Wall clock time and date at job start Tue Mar 31 2020 10:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35951 * 117.00050 * 2 1 4 4 C 1.38262 * 121.64359 * 180.02562 * 3 2 1 5 5 C 1.35052 * 114.72797 * 179.97438 * 4 3 2 6 6 C 1.50708 * 127.20030 * 180.02562 * 5 4 3 7 7 S 1.81002 * 109.46823 * 90.00193 * 6 5 4 8 8 C 1.76201 * 99.99890 * 179.97438 * 7 6 5 9 9 N 1.32389 * 126.25783 * 0.02809 * 8 7 6 10 10 N 1.28508 * 110.20311 * 179.97438 * 9 8 7 11 11 C 1.33103 * 109.74918 * 359.97438 * 10 9 8 12 12 C 1.39777 * 126.56686 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99827 * 174.33064 * 12 11 10 14 14 C 1.40075 * 119.99990 * 354.32436 * 12 11 10 15 15 N 1.30818 * 120.00415 * 6.04873 * 14 12 11 16 16 Si 1.86803 * 120.00155 * 186.05185 * 14 12 11 17 17 H 1.48504 * 109.47122 * 94.97855 * 16 14 12 18 18 H 1.48499 * 109.47108 * 214.98162 * 16 14 12 19 19 H 1.48498 * 109.46893 * 334.98260 * 16 14 12 20 20 N 1.36674 * 126.25833 * 179.71238 * 8 7 6 21 21 C 1.46495 * 127.15081 * 0.04052 * 20 8 7 22 22 S 1.72021 * 105.59983 * 0.02562 * 5 4 3 23 23 N 1.30348 * 121.64132 * 359.97438 * 3 2 1 24 24 H 1.08993 * 109.47335 * 59.99363 * 1 2 3 25 25 H 1.08993 * 109.46937 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46650 * 299.99468 * 1 2 3 27 27 H 1.08000 * 122.63479 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.46935 * 209.99900 * 6 5 4 29 29 H 1.08999 * 109.47385 * 330.00382 * 6 5 4 30 30 H 0.96994 * 120.00214 * 180.02562 * 15 14 12 31 31 H 1.08993 * 109.47392 * 90.02331 * 21 20 8 32 32 H 1.09007 * 109.47012 * 210.02527 * 21 20 8 33 33 H 1.09001 * 109.47266 * 330.02025 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4243 1.3232 -0.0005 5 6 3.8881 2.5916 -0.0010 6 6 5.3284 3.0352 -0.0022 7 16 5.9036 3.2126 -1.7092 8 6 7.5646 3.7248 -1.4206 9 7 8.1359 3.9004 -0.2393 10 7 9.3558 4.2763 -0.3877 11 6 9.6445 4.3651 -1.6839 12 6 10.8699 4.7430 -2.2401 13 1 11.0167 4.6914 -3.3088 14 6 11.9074 5.1890 -1.4114 15 7 11.7728 5.1404 -0.1111 16 14 13.4834 5.8532 -2.1629 17 1 13.4006 7.3328 -2.2592 18 1 14.6370 5.4765 -1.3071 19 1 13.6652 5.2783 -3.5200 20 7 8.5007 4.0078 -2.3755 21 6 8.3279 3.9480 -3.8289 22 16 2.4909 3.5951 0.0000 23 7 1.3679 2.3244 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 4.0784 0.4639 -0.0014 28 1 5.4141 3.9927 0.5115 29 1 5.9380 2.2916 0.5112 30 1 12.4911 5.4495 0.4628 31 1 7.9839 4.9156 -4.1940 32 1 9.2801 3.7002 -4.2982 33 1 7.5913 3.1836 -4.0762 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601080310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:04:40 Heat of formation + Delta-G solvation = 54.211590 kcal Electronic energy + Delta-G solvation = -19844.477533 eV Core-core repulsion = 16545.240512 eV Total energy + Delta-G solvation = -3299.237020 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 312.046 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.45585 -41.18831 -37.97965 -35.62100 -35.16941 -33.98234 -31.33232 -29.78545 -28.40951 -28.00673 -27.34325 -24.16432 -22.79253 -22.40984 -21.24702 -19.37956 -19.21737 -18.47685 -17.78909 -17.32751 -17.17029 -16.57237 -16.29410 -15.86790 -15.67060 -15.43912 -15.01375 -14.43667 -14.30482 -13.95967 -13.89892 -13.80158 -13.16259 -12.98188 -12.87476 -12.73390 -12.30132 -12.20808 -11.97879 -11.91571 -11.79847 -11.70802 -11.43434 -10.63948 -10.58337 -10.33986 -10.28809 -9.39452 -8.58609 -8.54290 -6.57968 -0.69234 0.20924 0.51482 0.62593 1.09776 1.19657 1.43141 1.46195 1.59900 1.61791 2.09641 2.19303 2.44635 2.51288 3.30459 3.33864 3.82973 3.91779 4.09001 4.31891 4.36005 4.41901 4.46865 4.60168 4.63892 4.66856 4.73778 4.88405 4.96652 5.07489 5.32611 5.56642 6.02753 6.03430 6.22982 6.76528 6.92285 8.41197 8.63709 Molecular weight = 312.05amu Principal moments of inertia in cm(-1) A = 0.041009 B = 0.002654 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.613295 B =10547.021379 C =10709.153336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.303 6.303 3 C 0.307 3.693 4 C -0.189 4.189 5 C -0.140 4.140 6 C -0.021 4.021 7 S 0.018 5.982 8 C 0.051 3.949 9 N -0.326 5.326 10 N -0.387 5.387 11 C 0.318 3.682 12 C -0.471 4.471 13 H 0.103 0.897 14 C 0.030 3.970 15 N -0.787 5.787 16 Si 1.005 2.995 17 H -0.264 1.264 18 H -0.271 1.271 19 H -0.246 1.246 20 N -0.520 5.520 21 C 0.092 3.908 22 S 0.326 5.674 23 N -0.545 5.545 24 H 0.058 0.942 25 H 0.131 0.869 26 H 0.058 0.942 27 H 0.180 0.820 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.285 0.715 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.247 -5.922 -4.471 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.210 6.210 3 C 0.094 3.906 4 C -0.227 4.227 5 C -0.271 4.271 6 C -0.172 4.172 7 S 0.245 5.755 8 C -0.323 4.323 9 N -0.171 5.171 10 N -0.234 5.234 11 C 0.072 3.928 12 C -0.511 4.511 13 H 0.121 0.879 14 C -0.191 4.191 15 N -0.412 5.412 16 Si 0.824 3.176 17 H -0.189 1.189 18 H -0.196 1.196 19 H -0.170 1.170 20 N -0.222 5.222 21 C -0.050 4.050 22 S 0.476 5.524 23 N -0.387 5.387 24 H 0.077 0.923 25 H 0.149 0.851 26 H 0.077 0.923 27 H 0.198 0.802 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.935 -4.702 -3.756 18.918 hybrid contribution 2.153 -0.960 -0.151 2.362 sum -15.783 -5.662 -3.907 17.217 Atomic orbital electron populations 1.23217 0.75261 1.05467 1.02383 1.86289 1.24482 1.22119 1.88067 1.20135 0.90069 0.85441 0.94956 1.20382 0.92963 0.99245 1.10142 1.24448 1.00346 0.98221 1.04051 1.21606 0.90999 1.07008 0.97541 1.84478 0.96671 1.85662 1.08658 1.26327 0.99011 1.17524 0.89391 1.74399 1.04601 1.17195 1.20867 1.75319 1.05004 1.29014 1.14057 1.22032 0.88462 0.94882 0.87408 1.18617 0.93661 1.42785 0.96002 0.87869 1.26967 1.03598 0.93871 0.94699 1.70149 1.33582 1.31719 1.05734 0.84856 0.74647 0.78773 0.79300 1.18863 1.19564 1.16950 1.46358 1.09589 1.58464 1.07763 1.21865 1.04038 1.03312 0.75815 1.84004 0.88319 1.11646 1.68459 1.76421 1.27152 1.01817 1.33267 0.92304 0.85138 0.92290 0.80223 0.87372 0.86808 0.90506 0.90666 0.89310 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.47 113.37 1.19 1.64 16 2 O -0.30 -6.44 10.54 -93.00 -0.98 -7.42 16 3 C 0.31 7.30 7.42 84.92 0.63 7.93 16 4 C -0.19 -4.37 10.15 21.54 0.22 -4.15 16 5 C -0.14 -3.43 5.84 24.95 0.15 -3.29 16 6 C -0.02 -0.62 5.80 71.24 0.41 -0.21 16 7 S 0.02 0.60 21.77 -56.49 -1.23 -0.63 16 8 C 0.05 2.36 8.09 179.18 1.45 3.81 16 9 N -0.33 -17.76 11.62 -56.17 -0.65 -18.41 16 10 N -0.39 -23.65 10.50 -55.01 -0.58 -24.23 16 11 C 0.32 17.81 7.53 133.23 1.00 18.81 16 12 C -0.47 -24.66 9.05 23.09 0.21 -24.45 16 13 H 0.10 4.78 7.27 -2.91 -0.02 4.76 16 14 C 0.03 1.50 5.49 85.29 0.47 1.97 16 15 N -0.79 -43.97 11.96 21.85 0.26 -43.70 16 16 Si 1.01 37.10 29.57 68.60 2.03 39.13 16 17 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 18 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 19 H -0.25 -8.37 7.11 99.48 0.71 -7.66 16 20 N -0.52 -24.34 3.26 -543.62 -1.77 -26.11 16 21 C 0.09 3.10 10.89 127.77 1.39 4.49 16 22 S 0.33 7.52 23.71 -56.49 -1.34 6.19 16 23 N -0.55 -13.39 11.14 -176.09 -1.96 -15.35 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 28 H 0.11 3.29 8.14 -2.40 -0.02 3.27 16 29 H 0.11 3.44 8.14 -2.40 -0.02 3.42 16 30 H 0.28 14.34 8.30 -92.71 -0.77 13.57 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.09 2.79 7.49 -2.38 -0.02 2.77 16 33 H 0.09 2.58 7.85 -2.39 -0.02 2.56 16 Total: -1.00 -72.51 323.88 2.05 -70.47 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.15 Total: 13.52 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 7.11 Total: 6.55 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -4.70 Total: -127.81 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.98 Total: -7.42 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Atomic # 16 Polarization: 8.12 SS G_CDS: -2.57 Total: 5.55 kcal Total: -72.51 2.05 -70.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601080310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.679 kcal (2) G-P(sol) polarization free energy of solvation -72.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds