Wall clock time and date at job start Tue Mar 31 2020 10:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38833 * 120.34218 * 2 1 4 4 C 1.38331 * 118.51968 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.44424 * 180.27844 * 4 3 2 6 6 C 1.39125 * 119.11603 * 359.97438 * 4 3 2 7 7 N 1.38998 * 119.69686 * 180.02562 * 6 4 3 8 8 C 1.46497 * 119.99812 * 180.02562 * 7 6 4 9 9 C 1.53007 * 109.47189 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47345 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47267 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00141 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99850 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99646 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00130 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47147 * 90.00322 * 15 13 11 17 17 H 1.48503 * 109.46880 * 209.99780 * 15 13 11 18 18 H 1.48493 * 109.47139 * 330.00109 * 15 13 11 19 19 N 1.32409 * 120.59990 * 0.02562 * 6 4 3 20 20 C 1.32038 * 121.61335 * 359.97438 * 19 6 4 21 21 Br 1.89095 * 119.58677 * 179.97438 * 20 19 6 22 22 H 1.08997 * 109.47589 * 270.02519 * 1 2 3 23 23 H 1.09006 * 109.47101 * 30.02566 * 1 2 3 24 24 H 1.08998 * 109.47631 * 150.01709 * 1 2 3 25 25 H 1.08003 * 120.74211 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.46676 * 269.71819 * 5 4 3 27 27 H 1.09004 * 109.47095 * 29.71310 * 5 4 3 28 28 H 1.08994 * 109.47713 * 149.71883 * 5 4 3 29 29 H 0.96996 * 120.00331 * 0.02562 * 7 6 4 30 30 H 1.09000 * 109.47578 * 299.99787 * 8 7 6 31 31 H 1.09000 * 109.47111 * 60.00546 * 8 7 6 32 32 H 1.09000 * 109.46717 * 300.00351 * 9 8 7 33 33 H 1.09004 * 109.47053 * 60.00119 * 9 8 7 34 34 H 1.09001 * 109.46743 * 300.00251 * 10 9 8 35 35 H 1.08996 * 109.47278 * 59.99663 * 10 9 8 36 36 H 0.97000 * 119.99837 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2083 1.1982 0.0000 4 6 3.5909 1.1542 0.0005 5 6 4.3954 2.4284 0.0069 6 6 4.2288 -0.0822 0.0016 7 7 5.6176 -0.1405 0.0027 8 6 6.2962 -1.4388 0.0033 9 6 7.8109 -1.2226 0.0038 10 6 8.5197 -2.5785 0.0038 11 6 10.0115 -2.3656 0.0049 12 1 10.4140 -1.3633 0.0052 13 6 10.8627 -3.4502 0.0056 14 7 12.1646 -3.2644 0.0072 15 14 10.1667 -5.1837 0.0058 16 1 9.9829 -5.6435 -1.3942 17 1 11.1072 -6.0946 0.7065 18 1 8.8568 -5.1911 0.7052 19 7 3.5251 -1.2038 0.0016 20 6 2.2048 -1.1924 0.0011 21 35 1.2570 -2.8287 0.0003 22 1 -0.3634 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3634 -0.8901 -0.5135 25 1 1.6861 2.1435 -0.0004 26 1 4.5942 2.7376 -1.0192 27 1 3.8344 3.2098 0.5196 28 1 5.3395 2.2596 0.5248 29 1 6.1374 0.6784 0.0031 30 1 6.0085 -1.9989 0.8930 31 1 6.0099 -1.9988 -0.8870 32 1 8.0983 -0.6627 -0.8862 33 1 8.0977 -0.6624 0.8938 34 1 8.2322 -3.1387 0.8935 35 1 8.2329 -3.1384 -0.8864 36 1 12.7635 -4.0274 0.0080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434341.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:28 Heat of formation + Delta-G solvation = 18.511938 kcal Electronic energy + Delta-G solvation = -17362.213074 eV Core-core repulsion = 14505.744081 eV Total energy + Delta-G solvation = -2856.468993 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 312.053 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.58433 -36.66844 -34.31566 -33.83115 -32.66256 -31.17388 -30.89209 -27.65005 -27.21746 -25.60125 -23.54589 -21.91352 -21.26815 -20.22447 -17.56773 -17.13135 -16.60049 -15.38200 -14.89367 -14.59840 -14.53265 -14.23708 -13.77031 -13.51740 -13.22904 -12.96276 -12.78135 -12.67205 -12.61613 -12.21517 -11.93358 -11.63179 -11.14718 -11.04755 -10.81903 -10.33189 -10.13183 -9.97731 -9.77423 -9.70688 -9.52174 -9.40578 -9.22377 -8.55272 -7.57165 -6.06159 -4.04800 0.88529 1.27245 1.30299 3.29659 3.31922 3.39319 3.44042 3.59960 4.39873 4.44906 4.63813 4.72128 4.90716 5.03973 5.23718 5.27940 5.28107 5.37905 5.43362 5.59373 5.66018 5.69960 5.84309 5.90196 6.05556 6.06480 6.27519 6.47385 6.54822 6.77052 7.11512 7.23358 7.34310 7.37242 7.76591 8.08139 8.50632 8.97623 9.56227 11.07146 Molecular weight = 312.05amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.003471 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.973929 B = 8063.819481 C = 9609.440432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.173 4.173 3 C -0.032 4.032 4 C -0.191 4.191 5 C -0.104 4.104 6 C 0.415 3.585 7 N -0.714 5.714 8 C 0.125 3.875 9 C -0.114 4.114 10 C -0.009 4.009 11 C -0.522 4.522 12 H 0.071 0.929 13 C 0.067 3.933 14 N -0.904 5.904 15 Si 0.879 3.121 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.264 1.264 19 N -0.515 5.515 20 C 0.170 3.830 21 Br -0.017 7.017 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.139 0.861 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.409 0.591 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.910 9.076 -0.003 28.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.181 4.181 3 C -0.058 4.058 4 C -0.198 4.198 5 C -0.161 4.161 6 C 0.175 3.825 7 N -0.346 5.346 8 C 0.002 3.998 9 C -0.152 4.152 10 C -0.047 4.047 11 C -0.560 4.560 12 H 0.089 0.911 13 C -0.135 4.135 14 N -0.542 5.542 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.189 1.189 19 N -0.233 5.233 20 C -0.048 4.048 21 Br 0.067 6.933 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.157 0.843 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.247 0.753 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.507 7.357 0.001 27.510 hybrid contribution -0.071 0.365 -0.010 0.372 sum -26.578 7.723 -0.009 27.678 Atomic orbital electron populations 1.20740 0.89879 1.03228 1.02602 1.20252 0.97481 0.91877 1.08457 1.21034 0.92425 0.97491 0.94829 1.20274 0.94701 0.94887 1.09982 1.20605 0.99302 0.93689 1.02507 1.18136 0.85882 0.87810 0.90668 1.44946 1.01057 1.10103 1.78502 1.21600 0.93026 0.83454 1.01738 1.21709 0.90828 1.01116 1.01563 1.19482 0.96382 0.92237 0.96644 1.21101 0.88859 0.94972 1.51065 0.91053 1.25026 0.94716 0.99270 0.94454 1.69913 1.02203 1.31080 1.51053 0.86776 0.79386 0.84552 0.78616 1.20222 1.21354 1.18860 1.66868 1.06502 1.29721 1.20251 1.22216 0.90625 0.91095 1.00823 1.96713 1.71173 1.28115 1.97249 0.91108 0.91433 0.90836 0.84338 0.90983 0.91099 0.91537 0.75323 0.92036 0.92027 0.92258 0.92246 0.96322 0.96753 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.56 36.00 0.34 -0.51 16 2 C -0.17 -1.90 5.90 -104.43 -0.62 -2.51 16 3 C -0.03 -0.31 9.53 -39.33 -0.37 -0.69 16 4 C -0.19 -2.14 5.92 -104.26 -0.62 -2.76 16 5 C -0.10 -0.85 9.58 36.00 0.35 -0.50 16 6 C 0.41 5.91 7.46 -155.02 -1.16 4.76 16 7 N -0.71 -10.13 5.61 -60.42 -0.34 -10.47 16 8 C 0.13 2.11 5.69 -4.04 -0.02 2.08 16 9 C -0.11 -2.17 5.27 -26.73 -0.14 -2.31 16 10 C -0.01 -0.23 4.04 -27.89 -0.11 -0.34 16 11 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 12 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 15 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 18 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 19 N -0.52 -8.09 9.53 -10.83 -0.10 -8.20 16 20 C 0.17 2.31 7.16 -17.49 -0.13 2.18 16 21 Br -0.02 -0.20 31.94 -68.01 -2.17 -2.37 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 24 H 0.07 0.59 6.64 -51.93 -0.34 0.24 16 25 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.07 0.54 6.57 -51.93 -0.34 0.20 16 29 H 0.41 4.92 6.45 -40.82 -0.26 4.65 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 35 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 318.33 15.07 4.80 4.80 Total: -1.00 -31.83 318.33 -9.72 -41.56 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.10 Total: -1.47 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.91 Total: -13.92 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.33 Total: -45.86 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Atomic # 35 Polarization: -0.20 SS G_CDS: -2.17 Total: -2.37 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.83 -9.72 -41.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434341.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.068 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds