 1 6.9453 0.9823 -2.9949 37 1 5.2576 1.4660 -3.2486 38 1 6.3277 -1.3267 -3.2771 39 1 5.9247 -0.3398 -4.6940 40 1 4.0017 -1.7001 -4.3871 41 1 3.5425 -0.1551 -3.6238 42 1 4.9688 -2.1389 -1.9328 43 1 3.3053 -2.5360 -2.3976 44 1 2.2490 -1.6318 1.1527 45 1 2.8322 -1.5934 3.4127 46 1 3.4475 0.9039 4.5794 47 1 1.7779 0.4742 5.0220 48 1 2.5772 -1.6888 5.9345 49 1 4.2466 -1.2586 5.4917 50 1 4.1286 0.7242 6.9765 51 1 2.4592 0.2934 7.4189 52 1 4.0747 1.0250 10.6465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185369708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:20 Heat of formation + Delta-G solvation = -54.726062 kcal Electronic energy + Delta-G solvation = -26389.958335 eV Core-core repulsion = 22809.249971 eV Total energy + Delta-G solvation = -3580.708364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.15035 -39.34602 -36.57467 -35.14342 -33.87967 -33.23354 -32.44474 -31.52145 -30.23240 -27.82215 -26.50438 -25.36783 -24.65891 -23.16646 -21.52193 -20.86666 -20.64914 -20.25512 -19.70752 -17.96459 -16.77405 -16.55526 -16.24214 -15.67451 -15.29301 -15.11517 -14.69435 -14.52314 -14.32291 -14.06405 -13.81220 -13.74253 -13.41985 -13.37640 -13.05782 -12.65083 -12.55223 -12.23857 -12.02183 -12.00180 -11.73322 -11.63957 -11.53871 -11.36199 -11.09854 -10.88933 -10.86797 -10.69269 -10.65429 -10.55107 -10.52985 -9.94498 -9.79452 -9.37792 -9.07834 -9.01005 -8.46942 -8.43890 -8.33346 -5.98099 -4.00913 2.97826 3.33269 3.39463 3.42457 3.48685 3.57292 4.26970 4.34660 4.45810 4.48741 4.56410 4.67993 4.75264 4.91475 4.93901 5.04538 5.12436 5.18205 5.23652 5.28437 5.37324 5.37549 5.41333 5.47842 5.55899 5.62459 5.68572 5.75517 5.77783 5.80920 5.87185 5.90120 5.92724 6.00952 6.01546 6.09529 6.27133 6.64570 6.65297 6.70547 6.82972 6.87382 6.93303 7.10776 7.26973 7.68627 7.82164 8.01403 8.35014 8.42611 8.94290 9.05955 9.62952 11.13227 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.002254 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.820703 B =12418.522925 C =13233.257823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.165 3.835 3 H 0.085 0.915 4 C 0.050 3.950 5 N -0.543 5.543 6 C 0.063 3.937 7 C -0.121 4.121 8 C -0.122 4.122 9 C -0.116 4.116 10 C -0.149 4.149 11 C 0.059 3.941 12 N -0.731 5.731 13 C 0.701 3.299 14 O -0.600 6.600 15 N -0.743 5.743 16 C 0.137 3.863 17 C -0.120 4.120 18 C 0.024 3.976 19 C -0.521 4.521 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.031 0.969 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.396 0.604 45 H 0.393 0.607 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.053 0.947 50 H 0.019 0.981 51 H 0.019 0.981 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -4.861 -30.510 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 H 0.103 0.897 4 C -0.078 4.078 5 N -0.268 5.268 6 C -0.064 4.064 7 C -0.159 4.159 8 C -0.159 4.159 9 C -0.154 4.154 10 C -0.188 4.188 11 C -0.068 4.068 12 N -0.387 5.387 13 C 0.401 3.599 14 O -0.479 6.479 15 N -0.397 5.397 16 C 0.013 3.987 17 C -0.158 4.158 18 C -0.014 4.014 19 C -0.559 4.559 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.230 0.770 45 H 0.226 0.774 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.037 0.963 51 H 0.037 0.963 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.271 -3.822 -29.877 30.147 hybrid contribution 0.375 -1.039 -0.038 1.105 sum -0.896 -4.862 -29.915 30.321 Atomic orbital electron populations 1.22191 0.95467 1.02036 1.02627 1.20715 0.93190 0.97198 0.83048 0.89723 1.22457 0.88020 1.00962 0.96376 1.61836 1.04326 1.14188 1.46431 1.21799 0.94373 0.88819 1.01365 1.21426 0.95635 1.03108 0.95710 1.20614 1.01637 0.98143 0.95554 1.20543 0.96401 0.98419 1.00021 1.21926 0.97139 1.00907 0.98858 1.21907 1.01240 0.95004 0.88683 1.44924 1.71851 1.13609 1.08284 1.16017 0.78368 0.85096 0.80390 1.90898 1.57708 1.14532 1.84762 1.45353 1.70518 1.13820 1.09991 1.21452 1.01011 0.95132 0.81060 1.21876 0.99601 0.98207 0.96095 1.19029 0.97455 0.95465 0.89448 1.21212 1.43637 0.96388 0.94664 0.92670 1.25035 0.95707 0.95103 0.98688 1.69970 1.48784 1.14143 1.20425 0.86586 0.79084 0.81082 0.81180 1.20683 1.21240 1.19915 0.92549 0.91495 0.92079 0.90273 0.93712 0.95038 0.90539 0.90628 0.91013 0.92115 0.92412 0.91937 0.92507 0.91508 0.91877 0.90706 0.91494 0.77003 0.77409 0.92167 0.92174 0.92853 0.92814 0.96282 0.96278 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.16 1.64 2.21 -67.93 -0.15 1.49 16 3 H 0.08 1.04 6.38 -51.93 -0.33 0.71 16 4 C 0.05 0.37 4.42 -3.82 -0.02 0.35 16 5 N -0.54 -4.33 4.44 -235.90 -1.05 -5.38 16 6 C 0.06 0.57 4.32 -4.49 -0.02 0.55 16 7 C -0.12 -0.99 5.63 -27.32 -0.15 -1.14 16 8 C -0.12 -0.83 5.30 -29.42 -0.16 -0.99 16 9 C -0.12 -0.71 5.30 -29.41 -0.16 -0.86 16 10 C -0.15 -0.89 5.60 -27.32 -0.15 -1.04 16 11 C 0.06 0.39 5.16 -4.50 -0.02 0.36 16 12 N -0.73 -8.20 4.81 -58.67 -0.28 -8.48 16 13 C 0.70 10.97 8.53 -86.92 -0.74 10.23 16 14 O -0.60 -11.92 16.01 5.28 0.08 -11.83 16 15 N -0.74 -11.24 5.56 -65.22 -0.36 -11.60 16 16 C 0.14 2.53 5.67 -4.04 -0.02 2.50 16 17 C -0.12 -2.40 5.27 -26.73 -0.14 -2.55 16 18 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 19 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 23 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.50 7.79 -51.93 -0.40 0.10 16 31 H 0.04 0.31 7.81 -51.93 -0.41 -0.10 16 32 H 0.03 0.28 6.44 -51.93 -0.33 -0.06 16 33 H 0.08 0.88 7.02 -51.93 -0.36 0.52 16 34 H 0.08 0.66 7.08 -51.93 -0.37 0.29 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.41 7.51 -51.93 -0.39 0.02 16 38 H 0.06 0.38 7.52 -51.93 -0.39 -0.01 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.43 6.74 -51.93 -0.35 0.08 16 42 H 0.07 0.52 6.59 -51.93 -0.34 0.18 16 43 H 0.07 0.39 7.64 -51.93 -0.40 -0.01 16 44 H 0.40 3.64 8.62 -40.82 -0.35 3.29 16 45 H 0.39 4.86 8.49 -40.82 -0.35 4.52 16 46 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 398.90 15.07 6.01 6.01 Total: -1.00 -32.49 398.90 -11.62 -44.11 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -9.81 Total: 2.19 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -1.93 Total: -5.31 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.96 Total: -51.85 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.49 -11.62 -44.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185369708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.611 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds