Wall clock time and date at job start Tue Mar 31 2020 10:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.70621 * 124.81749 * 2 1 4 4 C 1.75682 * 91.80016 * 179.97438 * 3 2 1 5 5 C 1.33014 * 110.02829 * 359.72276 * 4 3 2 6 6 C 1.35951 * 124.81677 * 179.97438 * 2 1 3 7 7 C 1.47794 * 123.02741 * 0.02562 * 6 2 1 8 8 C 1.40077 * 119.88899 * 310.02006 * 7 6 2 9 9 C 1.36162 * 120.10912 * 179.73803 * 8 7 6 10 10 C 1.40996 * 119.88546 * 0.51808 * 9 8 7 11 11 C 1.40965 * 120.10733 * 179.73802 * 10 9 8 12 12 H 1.08004 * 119.99518 * 154.24657 * 11 10 9 13 13 C 1.39899 * 120.00076 * 334.24630 * 11 10 9 14 14 N 1.30872 * 119.99733 * 334.58687 * 13 11 10 15 15 Si 1.86797 * 119.99985 * 154.58845 * 13 11 10 16 16 H 1.48497 * 109.47249 * 179.97438 * 15 13 11 17 17 H 1.48506 * 109.46882 * 299.99781 * 15 13 11 18 18 H 1.48497 * 109.47389 * 59.99828 * 15 13 11 19 19 C 1.40959 * 119.77947 * 359.46466 * 10 9 8 20 20 C 1.50702 * 120.05193 * 180.29842 * 19 10 9 21 21 F 1.39902 * 109.47011 * 179.97438 * 20 19 10 22 22 F 1.39895 * 109.46949 * 299.99851 * 20 19 10 23 23 F 1.39897 * 109.47192 * 59.99877 * 20 19 10 24 24 C 1.36183 * 119.89104 * 0.27288 * 19 10 9 25 25 H 1.09000 * 109.47377 * 270.00281 * 1 2 3 26 26 H 1.08999 * 109.47332 * 30.00540 * 1 2 3 27 27 H 1.09008 * 109.47087 * 150.00101 * 1 2 3 28 28 H 1.08001 * 124.98505 * 180.02562 * 4 3 2 29 29 H 1.08007 * 123.06910 * 180.26782 * 5 4 3 30 30 H 1.08001 * 119.94950 * 0.02562 * 8 7 6 31 31 H 1.07997 * 120.06093 * 180.26074 * 9 8 7 32 32 H 0.96997 * 120.00458 * 354.16715 * 14 13 11 33 33 H 1.08001 * 119.94159 * 180.02562 * 24 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4812 1.4008 0.0000 4 6 3.9543 0.4435 0.0008 5 6 3.6554 -0.8526 0.0071 6 6 2.2833 -1.1161 0.0005 7 6 1.7259 -2.4849 0.0006 8 6 0.7390 -2.8367 0.9303 9 6 0.2186 -4.0950 0.9309 10 6 0.6825 -5.0476 0.0007 11 6 0.1509 -6.3531 0.0008 12 1 0.1649 -6.9419 -0.9046 13 6 -0.3947 -6.8862 1.1735 14 7 0.0015 -6.4434 2.3396 15 14 -1.6885 -8.2299 1.0750 16 1 -2.1015 -8.6210 2.4467 17 1 -2.8685 -7.7269 0.3267 18 1 -1.1237 -9.4105 0.3732 19 6 1.6755 -4.6884 -0.9331 20 6 2.1710 -5.6997 -1.9345 21 9 3.1464 -5.1120 -2.7471 22 9 2.7232 -6.7931 -1.2587 23 9 1.1029 -6.1326 -2.7276 24 6 2.1859 -3.4258 -0.9291 25 1 -0.3634 0.0001 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3634 -0.8901 -0.5139 28 1 4.9557 0.8480 0.0014 29 1 4.4049 -1.6303 0.0129 30 1 0.3869 -2.1075 1.6449 31 1 -0.5453 -4.3641 1.6454 32 1 0.7320 -5.8077 2.3944 33 1 2.9464 -3.1496 -1.6445 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240501501.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:34 Heat of formation + Delta-G solvation = -124.346376 kcal Electronic energy + Delta-G solvation = -23378.246433 eV Core-core repulsion = 19465.213459 eV Total energy + Delta-G solvation = -3913.032974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 312.049 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.18260 -46.76338 -46.55641 -38.79904 -37.07364 -34.13873 -31.95654 -30.64980 -29.81395 -26.82317 -25.32215 -24.33357 -22.68475 -21.42667 -20.58244 -18.56198 -18.36494 -17.47739 -17.43759 -16.69110 -16.50513 -15.04674 -14.71824 -14.42749 -14.08721 -13.68735 -13.58475 -13.49901 -13.20567 -13.13658 -13.04954 -12.82352 -12.81941 -12.43910 -12.25291 -12.16194 -11.85546 -11.65425 -11.38472 -11.24114 -11.15681 -10.97945 -10.54325 -10.38984 -10.01393 -9.74792 -9.27663 -8.36926 -8.32304 -8.18226 -7.58466 -7.37847 -4.80613 1.29752 1.97517 2.26491 2.36926 2.47254 3.01613 3.05066 3.24032 3.31092 3.77748 3.81812 4.25654 4.96226 5.00936 5.16190 5.23470 5.37856 5.54559 5.61085 5.79327 5.86633 5.93311 5.96449 6.12868 6.31314 6.38965 6.58001 6.68943 6.78323 6.85911 7.05558 7.30366 7.39044 7.47673 7.63732 7.76843 7.90674 8.31842 8.46826 9.69694 Molecular weight = 312.05amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.004835 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.978685 B = 5790.307059 C = 6918.848112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.227 4.227 3 S 0.112 5.888 4 C -0.238 4.238 5 C -0.114 4.114 6 C -0.024 4.024 7 C -0.189 4.189 8 C -0.039 4.039 9 C -0.214 4.214 10 C 0.129 3.871 11 C -0.488 4.488 12 H 0.090 0.910 13 C 0.040 3.960 14 N -0.769 5.769 15 Si 1.065 2.935 16 H -0.270 1.270 17 H -0.270 1.270 18 H -0.271 1.271 19 C -0.310 4.310 20 C 0.522 3.478 21 F -0.200 7.200 22 F -0.184 7.184 23 F -0.190 7.190 24 C -0.004 4.004 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.157 0.843 29 H 0.138 0.862 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.304 0.696 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.904 7.522 -2.431 8.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.345 4.345 3 S 0.378 5.622 4 C -0.373 4.373 5 C -0.145 4.145 6 C -0.036 4.036 7 C -0.192 4.192 8 C -0.058 4.058 9 C -0.233 4.233 10 C 0.125 3.875 11 C -0.514 4.514 12 H 0.108 0.892 13 C -0.186 4.186 14 N -0.390 5.390 15 Si 0.887 3.113 16 H -0.195 1.195 17 H -0.195 1.195 18 H -0.196 1.196 19 C -0.313 4.313 20 C 0.468 3.532 21 F -0.182 7.182 22 F -0.166 7.166 23 F -0.172 7.172 24 C -0.022 4.022 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.174 0.826 29 H 0.155 0.845 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.118 0.882 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.647 8.146 -1.468 8.302 hybrid contribution 1.620 -0.723 -1.092 2.083 sum 2.267 7.423 -2.559 8.172 Atomic orbital electron populations 1.20238 0.88223 1.02651 1.02032 1.24112 1.00593 0.96179 1.13598 1.82649 0.96536 1.09584 1.73473 1.25323 1.01322 0.97111 1.13564 1.20362 0.96236 0.95925 1.01969 1.18043 0.91344 0.93162 1.01063 1.17468 1.06618 0.91314 1.03835 1.20516 0.94162 0.95510 0.95586 1.20815 1.04481 0.93301 1.04697 1.17250 0.87513 0.93318 0.89459 1.20930 1.31435 0.99021 0.99970 0.89233 1.27231 0.99231 1.00896 0.91204 1.70482 1.20223 1.21530 1.26720 0.83621 0.75332 0.74765 0.77565 1.19463 1.19501 1.19600 1.19177 1.09438 0.94935 1.07711 1.18290 0.74132 0.80863 0.79903 1.93042 1.65154 1.84312 1.75666 1.93139 1.86041 1.57243 1.80146 1.93104 1.56876 1.90937 1.76239 1.20143 0.95592 0.91204 0.95300 0.91545 0.92405 0.90121 0.82570 0.84466 0.88443 0.86832 0.88195 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 8.97 36.01 0.32 -0.74 16 2 C -0.23 -3.70 6.31 -35.13 -0.22 -3.92 16 3 S 0.11 1.52 23.04 -107.50 -2.48 -0.95 16 4 C -0.24 -3.31 11.17 28.92 0.32 -2.98 16 5 C -0.11 -1.85 9.93 -40.84 -0.41 -2.26 16 6 C -0.02 -0.44 5.38 -106.26 -0.57 -1.01 16 7 C -0.19 -3.89 5.13 -104.62 -0.54 -4.43 16 8 C -0.04 -0.82 8.34 -39.64 -0.33 -1.15 16 9 C -0.21 -4.94 7.88 -39.28 -0.31 -5.25 16 10 C 0.13 3.14 5.28 -106.79 -0.56 2.58 16 11 C -0.49 -12.02 7.72 -37.93 -0.29 -12.31 16 12 H 0.09 2.22 6.08 -52.48 -0.32 1.90 16 13 C 0.04 0.93 4.93 -17.34 -0.09 0.84 16 14 N -0.77 -18.72 12.31 55.55 0.68 -18.03 16 15 Si 1.07 20.08 30.00 -169.99 -5.10 14.98 16 16 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 17 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 18 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 19 C -0.31 -7.20 5.38 -104.33 -0.56 -7.77 16 20 C 0.52 11.60 2.82 36.01 0.10 11.70 16 21 F -0.20 -4.10 15.95 2.25 0.04 -4.07 16 22 F -0.18 -4.22 16.48 2.25 0.04 -4.18 16 23 F -0.19 -4.23 15.67 2.25 0.04 -4.20 16 24 C 0.00 -0.08 8.94 -39.65 -0.35 -0.43 16 25 H 0.07 0.91 7.96 -51.93 -0.41 0.50 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.31 7.16 -51.92 -0.37 0.93 16 28 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.14 2.12 8.06 -52.48 -0.42 1.70 16 30 H 0.10 1.86 7.40 -52.49 -0.39 1.48 16 31 H 0.11 2.67 6.49 -52.49 -0.34 2.33 16 32 H 0.30 7.60 6.70 -40.82 -0.27 7.32 16 33 H 0.10 2.10 7.11 -52.49 -0.37 1.72 16 LS Contribution 306.13 15.07 4.61 4.61 Total: -1.00 -24.95 306.13 -8.20 -33.16 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -2.54 Total: 5.81 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -3.49 Total: -27.13 kcal Atomic # 7 Polarization: -18.72 SS G_CDS: 0.68 Total: -18.03 kcal Atomic # 9 Polarization: -12.55 SS G_CDS: 0.11 Total: -12.45 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.10 Total: 14.98 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.48 Total: -0.95 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -24.95 -8.20 -33.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240501501.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.191 kcal (2) G-P(sol) polarization free energy of solvation -24.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds