Wall clock time and date at job start Tue Mar 31 2020 10:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86799 * 119.99966 * 2 1 4 4 H 1.48500 * 109.47007 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46885 * 299.99606 * 3 2 1 6 6 H 1.48496 * 109.47205 * 59.99565 * 3 2 1 7 7 C 1.39928 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99655 * 162.74601 * 7 2 1 9 9 C 1.41432 * 119.99906 * 342.75091 * 7 2 1 10 10 C 1.40752 * 120.17103 * 334.78461 * 9 7 2 11 11 C 1.37902 * 119.96566 * 180.02562 * 10 9 7 12 12 F 1.35106 * 119.83532 * 179.97438 * 11 10 9 13 13 C 1.38659 * 120.33155 * 359.72940 * 11 10 9 14 14 C 1.39675 * 120.34512 * 0.54920 * 13 11 10 15 15 C 1.48383 * 119.98713 * 179.72385 * 14 13 11 16 16 C 1.39364 * 120.07705 * 309.72653 * 15 14 13 17 17 C 1.38385 * 119.91142 * 179.97438 * 16 15 14 18 18 O 1.35999 * 119.97019 * 180.02562 * 17 16 15 19 19 C 1.38978 * 120.06573 * 0.26902 * 17 16 15 20 20 F 1.35098 * 119.92461 * 179.70252 * 19 17 16 21 21 C 1.38543 * 120.15503 * 359.45538 * 19 17 16 22 22 F 1.35104 * 119.95745 * 180.29505 * 21 19 17 23 23 C 1.38465 * 120.08859 * 0.54482 * 21 19 17 24 24 F 1.35100 * 120.03527 * 179.74753 * 23 21 19 25 25 C 1.38787 * 120.02503 * 359.44853 * 14 13 11 26 26 H 0.97003 * 119.99939 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.01768 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.83185 * 180.29443 * 13 11 10 29 29 H 1.07996 * 120.04344 * 359.97438 * 16 15 14 30 30 H 0.96695 * 114.00099 * 89.99429 * 18 17 16 31 31 H 1.07996 * 120.16357 * 180.25424 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2118 0.0005 8 1 3.0515 -1.2329 -0.2769 9 6 1.3485 -2.4089 0.3643 10 6 0.2198 -2.3677 1.2042 11 6 -0.4197 -3.5375 1.5566 12 9 -1.5025 -3.4949 2.3635 13 6 0.0401 -4.7569 1.0830 14 6 1.1623 -4.8140 0.2534 15 6 1.6511 -6.1238 -0.2439 16 6 1.8595 -7.1754 0.6465 17 6 2.3149 -8.3956 0.1789 18 8 2.5181 -9.4228 1.0467 19 6 2.5696 -8.5709 -1.1760 20 9 3.0199 -9.7616 -1.6286 21 6 2.3580 -7.5291 -2.0645 22 9 2.6013 -7.7058 -3.3816 23 6 1.9025 -6.3055 -1.6036 24 9 1.7014 -5.2887 -2.4702 25 6 1.8170 -3.6456 -0.1105 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1452 -1.4203 1.5725 28 1 -0.4697 -5.6677 1.3603 29 1 1.6657 -7.0382 1.7001 30 1 1.7428 -9.9855 1.1787 31 1 2.6825 -3.6868 -0.7552 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245638708.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:35 Heat of formation + Delta-G solvation = -197.703186 kcal Electronic energy + Delta-G solvation = -24682.594392 eV Core-core repulsion = 20200.167252 eV Total energy + Delta-G solvation = -4482.427140 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.051 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.89759 -50.25435 -49.58438 -49.57372 -40.81042 -39.30808 -37.64124 -35.67264 -32.98844 -31.56350 -30.84465 -29.49256 -27.44145 -24.93218 -24.35535 -22.69281 -22.48275 -20.15281 -19.39874 -19.35750 -18.84307 -18.16261 -17.84829 -17.64941 -17.04111 -16.76337 -16.60958 -16.58749 -16.39107 -16.23214 -16.04170 -15.74269 -15.53739 -15.42804 -14.86403 -14.55561 -14.03981 -13.75015 -13.59966 -13.22287 -13.18010 -12.81075 -12.62482 -12.44293 -12.14363 -12.12652 -11.91222 -11.59405 -11.13591 -10.23832 -9.90024 -9.47085 -9.16599 -8.74010 -6.50182 -0.63550 -0.48208 0.72640 0.74187 1.38999 1.44992 1.54641 1.89087 2.08947 2.17837 2.54403 2.76960 2.95219 3.17712 3.23954 3.42727 3.51646 3.76598 4.04981 4.37428 4.45795 4.51454 4.64743 4.68560 4.82198 4.87771 5.00997 5.19979 5.32181 5.48910 5.66513 5.70536 5.89004 6.16431 6.49919 6.60905 6.77369 6.78931 8.22635 Molecular weight = 312.05amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.004020 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.202824 B = 6963.433855 C = 7938.432520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.036 3.964 3 Si 0.984 3.016 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.486 4.486 8 H 0.086 0.914 9 C 0.103 3.897 10 C -0.216 4.216 11 C 0.099 3.901 12 F -0.161 7.161 13 C -0.243 4.243 14 C -0.014 4.014 15 C -0.025 4.025 16 C -0.073 4.073 17 C 0.123 3.877 18 O -0.479 6.479 19 C 0.062 3.938 20 F -0.117 7.117 21 C 0.045 3.955 22 F -0.123 7.123 23 C 0.081 3.919 24 F -0.126 7.126 25 C -0.207 4.207 26 H 0.292 0.708 27 H 0.112 0.888 28 H 0.141 0.859 29 H 0.181 0.819 30 H 0.423 0.577 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.555 -13.119 1.163 13.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.514 4.514 8 H 0.104 0.896 9 C 0.100 3.900 10 C -0.237 4.237 11 C 0.079 3.921 12 F -0.140 7.140 13 C -0.263 4.263 14 C -0.014 4.014 15 C -0.026 4.026 16 C -0.091 4.091 17 C 0.077 3.923 18 O -0.293 6.293 19 C 0.041 3.959 20 F -0.095 7.095 21 C 0.023 3.977 22 F -0.101 7.101 23 C 0.061 3.939 24 F -0.104 7.104 25 C -0.226 4.226 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.158 0.842 29 H 0.199 0.801 30 H 0.285 0.715 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.872 -12.779 1.114 13.145 hybrid contribution -0.482 0.801 -0.744 1.195 sum 2.390 -11.977 0.370 12.219 Atomic orbital electron populations 1.69859 1.09198 1.31067 1.34207 1.26825 0.95452 1.04824 0.90931 0.85114 0.79578 0.75857 0.78992 1.17759 1.19101 1.18819 1.19926 0.98518 0.91899 1.41064 0.89580 1.17567 0.90669 0.93221 0.88528 1.21317 1.01813 0.96219 1.04336 1.17650 0.85515 0.95321 0.93564 1.91353 1.53418 1.97575 1.71685 1.20464 1.01748 0.95841 1.08218 1.17890 0.95495 0.90264 0.97792 1.18664 0.99199 0.94789 0.89932 1.21526 0.96418 0.89276 1.01875 1.17761 0.99286 0.90041 0.85251 1.84856 1.42610 1.40676 1.61192 1.17746 1.05022 0.81370 0.91765 1.91535 1.86471 1.42054 1.89470 1.17250 1.07949 0.93488 0.78970 1.91534 1.92291 1.95596 1.30726 1.17561 1.04395 0.84089 0.87877 1.91560 1.92541 1.57647 1.68666 1.21210 1.03951 0.91771 1.05704 0.89714 0.87053 0.84163 0.80143 0.71491 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.47 10.96 21.82 0.24 -41.23 16 2 C 0.04 1.74 5.14 85.25 0.44 2.18 16 3 Si 0.98 36.46 29.59 68.60 2.03 38.49 16 4 H -0.25 -9.15 7.11 99.48 0.71 -8.45 16 5 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 6 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.49 -24.81 9.05 23.47 0.21 -24.60 16 8 H 0.09 4.21 7.90 -2.91 -0.02 4.18 16 9 C 0.10 5.26 5.56 -21.32 -0.12 5.14 16 10 C -0.22 -11.05 8.66 22.80 0.20 -10.85 16 11 C 0.10 4.49 7.28 22.29 0.16 4.66 16 12 F -0.16 -7.06 17.26 44.97 0.78 -6.28 16 13 C -0.24 -9.52 9.49 22.72 0.22 -9.30 16 14 C -0.01 -0.55 5.31 -20.10 -0.11 -0.66 16 15 C -0.02 -0.76 5.47 -20.01 -0.11 -0.87 16 16 C -0.07 -1.66 9.44 22.58 0.21 -1.45 16 17 C 0.12 2.52 6.70 22.48 0.15 2.67 16 18 O -0.48 -7.38 13.36 -93.54 -1.25 -8.63 16 19 C 0.06 1.50 7.31 22.52 0.16 1.66 16 20 F -0.12 -2.84 17.01 44.97 0.76 -2.07 16 21 C 0.04 1.27 7.30 22.40 0.16 1.44 16 22 F -0.12 -3.71 17.08 44.97 0.77 -2.94 16 23 C 0.08 2.62 7.15 22.62 0.16 2.78 16 24 F -0.13 -4.78 15.78 44.97 0.71 -4.07 16 25 C -0.21 -9.44 8.59 22.96 0.20 -9.24 16 26 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 27 H 0.11 6.04 6.18 -2.91 -0.02 6.02 16 28 H 0.14 4.47 8.04 -2.91 -0.02 4.44 16 29 H 0.18 3.40 8.04 -2.91 -0.02 3.37 16 30 H 0.42 1.93 9.06 -74.06 -0.67 1.25 16 31 H 0.10 4.61 7.76 -2.91 -0.02 4.58 16 Total: -1.00 -59.29 300.11 6.55 -52.74 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.57 Total: 10.44 kcal Atomic # 6 Polarization: -38.38 SS G_CDS: 1.94 Total: -36.44 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.24 Total: -41.23 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -1.25 Total: -8.63 kcal Atomic # 9 Polarization: -18.39 SS G_CDS: 3.02 Total: -15.37 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -59.29 6.55 -52.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245638708.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.965 kcal (2) G-P(sol) polarization free energy of solvation -59.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds