Wall clock time and date at job start Tue Mar 31 2020 10:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86799 * 119.99966 * 2 1 4 4 H 1.48500 * 109.47007 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46885 * 299.99606 * 3 2 1 6 6 H 1.48496 * 109.47205 * 59.99565 * 3 2 1 7 7 C 1.39928 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99655 * 162.74601 * 7 2 1 9 9 C 1.41432 * 119.99906 * 342.75091 * 7 2 1 10 10 C 1.40752 * 120.17103 * 334.78461 * 9 7 2 11 11 C 1.37902 * 119.96566 * 180.02562 * 10 9 7 12 12 F 1.35106 * 119.83532 * 179.97438 * 11 10 9 13 13 C 1.38659 * 120.33155 * 359.72940 * 11 10 9 14 14 C 1.39675 * 120.34512 * 0.54920 * 13 11 10 15 15 C 1.48383 * 119.98713 * 179.72385 * 14 13 11 16 16 C 1.39364 * 120.07705 * 309.72653 * 15 14 13 17 17 C 1.38385 * 119.91142 * 179.97438 * 16 15 14 18 18 O 1.35999 * 119.97019 * 180.02562 * 17 16 15 19 19 C 1.38978 * 120.06573 * 0.26902 * 17 16 15 20 20 F 1.35098 * 119.92461 * 179.70252 * 19 17 16 21 21 C 1.38543 * 120.15503 * 359.45538 * 19 17 16 22 22 F 1.35104 * 119.95745 * 180.29505 * 21 19 17 23 23 C 1.38465 * 120.08859 * 0.54482 * 21 19 17 24 24 F 1.35100 * 120.03527 * 179.74753 * 23 21 19 25 25 C 1.38787 * 120.02503 * 359.44853 * 14 13 11 26 26 H 0.97003 * 119.99939 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.01768 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.83185 * 180.29443 * 13 11 10 29 29 H 1.07996 * 120.04344 * 359.97438 * 16 15 14 30 30 H 0.96695 * 114.00099 * 89.99429 * 18 17 16 31 31 H 1.07996 * 120.16357 * 180.25424 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2118 0.0005 8 1 3.0515 -1.2329 -0.2769 9 6 1.3485 -2.4089 0.3643 10 6 0.2198 -2.3677 1.2042 11 6 -0.4197 -3.5375 1.5566 12 9 -1.5025 -3.4949 2.3635 13 6 0.0401 -4.7569 1.0830 14 6 1.1623 -4.8140 0.2534 15 6 1.6511 -6.1238 -0.2439 16 6 1.8595 -7.1754 0.6465 17 6 2.3149 -8.3956 0.1789 18 8 2.5181 -9.4228 1.0467 19 6 2.5696 -8.5709 -1.1760 20 9 3.0199 -9.7616 -1.6286 21 6 2.3580 -7.5291 -2.0645 22 9 2.6013 -7.7058 -3.3816 23 6 1.9025 -6.3055 -1.6036 24 9 1.7014 -5.2887 -2.4702 25 6 1.8170 -3.6456 -0.1105 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1452 -1.4203 1.5725 28 1 -0.4697 -5.6677 1.3603 29 1 1.6657 -7.0382 1.7001 30 1 1.7428 -9.9855 1.1787 31 1 2.6825 -3.6868 -0.7552 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245638708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:36 Heat of formation + Delta-G solvation = -183.833150 kcal Electronic energy + Delta-G solvation = -24681.992942 eV Core-core repulsion = 20200.167252 eV Total energy + Delta-G solvation = -4481.825690 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.051 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.70077 -49.03004 -48.33134 -47.80602 -39.66560 -37.79657 -36.47103 -33.98433 -31.52451 -29.85346 -29.65467 -28.03571 -25.66553 -23.59404 -23.18334 -20.97555 -20.95813 -18.93866 -18.19128 -18.07228 -17.45867 -16.92062 -16.61271 -15.99229 -15.73972 -15.38710 -15.16595 -15.03438 -14.80848 -14.64911 -14.63744 -14.45830 -14.37776 -14.14566 -13.40131 -13.02019 -12.68230 -12.27539 -12.03461 -11.77261 -11.65840 -11.29133 -11.14081 -11.09360 -10.81969 -10.53576 -10.22151 -9.91183 -9.44624 -8.95610 -8.71428 -7.72576 -7.49379 -6.99718 -4.65860 0.55922 0.64532 2.34863 2.48261 2.94894 2.98155 3.03091 3.10619 3.24896 3.77371 3.80468 4.09525 4.27351 4.35900 4.50187 4.59523 5.15696 5.27364 5.47865 5.61050 5.76465 5.79126 5.96221 6.08907 6.34573 6.46873 6.68107 6.75445 6.96414 7.18507 7.25958 7.40920 7.47387 7.68430 7.94052 8.30873 8.56381 8.59584 9.94011 Molecular weight = 312.05amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.004020 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.202824 B = 6963.433855 C = 7938.432520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.450 4.450 8 H 0.086 0.914 9 C 0.126 3.874 10 C -0.189 4.189 11 C 0.108 3.892 12 F -0.164 7.164 13 C -0.255 4.255 14 C -0.027 4.027 15 C -0.009 4.009 16 C -0.091 4.091 17 C 0.094 3.906 18 O -0.479 6.479 19 C 0.053 3.947 20 F -0.119 7.119 21 C 0.047 3.953 22 F -0.117 7.117 23 C 0.098 3.902 24 F -0.105 7.105 25 C -0.193 4.193 26 H 0.285 0.715 27 H 0.132 0.868 28 H 0.105 0.895 29 H 0.159 0.841 30 H 0.395 0.605 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 -10.986 0.382 11.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.479 4.479 8 H 0.104 0.896 9 C 0.123 3.877 10 C -0.209 4.209 11 C 0.089 3.911 12 F -0.143 7.143 13 C -0.275 4.275 14 C -0.027 4.027 15 C -0.010 4.010 16 C -0.109 4.109 17 C 0.047 3.953 18 O -0.290 6.290 19 C 0.033 3.967 20 F -0.098 7.098 21 C 0.025 3.975 22 F -0.096 7.096 23 C 0.077 3.923 24 F -0.083 7.083 25 C -0.212 4.212 26 H 0.097 0.903 27 H 0.150 0.850 28 H 0.123 0.877 29 H 0.177 0.823 30 H 0.252 0.748 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.339 -10.604 0.324 10.864 hybrid contribution -0.302 0.425 -0.536 0.748 sum 2.037 -10.179 -0.211 10.383 Atomic orbital electron populations 1.69804 1.07755 1.29875 1.33198 1.25996 0.94805 1.01780 0.91949 0.86171 0.81002 0.80347 0.78816 1.18121 1.19721 1.19462 1.19668 0.98210 0.90749 1.39241 0.89571 1.17272 0.90224 0.92067 0.88088 1.21412 1.00627 0.96153 1.02736 1.17472 0.85455 0.94876 0.93315 1.91356 1.53603 1.97539 1.71774 1.20115 1.02249 0.95596 1.09567 1.17692 0.96480 0.89204 0.99335 1.18896 0.97096 0.95494 0.89544 1.21413 0.97826 0.90187 1.01501 1.17974 1.01671 0.89820 0.85794 1.84896 1.40789 1.41042 1.62239 1.17672 1.05760 0.81862 0.91453 1.91520 1.86581 1.42301 1.89383 1.17270 1.07662 0.93581 0.78957 1.91550 1.92205 1.95610 1.30198 1.17431 1.03048 0.83909 0.87923 1.91616 1.92130 1.56607 1.67962 1.21110 1.03467 0.91375 1.05275 0.90343 0.85037 0.87663 0.82321 0.74781 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.06 10.96 55.55 0.61 -18.45 16 2 C 0.07 1.74 5.14 -17.34 -0.09 1.65 16 3 Si 0.91 17.44 29.59 -169.99 -5.03 12.41 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.45 -11.03 9.05 -37.73 -0.34 -11.37 16 8 H 0.09 2.01 7.90 -52.49 -0.41 1.60 16 9 C 0.13 3.11 5.56 -106.87 -0.59 2.52 16 10 C -0.19 -4.65 8.66 -38.76 -0.34 -4.98 16 11 C 0.11 2.46 7.28 -39.55 -0.29 2.17 16 12 F -0.16 -3.61 17.26 2.25 0.04 -3.57 16 13 C -0.26 -5.20 9.49 -38.89 -0.37 -5.57 16 14 C -0.03 -0.54 5.31 -104.98 -0.56 -1.09 16 15 C -0.01 -0.15 5.47 -104.85 -0.57 -0.72 16 16 C -0.09 -1.21 9.44 -39.11 -0.37 -1.58 16 17 C 0.09 1.16 6.70 -39.25 -0.26 0.90 16 18 O -0.48 -4.95 13.36 -19.74 -0.26 -5.21 16 19 C 0.05 0.73 7.31 -39.19 -0.29 0.45 16 20 F -0.12 -1.64 17.01 2.25 0.04 -1.61 16 21 C 0.05 0.70 7.30 -39.39 -0.29 0.42 16 22 F -0.12 -1.83 17.08 2.25 0.04 -1.79 16 23 C 0.10 1.62 7.15 -39.04 -0.28 1.34 16 24 F -0.11 -1.97 15.78 2.25 0.04 -1.93 16 25 C -0.19 -4.31 8.59 -38.52 -0.33 -4.64 16 26 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 27 H 0.13 3.37 6.18 -52.49 -0.32 3.05 16 28 H 0.11 1.87 8.04 -52.49 -0.42 1.45 16 29 H 0.16 1.89 8.04 -52.49 -0.42 1.47 16 30 H 0.40 2.03 9.06 45.56 0.41 2.44 16 31 H 0.10 2.23 7.76 -52.49 -0.41 1.82 16 LS Contribution 300.11 15.07 4.52 4.52 Total: -1.00 -26.58 300.11 -5.69 -32.27 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -0.71 Total: 3.89 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -4.97 Total: -20.53 kcal Atomic # 7 Polarization: -19.06 SS G_CDS: 0.61 Total: -18.45 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.26 Total: -5.21 kcal Atomic # 9 Polarization: -9.05 SS G_CDS: 0.15 Total: -8.89 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -26.58 -5.69 -32.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245638708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.565 kcal (2) G-P(sol) polarization free energy of solvation -26.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds