Wall clock time and date at job start Tue Mar 31 2020 10:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47352 * 2 1 4 4 H 1.08995 * 109.46965 * 54.64366 * 3 2 1 5 5 C 1.50698 * 109.47368 * 174.64283 * 3 2 1 6 6 H 1.08003 * 120.00230 * 119.99355 * 5 3 2 7 7 C 1.37883 * 120.00012 * 300.00349 * 5 3 2 8 8 N 1.31509 * 119.99879 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99761 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47065 * 90.00549 * 9 7 5 11 11 H 1.48495 * 109.47173 * 210.00276 * 9 7 5 12 12 H 1.48502 * 109.47407 * 330.00440 * 9 7 5 13 13 N 1.46904 * 109.47077 * 294.64114 * 3 2 1 14 14 C 1.46903 * 110.99657 * 153.98909 * 13 3 2 15 15 C 1.50705 * 109.46653 * 176.30303 * 14 13 3 16 16 C 1.38654 * 120.41377 * 259.72118 * 15 14 13 17 17 C 1.38720 * 118.41132 * 179.78201 * 16 15 14 18 18 Br 1.89097 * 120.42925 * 180.21942 * 17 16 15 19 19 C 1.38325 * 119.13897 * 0.47522 * 17 16 15 20 20 N 1.31851 * 120.75080 * 359.76772 * 19 17 16 21 21 C 1.31883 * 121.73148 * 359.97438 * 20 19 17 22 22 C 1.50698 * 119.60217 * 179.97438 * 21 20 19 23 23 H 1.09002 * 109.47144 * 306.38017 * 1 2 3 24 24 H 1.09006 * 109.46626 * 66.37779 * 1 2 3 25 25 H 1.08992 * 109.47324 * 186.37623 * 1 2 3 26 26 H 1.09000 * 109.47257 * 240.00045 * 2 1 3 27 27 H 1.09001 * 109.47003 * 119.99910 * 2 1 3 28 28 H 0.97004 * 119.99460 * 179.97438 * 8 7 5 29 29 H 1.00898 * 110.99712 * 30.03878 * 13 3 2 30 30 H 1.09001 * 109.47093 * 56.30922 * 14 13 3 31 31 H 1.08993 * 109.47146 * 296.30358 * 14 13 3 32 32 H 1.07999 * 120.79605 * 0.02562 * 16 15 14 33 33 H 1.08001 * 119.62222 * 179.74570 * 19 17 16 34 34 H 1.08997 * 109.47772 * 269.97846 * 22 21 20 35 35 H 1.08997 * 109.47308 * 29.98108 * 22 21 20 36 36 H 1.08999 * 109.47227 * 149.97719 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6005 1.9832 0.8381 5 6 3.5412 1.4446 0.1326 6 1 4.1511 1.8874 -0.6409 7 6 4.1361 0.8809 1.2415 8 7 5.4461 0.8823 1.3570 9 14 3.0812 0.1153 2.5796 10 1 2.8612 -1.3214 2.2751 11 1 3.7713 0.2439 3.8882 12 1 1.7726 0.8147 2.6392 13 7 1.6589 2.0967 -1.2589 14 6 1.5558 3.5518 -1.0858 15 6 1.2531 4.1955 -2.4144 16 6 2.2639 4.7939 -3.1510 17 6 1.9396 5.3699 -4.3705 18 35 3.2745 6.1961 -5.4247 19 6 0.6261 5.3367 -4.8030 20 7 -0.3098 4.7628 -4.0729 21 6 -0.0363 4.2012 -2.9113 22 6 -1.1436 3.5591 -2.1159 23 1 -0.3633 0.6096 0.8274 24 1 -0.3633 0.4118 -0.9416 25 1 -0.3633 -1.0212 0.1141 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8645 0.4860 2.1373 29 1 0.7978 1.7135 -1.6192 30 1 2.4989 3.9396 -0.7007 31 1 0.7552 3.7781 -0.3816 32 1 3.2802 4.8079 -2.7858 33 1 0.3642 5.7864 -5.7494 34 1 -1.5883 4.2983 -1.4496 35 1 -1.9055 3.1779 -2.7958 36 1 -0.7380 2.7365 -1.5269 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255158564.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:30 Heat of formation + Delta-G solvation = 15.522823 kcal Electronic energy + Delta-G solvation = -18178.770222 eV Core-core repulsion = 15322.171611 eV Total energy + Delta-G solvation = -2856.598611 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 312.053 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.54266 -38.50103 -35.35942 -34.60138 -34.04205 -32.09367 -31.60620 -29.20523 -28.24315 -26.47481 -24.29472 -23.58814 -22.28761 -21.70053 -18.86761 -17.99880 -17.52255 -17.07343 -16.62455 -15.97732 -15.61748 -15.37687 -14.87062 -14.52430 -14.25317 -14.08521 -13.82888 -13.70016 -13.56540 -13.18087 -13.14044 -12.90690 -12.53865 -12.32665 -12.16331 -12.09802 -11.69665 -11.45773 -11.29811 -11.20880 -10.73593 -10.61907 -10.56545 -9.73586 -9.07873 -8.25122 -6.27134 -0.21416 0.07973 0.47351 1.31512 1.36177 1.46357 2.33571 2.49864 3.08192 3.23530 3.45221 3.72036 3.73905 3.79460 3.97041 4.28417 4.31703 4.37702 4.47520 4.50835 4.60985 4.71006 4.77166 4.86345 4.92376 5.03315 5.09697 5.12897 5.19521 5.23216 5.44254 5.50553 5.73026 6.04090 6.46057 6.76061 6.79752 6.90951 7.37502 8.92142 Molecular weight = 312.05amu Principal moments of inertia in cm(-1) A = 0.018908 B = 0.004044 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.538294 B = 6922.924006 C = 8150.697989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.138 4.138 3 C 0.196 3.804 4 H 0.004 0.996 5 C -0.499 4.499 6 H 0.032 0.968 7 C 0.007 3.993 8 N -0.952 5.952 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.303 1.303 12 H -0.242 1.242 13 N -0.678 5.678 14 C 0.112 3.888 15 C -0.123 4.123 16 C -0.039 4.039 17 C -0.156 4.156 18 Br -0.028 7.028 19 C 0.131 3.869 20 N -0.487 5.487 21 C 0.143 3.857 22 C -0.108 4.108 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.040 0.960 28 H 0.263 0.737 29 H 0.336 0.664 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.137 0.863 33 H 0.188 0.812 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.532 9.505 -11.212 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C 0.087 3.913 4 H 0.022 0.978 5 C -0.538 4.538 6 H 0.050 0.950 7 C -0.189 4.189 8 N -0.594 5.594 9 Si 0.775 3.225 10 H -0.194 1.194 11 H -0.231 1.231 12 H -0.166 1.166 13 N -0.312 5.312 14 C -0.018 4.018 15 C -0.126 4.126 16 C -0.066 4.066 17 C -0.238 4.238 18 Br 0.056 6.944 19 C -0.029 4.029 20 N -0.196 5.196 21 C 0.005 3.995 22 C -0.165 4.165 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.157 0.843 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.205 0.795 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.133 9.767 -12.035 20.315 hybrid contribution 0.554 -0.480 1.686 1.839 sum -12.578 9.287 -10.349 18.750 Atomic orbital electron populations 1.21877 0.94115 1.02638 1.02219 1.22027 0.96582 0.98095 1.00846 1.19432 0.93605 0.91140 0.87120 0.97832 1.21301 0.91727 1.36294 1.04477 0.95003 1.25824 0.95862 0.96713 1.00517 1.70057 1.11064 1.47653 1.30582 0.85875 0.79696 0.79550 0.77413 1.19372 1.23100 1.16579 1.60372 1.38007 1.02266 1.30554 1.20656 1.00964 0.88636 0.91528 1.20760 0.93776 0.99694 0.98365 1.21619 1.00313 0.92631 0.92072 1.22969 0.95912 1.06880 0.98012 1.96717 1.50894 1.78965 1.67825 1.23151 0.86408 0.93920 0.99385 1.67739 1.35807 1.10013 1.06078 1.21634 0.93764 0.92956 0.91152 1.20911 0.95526 1.00738 0.99351 0.92653 0.91128 0.91359 0.92170 0.94149 0.92772 0.84255 0.91885 0.92677 0.84528 0.79532 0.88430 0.88826 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 9.63 71.98 0.69 -3.49 16 2 C -0.14 -5.31 5.01 30.60 0.15 -5.16 16 3 C 0.20 8.50 1.62 44.17 0.07 8.58 16 4 H 0.00 0.18 6.89 -2.39 -0.02 0.16 16 5 C -0.50 -27.91 9.19 25.60 0.24 -27.68 16 6 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 7 C 0.01 0.42 5.45 84.66 0.46 0.88 16 8 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 9 Si 0.95 43.72 24.41 68.60 1.67 45.39 16 10 H -0.27 -11.79 6.83 99.48 0.68 -11.11 16 11 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 12 H -0.24 -10.07 6.53 99.48 0.65 -9.42 16 13 N -0.68 -25.25 6.26 -499.45 -3.13 -28.37 16 14 C 0.11 3.71 4.83 85.56 0.41 4.13 16 15 C -0.12 -3.61 5.44 -19.78 -0.11 -3.72 16 16 C -0.04 -1.14 9.59 22.48 0.22 -0.92 16 17 C -0.16 -3.98 6.25 22.41 0.14 -3.84 16 18 Br -0.03 -0.64 33.74 -20.37 -0.69 -1.32 16 19 C 0.13 3.06 10.95 84.71 0.93 3.99 16 20 N -0.49 -12.50 10.27 -183.81 -1.89 -14.38 16 21 C 0.14 3.69 6.78 42.54 0.29 3.98 16 22 C -0.11 -2.12 9.42 71.24 0.67 -1.45 16 23 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 1.65 6.67 -2.38 -0.02 1.63 16 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.04 1.68 3.22 -2.39 -0.01 1.67 16 28 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 29 H 0.34 10.54 4.82 -89.70 -0.43 10.11 16 30 H 0.06 2.44 7.87 -2.39 -0.02 2.43 16 31 H 0.06 1.61 7.28 -2.39 -0.02 1.59 16 32 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.19 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 1.53 5.20 -2.39 -0.01 1.52 16 Total: -1.00 -65.75 308.37 1.01 -64.73 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.58 Total: 17.90 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 4.16 Total: -24.72 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -4.71 Total: -101.98 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.67 Total: 45.39 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -0.69 Total: -1.32 kcal Total: -65.75 1.01 -64.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158564.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.256 kcal (2) G-P(sol) polarization free energy of solvation -65.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds