Wall clock time and date at job start Tue Mar 31 2020 09:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.34953 * 117.00384 * 2 1 4 4 O 1.21697 * 119.99873 * 0.02562 * 3 2 1 5 5 C 1.41691 * 120.00334 * 180.02562 * 3 2 1 6 6 C 1.36874 * 126.11510 * 180.02562 * 5 3 2 7 7 N 1.30759 * 114.02010 * 180.19760 * 6 5 3 8 8 C 1.30349 * 117.27133 * 359.56023 * 7 6 5 9 9 S 1.76200 * 124.74494 * 180.20121 * 8 7 6 10 10 C 1.80996 * 100.00220 * 0.25359 * 9 8 7 11 11 C 1.53001 * 109.47337 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47099 * 304.99930 * 11 10 9 13 13 C 1.47199 * 109.46980 * 65.00219 * 11 10 9 14 14 N 9.52067 * 165.69090 * 288.99546 * 2 1 3 15 15 C 1.53004 * 109.47134 * 185.00268 * 11 10 9 16 16 C 1.50694 * 109.47140 * 175.00442 * 15 11 10 17 17 H 1.08004 * 120.00127 * 359.97438 * 16 15 11 18 18 C 1.37882 * 120.00155 * 180.02562 * 16 15 11 19 19 N 1.31514 * 119.99771 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00013 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47161 * 59.99827 * 20 18 16 22 22 H 1.48502 * 109.46976 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47620 * 299.99780 * 20 18 16 24 24 S 1.70921 * 110.51244 * 0.42389 * 8 7 6 25 25 H 1.08999 * 109.47111 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46441 * 299.99851 * 1 2 3 27 27 H 1.08996 * 109.47242 * 59.99345 * 1 2 3 28 28 H 1.08002 * 122.98621 * 359.92386 * 6 5 3 29 29 H 1.08996 * 109.47343 * 300.00415 * 10 9 8 30 30 H 1.09003 * 109.46901 * 59.99737 * 10 9 8 31 31 H 1.09004 * 109.46840 * 294.99963 * 15 11 10 32 32 H 1.08996 * 109.47252 * 54.99945 * 15 11 10 33 33 H 0.97001 * 119.99902 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0418 1.2024 0.0000 4 8 1.3790 2.2231 0.0005 5 6 3.4567 1.2765 -0.0005 6 6 4.2045 2.4230 -0.0001 7 7 5.4956 2.2163 -0.0049 8 6 5.9023 0.9778 -0.0005 9 16 7.5911 0.4754 -0.0005 10 6 8.4007 2.0942 0.0000 11 6 9.9190 1.9052 0.0007 12 1 10.2063 1.2753 0.8426 13 6 10.3340 1.2627 -1.2570 14 7 10.6543 0.7659 -2.2249 15 6 10.6026 3.2682 0.1270 16 6 12.0918 3.0737 0.2510 17 1 12.5089 2.0775 0.2413 18 6 12.9217 4.1674 0.3781 19 7 12.4136 5.3804 0.3904 20 14 14.7675 3.9263 0.5326 21 1 15.2781 3.2267 -0.6737 22 1 15.4310 5.2492 0.6550 23 1 15.0611 3.1113 1.7387 24 16 4.5682 -0.0906 -0.0009 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 3.7670 3.4104 -0.0005 29 1 8.1037 2.6493 -0.8898 30 1 8.1035 2.6487 0.8901 31 1 10.3868 3.8662 -0.7585 32 1 10.2282 3.7818 1.0124 33 1 12.9975 6.1499 0.4794 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295159708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:48:33 Heat of formation + Delta-G solvation = -24.271449 kcal Electronic energy + Delta-G solvation = -19328.252210 eV Core-core repulsion = 15993.319158 eV Total energy + Delta-G solvation = -3334.933051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 312.039 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.97145 -39.65282 -36.93195 -36.85134 -34.12856 -32.36107 -31.56981 -28.43295 -27.86371 -26.50552 -24.17384 -22.99936 -22.00069 -20.63917 -19.66178 -17.75880 -17.20946 -16.95362 -16.88262 -16.68162 -16.04331 -15.06880 -15.06298 -14.77821 -14.25605 -14.09290 -13.88551 -13.59658 -13.05257 -12.88907 -12.53709 -12.26903 -12.05432 -11.85862 -11.59552 -11.28862 -11.13722 -11.10848 -11.06829 -10.81927 -10.60621 -10.42587 -10.22148 -10.18091 -9.76040 -9.66305 -9.37418 -8.53334 -7.85171 -6.17446 -4.22134 -0.36630 0.50669 1.14520 1.30819 1.86255 1.95123 2.44254 2.66540 3.26457 3.31492 3.34349 3.39314 3.48177 4.18082 4.33911 4.50994 4.62860 4.75596 4.83312 4.85730 5.07691 5.18731 5.20607 5.30799 5.60445 5.76425 5.94279 6.09168 6.23828 7.09700 7.30001 7.33373 7.37548 7.75725 8.10067 8.22235 8.81423 9.43967 10.93086 Molecular weight = 312.04amu Principal moments of inertia in cm(-1) A = 0.034446 B = 0.002513 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.669776 B =11138.066893 C =11690.699634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.552 3.448 4 O -0.501 6.501 5 C -0.332 4.332 6 C 0.175 3.825 7 N -0.485 5.485 8 C 0.031 3.969 9 S 0.012 5.988 10 C -0.094 4.094 11 C 0.020 3.980 12 H 0.113 0.887 13 C 0.232 3.768 14 N -0.453 5.453 15 C 0.039 3.961 16 C -0.532 4.532 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.274 1.274 24 S 0.263 5.737 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.195 0.805 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.390 -10.815 2.372 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.398 3.602 4 O -0.392 6.392 5 C -0.459 4.459 6 C 0.009 3.991 7 N -0.204 5.204 8 C -0.348 4.348 9 S 0.248 5.752 10 C -0.245 4.245 11 C -0.003 4.003 12 H 0.131 0.869 13 C -0.086 4.086 14 N -0.130 5.130 15 C -0.001 4.001 16 C -0.570 4.570 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.200 1.200 24 S 0.517 5.483 25 H 0.122 0.878 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.212 0.788 29 H 0.124 0.876 30 H 0.138 0.862 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.163 -12.989 0.914 24.002 hybrid contribution -0.213 2.419 0.441 2.468 sum -20.376 -10.571 1.354 22.995 Atomic orbital electron populations 1.22929 0.76271 1.03875 1.02668 1.86195 1.23805 1.32413 1.84733 1.18052 0.86818 0.81958 0.73413 1.90929 1.66081 1.35492 1.46681 1.23829 0.96120 0.98277 1.27681 1.22615 0.86353 0.99266 0.90819 1.66923 1.15440 1.17898 1.20121 1.29252 1.06933 0.95868 1.02750 1.86101 0.87651 1.13864 1.87558 1.23987 0.96772 0.94632 1.09059 1.19087 0.90262 1.01953 0.89034 0.86877 1.28908 0.92705 0.92384 0.94561 1.80963 1.09079 1.10990 1.11927 1.19220 0.95062 0.86584 0.99275 1.21043 0.91043 0.93078 1.51834 0.92393 1.24947 0.99028 0.95114 0.94746 1.69923 1.35657 0.97873 1.49218 0.86617 0.84994 0.77418 0.78852 1.20194 1.21124 1.19956 1.83971 0.92870 1.07074 1.64337 0.87831 0.91911 0.91923 0.78825 0.87577 0.86185 0.95126 0.93796 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.45 101.05 1.06 1.29 16 2 O -0.35 -3.42 10.27 -41.19 -0.42 -3.84 16 3 C 0.55 6.30 7.73 32.05 0.25 6.55 16 4 O -0.50 -6.68 16.55 -19.42 -0.32 -7.00 16 5 C -0.33 -3.69 6.32 -38.76 -0.25 -3.94 16 6 C 0.18 2.00 11.08 -18.50 -0.20 1.80 16 7 N -0.49 -6.20 9.76 -14.12 -0.14 -6.34 16 8 C 0.03 0.38 7.45 52.13 0.39 0.77 16 9 S 0.01 0.14 21.68 -107.50 -2.33 -2.19 16 10 C -0.09 -1.31 4.55 37.16 0.17 -1.14 16 11 C 0.02 0.35 2.21 -93.40 -0.21 0.14 16 12 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 13 C 0.23 4.46 13.30 -20.82 -0.28 4.18 16 14 N -0.45 -9.51 18.53 42.08 0.78 -8.73 16 15 C 0.04 0.84 4.42 -27.88 -0.12 0.72 16 16 C -0.53 -13.53 8.60 -34.44 -0.30 -13.83 16 17 H 0.06 1.46 7.59 -52.48 -0.40 1.06 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -24.74 13.29 55.43 0.74 -24.00 16 20 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 S 0.26 2.63 22.96 -107.50 -2.47 0.16 16 25 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.39 8.13 -51.92 -0.42 -0.03 16 27 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 28 H 0.20 1.88 8.04 -52.49 -0.42 1.46 16 29 H 0.11 1.53 8.14 -51.92 -0.42 1.11 16 30 H 0.12 1.56 8.14 -51.91 -0.42 1.13 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -30.51 334.51 -7.07 -37.58 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: -3.34 Total: -4.51 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 0.41 Total: -1.84 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 1.38 Total: -39.07 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.74 Total: -10.85 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -4.80 Total: -2.03 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.51 -7.07 -37.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295159708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.304 kcal (2) G-P(sol) polarization free energy of solvation -30.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds