Wall clock time and date at job start Tue Mar 31 2020 10:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.70621 * 124.81749 * 2 1 4 4 C 1.75682 * 91.80016 * 179.97438 * 3 2 1 5 5 C 1.33014 * 110.02829 * 359.72276 * 4 3 2 6 6 C 1.35951 * 124.81677 * 179.97438 * 2 1 3 7 7 C 1.47794 * 123.02741 * 0.02562 * 6 2 1 8 8 C 1.40077 * 119.88899 * 310.02006 * 7 6 2 9 9 C 1.36162 * 120.10912 * 179.73803 * 8 7 6 10 10 C 1.40996 * 119.88546 * 0.51808 * 9 8 7 11 11 C 1.40965 * 120.10733 * 179.73802 * 10 9 8 12 12 H 1.08004 * 119.99518 * 154.24657 * 11 10 9 13 13 C 1.39899 * 120.00076 * 334.24630 * 11 10 9 14 14 N 1.30872 * 119.99733 * 334.58687 * 13 11 10 15 15 Si 1.86797 * 119.99985 * 154.58845 * 13 11 10 16 16 H 1.48497 * 109.47249 * 179.97438 * 15 13 11 17 17 H 1.48506 * 109.46882 * 299.99781 * 15 13 11 18 18 H 1.48497 * 109.47389 * 59.99828 * 15 13 11 19 19 C 1.40959 * 119.77947 * 359.46466 * 10 9 8 20 20 C 1.50702 * 120.05193 * 180.29842 * 19 10 9 21 21 F 1.39902 * 109.47011 * 179.97438 * 20 19 10 22 22 F 1.39895 * 109.46949 * 299.99851 * 20 19 10 23 23 F 1.39897 * 109.47192 * 59.99877 * 20 19 10 24 24 C 1.36183 * 119.89104 * 0.27288 * 19 10 9 25 25 H 1.09000 * 109.47377 * 270.00281 * 1 2 3 26 26 H 1.08999 * 109.47332 * 30.00540 * 1 2 3 27 27 H 1.09008 * 109.47087 * 150.00101 * 1 2 3 28 28 H 1.08001 * 124.98505 * 180.02562 * 4 3 2 29 29 H 1.08007 * 123.06910 * 180.26782 * 5 4 3 30 30 H 1.08001 * 119.94950 * 0.02562 * 8 7 6 31 31 H 1.07997 * 120.06093 * 180.26074 * 9 8 7 32 32 H 0.96997 * 120.00458 * 354.16715 * 14 13 11 33 33 H 1.08001 * 119.94159 * 180.02562 * 24 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4812 1.4008 0.0000 4 6 3.9543 0.4435 0.0008 5 6 3.6554 -0.8526 0.0071 6 6 2.2833 -1.1161 0.0005 7 6 1.7259 -2.4849 0.0006 8 6 0.7390 -2.8367 0.9303 9 6 0.2186 -4.0950 0.9309 10 6 0.6825 -5.0476 0.0007 11 6 0.1509 -6.3531 0.0008 12 1 0.1649 -6.9419 -0.9046 13 6 -0.3947 -6.8862 1.1735 14 7 0.0015 -6.4434 2.3396 15 14 -1.6885 -8.2299 1.0750 16 1 -2.1015 -8.6210 2.4467 17 1 -2.8685 -7.7269 0.3267 18 1 -1.1237 -9.4105 0.3732 19 6 1.6755 -4.6884 -0.9331 20 6 2.1710 -5.6997 -1.9345 21 9 3.1464 -5.1120 -2.7471 22 9 2.7232 -6.7931 -1.2587 23 9 1.1029 -6.1326 -2.7276 24 6 2.1859 -3.4258 -0.9291 25 1 -0.3634 0.0001 1.0276 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3634 -0.8901 -0.5139 28 1 4.9557 0.8480 0.0014 29 1 4.4049 -1.6303 0.0129 30 1 0.3869 -2.1075 1.6449 31 1 -0.5453 -4.3641 1.6454 32 1 0.7320 -5.8077 2.3944 33 1 2.9464 -3.1496 -1.6445 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240501501.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:33 Heat of formation + Delta-G solvation = -133.296813 kcal Electronic energy + Delta-G solvation = -23378.634553 eV Core-core repulsion = 19465.213459 eV Total energy + Delta-G solvation = -3913.421094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 312.049 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.96496 -48.51681 -48.37224 -40.37688 -38.53620 -35.84525 -33.33449 -32.21433 -31.50990 -28.38904 -26.87156 -25.99044 -24.02145 -23.08389 -22.24114 -20.20901 -19.92742 -19.27431 -19.19376 -18.11144 -17.84329 -16.73600 -16.19649 -16.07497 -15.63540 -15.38358 -15.33051 -14.95347 -14.83819 -14.78766 -14.62481 -14.56245 -14.27015 -14.10678 -13.78621 -13.56196 -13.31944 -13.15104 -12.95308 -12.74763 -12.53128 -12.35928 -12.00792 -11.74616 -11.70461 -11.39238 -10.99460 -9.98697 -9.87051 -9.46698 -9.36975 -8.85047 -6.62934 0.05275 0.56377 0.74812 0.84182 1.17751 1.49829 1.55903 1.78896 1.88767 1.99491 2.26271 2.55299 3.18161 3.22936 3.40434 3.79399 4.05277 4.15130 4.19066 4.34725 4.40655 4.64637 4.70234 4.78181 4.84270 4.94415 5.14299 5.14397 5.25141 5.40841 5.42754 5.58130 5.66391 5.74936 5.92541 5.99383 6.13981 6.52790 6.68083 7.86355 Molecular weight = 312.05amu Principal moments of inertia in cm(-1) A = 0.016419 B = 0.004835 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.978685 B = 5790.307059 C = 6918.848112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.238 4.238 3 S 0.180 5.820 4 C -0.228 4.228 5 C -0.139 4.139 6 C -0.061 4.061 7 C -0.170 4.170 8 C -0.037 4.037 9 C -0.226 4.226 10 C 0.108 3.892 11 C -0.522 4.522 12 H 0.080 0.920 13 C 0.011 3.989 14 N -0.789 5.789 15 Si 1.110 2.890 16 H -0.265 1.265 17 H -0.259 1.259 18 H -0.261 1.261 19 C -0.325 4.325 20 C 0.524 3.476 21 F -0.189 7.189 22 F -0.190 7.190 23 F -0.192 7.192 24 C -0.016 4.016 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.189 0.811 29 H 0.137 0.863 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.290 0.710 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 9.912 -2.668 10.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.356 4.356 3 S 0.446 5.554 4 C -0.363 4.363 5 C -0.169 4.169 6 C -0.073 4.073 7 C -0.173 4.173 8 C -0.056 4.056 9 C -0.245 4.245 10 C 0.104 3.896 11 C -0.548 4.548 12 H 0.098 0.902 13 C -0.209 4.209 14 N -0.410 5.410 15 Si 0.926 3.074 16 H -0.190 1.190 17 H -0.184 1.184 18 H -0.185 1.185 19 C -0.327 4.327 20 C 0.471 3.529 21 F -0.170 7.170 22 F -0.172 7.172 23 F -0.173 7.173 24 C -0.034 4.034 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.206 0.794 29 H 0.154 0.846 30 H 0.134 0.866 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.036 10.555 -1.715 10.744 hybrid contribution 1.630 -1.124 -1.079 2.254 sum 2.666 9.431 -2.794 10.191 Atomic orbital electron populations 1.20289 0.87504 1.02855 1.02720 1.24467 1.01690 0.97417 1.11976 1.82460 0.94808 1.06825 1.71279 1.25746 1.03250 0.96372 1.10971 1.20346 0.95346 0.97195 1.04050 1.18062 0.92704 0.92195 1.04385 1.17801 1.04879 0.92640 1.01958 1.20724 0.93981 0.95013 0.95832 1.20800 1.04886 0.94076 1.04753 1.17532 0.88009 0.93802 0.90222 1.20973 1.34111 0.99527 1.00198 0.90214 1.28432 1.00039 1.01967 0.90443 1.70583 1.20713 1.22557 1.27169 0.83089 0.73577 0.72799 0.77903 1.18961 1.18389 1.18530 1.19407 1.09497 0.95899 1.07934 1.18184 0.74256 0.80585 0.79902 1.93054 1.64639 1.84070 1.75271 1.93121 1.86112 1.57569 1.80375 1.93093 1.57060 1.90952 1.76201 1.20363 0.96103 0.90930 0.96046 0.90583 0.89958 0.92251 0.79384 0.84558 0.86573 0.87881 0.89774 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.03 8.97 71.24 0.64 -1.40 16 2 C -0.24 -7.10 6.31 25.16 0.16 -6.94 16 3 S 0.18 4.14 23.04 -56.49 -1.30 2.84 16 4 C -0.23 -5.46 11.17 66.65 0.74 -4.72 16 5 C -0.14 -4.22 9.93 21.46 0.21 -4.01 16 6 C -0.06 -2.11 5.38 -20.92 -0.11 -2.22 16 7 C -0.17 -6.94 5.13 -19.87 -0.10 -7.04 16 8 C -0.04 -1.55 8.34 22.23 0.19 -1.37 16 9 C -0.23 -10.79 7.88 22.46 0.18 -10.61 16 10 C 0.11 5.46 5.28 -21.27 -0.11 5.35 16 11 C -0.52 -26.69 7.72 23.34 0.18 -26.51 16 12 H 0.08 4.11 6.08 -2.91 -0.02 4.09 16 13 C 0.01 0.53 4.93 85.24 0.42 0.95 16 14 N -0.79 -39.80 12.31 21.82 0.27 -39.54 16 15 Si 1.11 41.00 30.00 68.60 2.06 43.06 16 16 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 17 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 18 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 19 C -0.32 -15.42 5.38 -19.68 -0.11 -15.53 16 20 C 0.52 23.68 2.82 71.24 0.20 23.88 16 21 F -0.19 -7.70 15.95 44.97 0.72 -6.99 16 22 F -0.19 -8.91 16.48 44.97 0.74 -8.17 16 23 F -0.19 -8.69 15.67 44.97 0.70 -7.99 16 24 C -0.02 -0.68 8.94 22.23 0.20 -0.48 16 25 H 0.08 1.91 7.96 -2.39 -0.02 1.89 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.86 7.16 -2.38 -0.02 1.84 16 28 H 0.19 3.23 8.06 -2.91 -0.02 3.20 16 29 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 30 H 0.12 4.38 7.40 -2.91 -0.02 4.36 16 31 H 0.10 5.06 6.49 -2.91 -0.02 5.05 16 32 H 0.29 15.18 6.70 -92.71 -0.62 14.56 16 33 H 0.12 4.68 7.11 -2.91 -0.02 4.66 16 Total: -1.00 -54.70 306.13 7.19 -47.51 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 1.32 Total: 19.89 kcal Atomic # 6 Polarization: -53.31 SS G_CDS: 2.69 Total: -50.63 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.27 Total: -39.54 kcal Atomic # 9 Polarization: -25.31 SS G_CDS: 2.16 Total: -23.14 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.06 Total: 43.06 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.30 Total: 2.84 kcal Total: -54.70 7.19 -47.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240501501.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.787 kcal (2) G-P(sol) polarization free energy of solvation -54.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds