Wall clock time and date at job start Tue Mar 31 2020 10:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35951 * 117.00050 * 2 1 4 4 C 1.38262 * 121.64359 * 180.02562 * 3 2 1 5 5 C 1.35052 * 114.72797 * 179.97438 * 4 3 2 6 6 C 1.50708 * 127.20030 * 180.02562 * 5 4 3 7 7 S 1.81002 * 109.46823 * 90.00193 * 6 5 4 8 8 C 1.76201 * 99.99890 * 179.97438 * 7 6 5 9 9 N 1.32389 * 126.25783 * 0.02809 * 8 7 6 10 10 N 1.28508 * 110.20311 * 179.97438 * 9 8 7 11 11 C 1.33103 * 109.74918 * 359.97438 * 10 9 8 12 12 C 1.39777 * 126.56686 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99827 * 174.33064 * 12 11 10 14 14 C 1.40075 * 119.99990 * 354.32436 * 12 11 10 15 15 N 1.30818 * 120.00415 * 6.04873 * 14 12 11 16 16 Si 1.86803 * 120.00155 * 186.05185 * 14 12 11 17 17 H 1.48504 * 109.47122 * 94.97855 * 16 14 12 18 18 H 1.48499 * 109.47108 * 214.98162 * 16 14 12 19 19 H 1.48498 * 109.46893 * 334.98260 * 16 14 12 20 20 N 1.36674 * 126.25833 * 179.71238 * 8 7 6 21 21 C 1.46495 * 127.15081 * 0.04052 * 20 8 7 22 22 S 1.72021 * 105.59983 * 0.02562 * 5 4 3 23 23 N 1.30348 * 121.64132 * 359.97438 * 3 2 1 24 24 H 1.08993 * 109.47335 * 59.99363 * 1 2 3 25 25 H 1.08993 * 109.46937 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46650 * 299.99468 * 1 2 3 27 27 H 1.08000 * 122.63479 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.46935 * 209.99900 * 6 5 4 29 29 H 1.08999 * 109.47385 * 330.00382 * 6 5 4 30 30 H 0.96994 * 120.00214 * 180.02562 * 15 14 12 31 31 H 1.08993 * 109.47392 * 90.02331 * 21 20 8 32 32 H 1.09007 * 109.47012 * 210.02527 * 21 20 8 33 33 H 1.09001 * 109.47266 * 330.02025 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4243 1.3232 -0.0005 5 6 3.8881 2.5916 -0.0010 6 6 5.3284 3.0352 -0.0022 7 16 5.9036 3.2126 -1.7092 8 6 7.5646 3.7248 -1.4206 9 7 8.1359 3.9004 -0.2393 10 7 9.3558 4.2763 -0.3877 11 6 9.6445 4.3651 -1.6839 12 6 10.8699 4.7430 -2.2401 13 1 11.0167 4.6914 -3.3088 14 6 11.9074 5.1890 -1.4114 15 7 11.7728 5.1404 -0.1111 16 14 13.4834 5.8532 -2.1629 17 1 13.4006 7.3328 -2.2592 18 1 14.6370 5.4765 -1.3071 19 1 13.6652 5.2783 -3.5200 20 7 8.5007 4.0078 -2.3755 21 6 8.3279 3.9480 -3.8289 22 16 2.4909 3.5951 0.0000 23 7 1.3679 2.3244 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 4.0784 0.4639 -0.0014 28 1 5.4141 3.9927 0.5115 29 1 5.9380 2.2916 0.5112 30 1 12.4911 5.4495 0.4628 31 1 7.9839 4.9156 -4.1940 32 1 9.2801 3.7002 -4.2982 33 1 7.5913 3.1836 -4.0762 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601080310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:40 Heat of formation + Delta-G solvation = 75.730182 kcal Electronic energy + Delta-G solvation = -19843.544416 eV Core-core repulsion = 16545.240512 eV Total energy + Delta-G solvation = -3298.303904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 312.046 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57808 -40.25969 -37.04633 -33.75903 -33.42967 -32.86496 -29.44634 -28.78442 -27.33161 -26.51553 -25.55431 -23.16603 -20.95076 -20.68369 -20.13743 -18.32474 -17.55007 -17.37076 -16.43535 -16.20727 -15.51493 -15.03048 -14.85736 -14.75010 -14.37927 -14.08300 -13.41519 -13.36723 -13.20896 -12.81262 -12.36889 -12.28704 -12.15421 -11.51827 -11.36901 -11.27725 -11.17985 -10.98292 -10.81354 -10.63487 -10.40478 -9.82040 -9.65867 -9.51492 -8.78496 -8.52769 -8.46067 -8.42150 -6.95253 -6.70589 -4.63499 0.39021 1.22311 1.60358 1.91092 2.42916 2.66528 2.87415 2.96490 3.03768 3.07529 3.29468 3.83266 4.17105 4.35948 4.38207 4.87753 4.93787 4.99730 5.00990 5.26012 5.28238 5.49803 5.51660 5.67753 5.80498 5.84326 6.00341 6.00756 6.68706 6.83958 6.91094 7.18359 7.41898 7.81251 8.12610 8.64731 8.79342 10.22047 10.55628 Molecular weight = 312.05amu Principal moments of inertia in cm(-1) A = 0.041009 B = 0.002654 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.613295 B =10547.021379 C =10709.153336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.295 6.295 3 C 0.312 3.688 4 C -0.195 4.195 5 C -0.130 4.130 6 C -0.026 4.026 7 S -0.029 6.029 8 C 0.039 3.961 9 N -0.284 5.284 10 N -0.332 5.332 11 C 0.348 3.652 12 C -0.446 4.446 13 H 0.085 0.915 14 C 0.078 3.922 15 N -0.735 5.735 16 Si 0.921 3.079 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.262 1.262 20 N -0.514 5.514 21 C 0.101 3.899 22 S 0.309 5.691 23 N -0.536 5.536 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.168 0.832 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.280 0.720 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.300 -5.418 -2.682 16.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.202 6.202 3 C 0.099 3.901 4 C -0.233 4.233 5 C -0.261 4.261 6 C -0.176 4.176 7 S 0.199 5.801 8 C -0.332 4.332 9 N -0.130 5.130 10 N -0.180 5.180 11 C 0.104 3.896 12 C -0.487 4.487 13 H 0.103 0.897 14 C -0.147 4.147 15 N -0.359 5.359 16 Si 0.745 3.255 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.186 1.186 20 N -0.216 5.216 21 C -0.044 4.044 22 S 0.458 5.542 23 N -0.377 5.377 24 H 0.078 0.922 25 H 0.118 0.882 26 H 0.078 0.922 27 H 0.185 0.815 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.962 -4.188 -1.951 17.580 hybrid contribution 2.167 -1.008 -0.694 2.489 sum -14.795 -5.196 -2.645 15.903 Atomic orbital electron populations 1.22951 0.76996 1.03413 1.02478 1.86286 1.22746 1.22792 1.88332 1.20038 0.89916 0.85068 0.95111 1.20213 0.92678 0.99060 1.11386 1.24704 1.01288 0.97578 1.02485 1.21661 0.89797 1.07160 0.98984 1.84664 1.01505 1.86795 1.07135 1.25251 0.96686 1.21290 0.90013 1.74523 1.04791 1.14639 1.19061 1.75459 1.03425 1.26944 1.12152 1.21629 0.86845 0.93916 0.87206 1.18121 0.93453 1.42161 0.94915 0.89690 1.25805 0.99966 0.94417 0.94552 1.70008 1.31970 1.30138 1.03779 0.86099 0.79972 0.79632 0.79816 1.19389 1.19947 1.18596 1.46017 1.10515 1.59424 1.05678 1.21506 1.02545 1.01401 0.78944 1.84055 0.89075 1.12214 1.68862 1.76442 1.26692 1.01426 1.33107 0.92221 0.88171 0.92238 0.81473 0.86903 0.86433 0.90903 0.92418 0.90305 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.47 101.05 1.06 1.36 16 2 O -0.30 -3.43 10.54 -19.59 -0.21 -3.63 16 3 C 0.31 3.99 7.42 -18.17 -0.13 3.86 16 4 C -0.20 -2.43 10.15 -40.71 -0.41 -2.85 16 5 C -0.13 -1.69 5.84 -35.44 -0.21 -1.89 16 6 C -0.03 -0.39 5.80 36.01 0.21 -0.18 16 7 S -0.03 -0.49 21.77 -107.50 -2.34 -2.83 16 8 C 0.04 0.91 8.09 -87.27 -0.71 0.20 16 9 N -0.28 -7.50 11.62 30.89 0.36 -7.15 16 10 N -0.33 -9.75 10.50 31.26 0.33 -9.42 16 11 C 0.35 9.51 7.53 -154.80 -1.17 8.35 16 12 C -0.45 -11.57 9.05 -38.32 -0.35 -11.91 16 13 H 0.09 1.99 7.27 -52.49 -0.38 1.61 16 14 C 0.08 1.96 5.49 -17.29 -0.09 1.87 16 15 N -0.74 -19.83 11.96 55.56 0.66 -19.16 16 16 Si 0.92 18.16 29.57 -169.99 -5.03 13.13 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 19 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 20 N -0.51 -12.08 3.26 -123.18 -0.40 -12.48 16 21 C 0.10 1.79 10.89 59.84 0.65 2.44 16 22 S 0.31 3.79 23.71 -107.50 -2.55 1.24 16 23 N -0.54 -7.04 11.14 28.92 0.32 -6.71 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.11 1.72 8.14 -51.92 -0.42 1.30 16 29 H 0.12 1.79 8.14 -51.92 -0.42 1.37 16 30 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.31 7.49 -51.92 -0.39 0.92 16 33 H 0.07 1.03 7.85 -51.93 -0.41 0.62 16 LS Contribution 323.88 15.07 4.88 4.88 Total: -1.00 -32.35 323.88 -8.39 -40.74 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -3.27 Total: 0.15 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -1.15 Total: 1.24 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 1.27 Total: -54.92 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -0.21 Total: -3.63 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -4.89 Total: -1.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.35 -8.39 -40.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601080310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.470 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds