Wall clock time and date at job start Tue Mar 31 2020 09:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99659 * 2 1 4 4 H 1.48502 * 109.47393 * 240.00018 * 3 2 1 5 5 H 1.48498 * 109.47397 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46912 * 120.00752 * 3 2 1 7 7 C 1.37866 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00267 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00165 * 359.97438 * 7 2 1 10 10 C 1.53041 * 109.46436 * 180.02562 * 9 7 2 11 11 C 1.53190 * 109.31206 * 181.37221 * 10 9 7 12 12 N 1.46927 * 108.89718 * 305.29262 * 11 10 9 13 13 C 1.34775 * 120.63364 * 233.68473 * 12 11 10 14 14 O 1.21573 * 119.99787 * 356.18027 * 13 12 11 15 15 C 1.47727 * 120.00067 * 176.18087 * 13 12 11 16 16 C 1.39543 * 120.52442 * 50.15368 * 15 13 12 17 17 N 1.31666 * 120.62220 * 179.97438 * 16 15 13 18 18 C 1.32152 * 121.85741 * 0.02562 * 17 16 15 19 19 F 1.35094 * 119.50388 * 180.02562 * 18 17 16 20 20 C 1.38826 * 120.99847 * 359.97438 * 18 17 16 21 21 Cl 1.73596 * 120.37122 * 180.02562 * 20 18 17 22 22 C 1.38302 * 119.26016 * 359.72408 * 20 18 17 23 23 C 1.47201 * 118.55201 * 53.54175 * 12 11 10 24 24 C 1.53041 * 109.45123 * 300.06666 * 9 7 2 25 25 H 0.96999 * 120.00465 * 359.97438 * 1 2 3 26 26 H 1.09010 * 109.46080 * 60.02844 * 9 7 2 27 27 H 1.08999 * 109.49589 * 61.42299 * 10 9 7 28 28 H 1.08997 * 109.49791 * 301.32277 * 10 9 7 29 29 H 1.08998 * 109.58839 * 65.15377 * 11 10 9 30 30 H 1.09011 * 109.58638 * 185.43465 * 11 10 9 31 31 H 1.07999 * 119.69189 * 359.97438 * 16 15 13 32 32 H 1.08001 * 120.84385 * 180.27375 * 22 20 18 33 33 H 1.09000 * 109.53473 * 186.68035 * 23 12 11 34 34 H 1.09000 * 109.68075 * 66.36621 * 23 12 11 35 35 H 1.09002 * 109.49602 * 298.57186 * 24 9 7 36 36 H 1.09003 * 109.49767 * 58.66107 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2458 -3.6621 -0.0005 11 6 1.4768 -4.9865 -0.0352 12 7 0.5228 -5.0122 1.0820 13 6 0.5147 -6.0391 1.9548 14 8 1.2538 -6.9889 1.7826 15 6 -0.3921 -6.0107 3.1206 16 6 -1.7490 -5.7294 2.9563 17 7 -2.5591 -5.7040 3.9939 18 6 -2.1286 -5.9402 5.2208 19 9 -3.0017 -5.9024 6.2511 20 6 -0.7929 -6.2277 5.4670 21 17 -0.2452 -6.5360 7.0852 22 6 0.0953 -6.2718 4.4078 23 6 -0.4201 -3.8912 1.2279 24 6 0.3707 -2.5793 1.2487 25 1 -0.4851 0.8400 0.0004 26 1 0.6245 -2.5567 -0.8907 27 1 2.8558 -3.6191 0.9018 28 1 2.8882 -3.5914 -0.8782 29 1 0.9372 -5.0712 -0.9784 30 1 2.1756 -5.8175 0.0619 31 1 -2.1384 -5.5306 1.9687 32 1 1.1391 -6.4973 4.5695 33 1 -0.9731 -3.9992 2.1610 34 1 -1.1161 -3.8854 0.3891 35 1 0.9986 -2.5466 2.1390 36 1 -0.3218 -1.7376 1.2604 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935317841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:47 Heat of formation + Delta-G solvation = -45.346734 kcal Electronic energy + Delta-G solvation = -23418.127404 eV Core-core repulsion = 19649.856672 eV Total energy + Delta-G solvation = -3768.270732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 312.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.41427 -41.00749 -39.27078 -37.09516 -37.00676 -33.73641 -33.06389 -32.03478 -30.79461 -30.05517 -26.57188 -24.78574 -24.52928 -22.93595 -22.40942 -20.48001 -18.94906 -18.45709 -18.13170 -17.36416 -16.60344 -16.38601 -15.94323 -15.42588 -14.95867 -14.62679 -14.60539 -14.07280 -13.71906 -13.69804 -13.35635 -13.19920 -12.86990 -12.81232 -12.47784 -12.43135 -11.74797 -11.63317 -11.42423 -10.98820 -10.75686 -10.53841 -10.52831 -10.26551 -10.19892 -9.83199 -9.68157 -9.30837 -9.25453 -9.00065 -8.47644 -8.23664 -6.11126 -4.17543 0.13751 0.50675 1.47144 2.53520 2.94678 3.00139 3.24752 3.25655 3.30569 3.33211 3.89152 4.23162 4.29982 4.34767 4.67997 4.88177 5.18047 5.24016 5.36097 5.42777 5.64277 5.76470 5.86146 5.89435 5.99772 6.10601 6.26510 6.49753 6.70412 6.88406 6.96892 7.02834 7.12713 7.53180 7.63021 7.80122 7.93000 8.16289 8.30425 8.85525 9.48353 10.94495 Molecular weight = 312.08amu Principal moments of inertia in cm(-1) A = 0.016404 B = 0.003693 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.529417 B = 7579.889846 C = 8227.322078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.112 3.888 12 N -0.587 5.587 13 C 0.561 3.439 14 O -0.542 6.542 15 C -0.166 4.166 16 C 0.176 3.824 17 N -0.495 5.495 18 C 0.335 3.665 19 F -0.096 7.096 20 C -0.121 4.121 21 Cl -0.029 7.029 22 C 0.008 3.992 23 C 0.092 3.908 24 C -0.124 4.124 25 H 0.262 0.738 26 H 0.029 0.971 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.185 0.815 32 H 0.164 0.836 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 -11.597 8.236 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.010 4.010 12 N -0.318 5.318 13 C 0.346 3.654 14 O -0.420 6.420 15 C -0.172 4.172 16 C 0.018 3.982 17 N -0.209 5.209 18 C 0.181 3.819 19 F -0.075 7.075 20 C -0.151 4.151 21 Cl 0.000 7.000 22 C -0.018 4.018 23 C -0.030 4.030 24 C -0.163 4.163 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.201 0.799 32 H 0.181 0.819 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.067 -11.788 8.198 14.924 hybrid contribution 1.073 0.919 0.567 1.522 sum -2.994 -10.869 8.765 14.280 Atomic orbital electron populations 1.69802 1.05855 1.26742 1.50629 1.24942 0.94871 0.99080 0.94926 0.86675 0.79657 0.83134 0.78656 1.20254 1.21262 1.20331 1.21142 0.92945 0.90501 1.50693 0.92694 1.18643 0.92624 0.91816 0.93905 1.22028 0.98964 0.93963 1.01276 1.21809 0.91597 1.00049 0.87505 1.48286 1.35818 1.20339 1.27350 1.17756 0.82633 0.83069 0.81902 1.90791 1.42189 1.33754 1.75306 1.21062 0.96092 1.04979 0.95078 1.23012 0.88135 0.89783 0.97262 1.67238 1.39209 1.16810 0.97665 1.18011 0.83786 0.95898 0.84221 1.91684 1.68883 1.92807 1.54096 1.21575 0.93262 1.10545 0.89751 1.98411 1.89457 1.94025 1.18133 1.21466 1.00807 0.90721 0.88811 1.22432 0.91946 0.87707 1.00884 1.22045 1.00131 0.94296 0.99791 0.92812 0.95252 0.92839 0.91758 0.91546 0.90036 0.79863 0.81856 0.91434 0.90916 0.94141 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.50 11.31 55.43 0.63 -22.88 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.51 -13.07 8.56 -34.44 -0.29 -13.36 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.05 1.07 2.06 -91.73 -0.19 0.88 16 10 C -0.12 -2.32 5.30 -26.61 -0.14 -2.46 16 11 C 0.11 1.81 6.41 -3.71 -0.02 1.79 16 12 N -0.59 -9.27 2.98 -173.70 -0.52 -9.79 16 13 C 0.56 8.66 7.27 -12.38 -0.09 8.57 16 14 O -0.54 -9.73 16.47 5.30 0.09 -9.64 16 15 C -0.17 -2.17 5.03 -104.83 -0.53 -2.70 16 16 C 0.18 2.12 8.55 -17.14 -0.15 1.97 16 17 N -0.50 -6.43 10.36 -13.20 -0.14 -6.56 16 18 C 0.33 4.20 8.39 -17.20 -0.14 4.05 16 19 F -0.10 -1.19 16.86 2.25 0.04 -1.15 16 20 C -0.12 -1.40 6.34 -39.34 -0.25 -1.65 16 21 Cl -0.03 -0.30 28.64 -51.86 -1.49 -1.79 16 22 C 0.01 0.10 9.69 -38.86 -0.38 -0.28 16 23 C 0.09 1.45 5.38 -3.56 -0.02 1.44 16 24 C -0.12 -2.53 5.15 -26.61 -0.14 -2.67 16 25 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 26 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.30 7.02 -51.92 -0.36 0.94 16 31 H 0.18 1.85 7.03 -52.49 -0.37 1.48 16 32 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.07 0.95 4.56 -51.93 -0.24 0.71 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.11 2.48 6.03 -51.93 -0.31 2.16 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -27.46 318.52 -7.83 -35.29 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -3.78 Total: -0.62 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.43 Total: -2.88 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: -0.03 Total: -39.22 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.49 Total: -1.79 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.46 -7.83 -35.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935317841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.058 kcal (2) G-P(sol) polarization free energy of solvation -27.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds