Wall clock time and date at job start Tue Mar 31 2020 09:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47274 * 270.28005 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27569 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27996 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.47869 * 126.94967 * 359.69323 * 9 7 2 11 11 C 1.55993 * 105.11721 * 181.87325 * 10 9 7 12 12 H 1.08997 * 116.16918 * 159.88887 * 11 10 9 13 13 C 1.57090 * 99.47471 * 33.16079 * 11 10 9 14 14 C 1.49296 * 126.94212 * 180.02562 * 9 7 2 15 15 H 1.08999 * 116.14849 * 15.85051 * 14 9 7 16 16 C 1.56016 * 104.09351 * 246.70019 * 14 9 7 17 17 N 1.47867 * 105.10528 * 288.76921 * 16 14 9 18 18 C 1.34774 * 126.94368 * 181.98523 * 17 16 14 19 19 O 1.21715 * 120.00118 * 180.02562 * 18 17 16 20 20 C 1.46443 * 120.00209 * 0.02562 * 18 17 16 21 21 S 1.75832 * 125.45968 * 359.69952 * 20 18 17 22 22 C 1.70607 * 91.58421 * 179.97438 * 21 20 18 23 23 C 1.33768 * 110.99800 * 0.30892 * 22 21 20 24 24 C 1.36789 * 125.46448 * 180.02562 * 20 18 17 25 25 Cl 1.73595 * 123.37814 * 0.02562 * 24 20 18 26 26 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 27 27 H 1.09007 * 110.30943 * 300.90657 * 10 9 7 28 28 H 1.09001 * 110.31495 * 63.08692 * 10 9 7 29 29 H 1.09000 * 112.36875 * 191.50974 * 13 11 10 30 30 H 1.09006 * 112.36822 * 64.07324 * 13 11 10 31 31 H 1.09000 * 110.31442 * 47.67734 * 16 14 9 32 32 H 1.09005 * 110.31049 * 169.75784 * 16 14 9 33 33 H 1.07998 * 124.49603 * 180.02562 * 22 21 20 34 34 H 1.08003 * 122.44648 * 179.78171 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1424 -2.5669 0.0063 11 6 -0.3638 -4.1104 0.0496 12 1 -1.3396 -4.4464 0.4001 13 6 0.8877 -4.5274 0.9027 14 6 1.9100 -3.7618 -0.0112 15 1 2.9652 -3.8358 0.2518 16 6 1.5027 -4.3426 -1.4007 17 7 0.0463 -4.5806 -1.3069 18 6 -0.7500 -5.1139 -2.2545 19 8 -1.9403 -5.2528 -2.0416 20 6 -0.1832 -5.5261 -3.5403 21 16 1.5075 -5.3849 -4.0021 22 6 1.1955 -6.0688 -5.5336 23 6 -0.1010 -6.3690 -5.6693 24 6 -0.8852 -6.0771 -4.5770 25 17 -2.5943 -6.3759 -4.5210 26 1 -0.4850 0.8400 0.0040 27 1 -0.5736 -2.0959 0.8897 28 1 -0.5820 -2.1487 -0.8992 29 1 1.0527 -5.6048 0.8978 30 1 0.8531 -4.1237 1.9146 31 1 1.7185 -3.6224 -2.1899 32 1 2.0293 -5.2783 -1.5888 33 1 1.9444 -6.2330 -6.2942 34 1 -0.5027 -6.8088 -6.5703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032418521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:33 Heat of formation + Delta-G solvation = 60.751256 kcal Electronic energy + Delta-G solvation = -21629.808820 eV Core-core repulsion = 18296.518924 eV Total energy + Delta-G solvation = -3333.289896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 312.044 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.14658 -38.54382 -37.20274 -35.95138 -33.70233 -31.76693 -29.98937 -28.85360 -28.55911 -25.41700 -24.98322 -23.44677 -21.64956 -20.01392 -19.41627 -19.02992 -18.03214 -16.71618 -16.15381 -15.86178 -15.48692 -14.95547 -14.39222 -13.92723 -13.68784 -13.53844 -13.44534 -12.98725 -12.71811 -12.34631 -11.98445 -11.76401 -11.45503 -11.36091 -11.24563 -11.06438 -10.91054 -10.78203 -10.67031 -10.61819 -10.26629 -10.11342 -9.68773 -9.55881 -8.92746 -8.75165 -8.54667 -8.02889 -6.98316 -5.80817 -3.15932 0.41211 1.21118 1.74543 2.20148 2.54687 3.22887 3.34986 3.39576 3.42522 3.45113 4.37889 4.64075 4.88503 5.03640 5.08732 5.11793 5.29849 5.50087 5.54497 5.57883 5.71423 5.78426 5.83376 5.91657 6.05873 6.21710 6.33970 6.40630 6.52123 6.61352 7.37475 7.44453 7.68208 7.95156 8.05441 8.47418 9.05535 9.66574 10.34712 11.31215 Molecular weight = 312.04amu Principal moments of inertia in cm(-1) A = 0.018596 B = 0.004470 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.346500 B = 6262.432124 C = 6525.661639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.082 0.918 9 N -0.596 5.596 10 C 0.172 3.828 11 C 0.102 3.898 12 H 0.117 0.883 13 C -0.150 4.150 14 C 0.147 3.853 15 H 0.110 0.890 16 C 0.068 3.932 17 N -0.601 5.601 18 C 0.596 3.404 19 O -0.525 6.525 20 C -0.250 4.250 21 S 0.270 5.730 22 C -0.253 4.253 23 C -0.144 4.144 24 C 0.007 3.993 25 Cl -0.022 7.022 26 H 0.255 0.745 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.172 0.828 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 -13.792 -7.680 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.320 5.320 10 C 0.047 3.953 11 C 0.000 4.000 12 H 0.135 0.865 13 C -0.190 4.190 14 C 0.038 3.962 15 H 0.128 0.872 16 C -0.059 4.059 17 N -0.335 5.335 18 C 0.383 3.617 19 O -0.404 6.404 20 C -0.372 4.372 21 S 0.537 5.463 22 C -0.391 4.391 23 C -0.175 4.175 24 C -0.035 4.035 25 Cl 0.007 6.993 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.189 0.811 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.368 -13.076 -6.944 15.436 hybrid contribution -0.956 0.354 -1.176 1.556 sum 3.412 -12.722 -8.120 15.473 Atomic orbital electron populations 1.69914 1.04983 1.25441 1.56072 1.24830 0.95671 0.97767 1.01832 0.86117 0.78588 0.83413 0.77589 1.21582 1.21648 1.20576 1.19041 0.90417 0.81982 1.44808 0.90052 1.45265 1.01365 0.99254 1.86091 1.21961 0.84681 0.87080 1.01550 1.24379 0.97999 0.97758 0.79838 0.86492 1.24162 0.96479 0.99023 0.99323 1.23129 0.96755 0.86340 0.89997 0.87238 1.23512 0.80212 0.99188 1.02968 1.49050 1.09191 1.59768 1.15460 1.16331 0.85623 0.78213 0.81484 1.90850 1.13933 1.56276 1.79343 1.24663 0.98496 1.13554 1.00471 1.83725 1.03494 1.54418 1.04642 1.25531 1.00753 1.07333 1.05457 1.19673 0.92611 1.05733 0.99475 1.20264 0.87799 1.01463 0.93992 1.98385 1.08691 1.93863 1.98345 0.93490 0.92394 0.93274 0.91488 0.89461 0.90380 0.92325 0.81050 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.37 10.56 55.49 0.59 -25.79 16 2 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 3 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.23 -6.06 10.38 -15.06 -0.16 -6.21 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -13.86 3.02 -156.37 -0.47 -14.34 16 10 C 0.17 4.05 4.77 -1.69 -0.01 4.05 16 11 C 0.10 1.95 5.24 -62.55 -0.33 1.62 16 12 H 0.12 2.16 8.05 -51.93 -0.42 1.74 16 13 C -0.15 -2.44 6.80 -22.32 -0.15 -2.59 16 14 C 0.15 2.60 5.53 -62.57 -0.35 2.26 16 15 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 16 C 0.07 1.12 4.56 -1.68 -0.01 1.12 16 17 N -0.60 -11.17 2.96 -158.38 -0.47 -11.63 16 18 C 0.60 11.49 7.86 -12.96 -0.10 11.38 16 19 O -0.53 -11.42 15.43 5.18 0.08 -11.34 16 20 C -0.25 -4.05 6.39 -36.80 -0.24 -4.29 16 21 S 0.27 3.30 18.67 -107.50 -2.01 1.30 16 22 C -0.25 -2.62 10.92 29.16 0.32 -2.30 16 23 C -0.14 -1.69 10.06 -41.38 -0.42 -2.10 16 24 C 0.01 0.11 6.39 -40.34 -0.26 -0.15 16 25 Cl -0.02 -0.34 27.24 -51.86 -1.41 -1.75 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.06 1.50 7.48 -51.92 -0.39 1.11 16 28 H 0.05 1.35 7.66 -51.93 -0.40 0.95 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.08 1.41 7.19 -51.93 -0.37 1.03 16 32 H 0.06 0.79 6.92 -51.93 -0.36 0.43 16 33 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.15 1.38 8.06 -52.48 -0.42 0.95 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -31.15 307.11 -9.47 -40.63 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -3.60 Total: -0.56 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -1.79 Total: 2.58 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.35 Total: -51.76 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.01 Total: 1.30 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.41 Total: -1.75 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.15 -9.47 -40.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032418521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.378 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds