Wall clock time and date at job start Tue Mar 31 2020 10:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47746 * 2 1 4 4 C 1.50702 * 109.46880 * 120.00453 * 2 1 3 5 5 O 1.20826 * 120.00303 * 119.99561 * 4 2 1 6 6 O 1.34228 * 119.99603 * 299.99284 * 4 2 1 7 7 C 1.45206 * 117.00001 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47091 * 179.97438 * 7 6 4 9 9 O 1.42905 * 109.46911 * 65.00251 * 8 7 6 10 10 C 1.42897 * 114.00040 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47146 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00154 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99853 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00071 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99974 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47237 * 89.99097 * 15 13 11 17 17 H 1.48500 * 109.47140 * 209.99379 * 15 13 11 18 18 H 1.48503 * 109.47118 * 329.99685 * 15 13 11 19 19 C 1.50704 * 109.46954 * 239.99340 * 2 1 3 20 20 C 1.38233 * 119.99169 * 299.73541 * 19 2 1 21 21 C 1.38214 * 120.01653 * 179.72574 * 20 19 2 22 22 C 1.38355 * 119.98313 * 0.54065 * 21 20 19 23 23 Cl 1.73601 * 120.01266 * 179.70633 * 22 21 20 24 24 C 1.38351 * 119.97349 * 359.73402 * 22 21 20 25 25 C 1.38209 * 119.98663 * 359.97438 * 24 22 21 26 26 H 1.09007 * 109.46672 * 60.00013 * 1 2 3 27 27 H 1.08994 * 109.47746 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46635 * 300.00697 * 1 2 3 29 29 H 1.09001 * 109.47157 * 299.99890 * 7 6 4 30 30 H 1.09004 * 109.47122 * 60.00023 * 7 6 4 31 31 H 1.09003 * 109.47073 * 184.99607 * 8 7 6 32 32 H 1.08993 * 109.47403 * 305.00248 * 8 7 6 33 33 H 1.08999 * 109.47446 * 300.00155 * 10 9 8 34 34 H 1.09005 * 109.47036 * 60.00044 * 10 9 8 35 35 H 0.96998 * 120.00311 * 180.02562 * 14 13 11 36 36 H 1.08010 * 119.99434 * 359.97438 * 20 19 2 37 37 H 1.07996 * 120.01223 * 180.27111 * 21 20 19 38 38 H 1.08000 * 120.00688 * 179.97438 * 24 22 21 39 39 H 1.08006 * 119.99581 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7269 -1.6930 1.1196 6 8 1.7081 -0.2519 2.4495 7 6 2.2276 -0.9858 3.5897 8 6 1.7565 -0.3185 4.8834 9 8 0.3348 -0.4227 4.9828 10 6 -0.2106 0.1719 6.1622 11 6 -1.7082 0.0049 6.1625 12 1 -2.1949 -0.5048 5.3441 13 6 -2.4572 0.5028 7.2076 14 7 -1.8645 1.1230 8.2044 15 14 -4.3136 0.2951 7.2084 16 1 -4.6691 -0.9775 7.8862 17 1 -4.9386 1.4321 7.9308 18 1 -4.8090 0.2655 5.8088 19 6 2.0323 -0.7106 -1.2304 20 6 1.7028 -2.0356 -1.4461 21 6 2.1585 -2.6862 -2.5772 22 6 2.9539 -2.0141 -3.4881 23 17 3.5330 -2.8327 -4.9053 24 6 3.2881 -0.6896 -3.2689 25 6 2.8268 -0.0384 -2.1405 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5140 0.8900 29 1 1.8640 -2.0129 3.5569 30 1 3.3171 -0.9848 3.5566 31 1 2.2177 -0.8151 5.7372 32 1 2.0441 0.7328 4.8756 33 1 0.2098 -0.3147 7.0422 34 1 0.0362 1.2335 6.1813 35 1 -2.3914 1.4729 8.9399 36 1 1.0857 -2.5616 -0.7325 37 1 1.8973 -3.7201 -2.7478 38 1 3.9094 -0.1646 -3.9794 39 1 3.0873 0.9957 -1.9694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845335292.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:16 Heat of formation + Delta-G solvation = -127.164762 kcal Electronic energy + Delta-G solvation = -22504.364260 eV Core-core repulsion = 18823.713185 eV Total energy + Delta-G solvation = -3680.651074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.096 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81556 -39.43327 -37.20918 -36.78012 -36.02519 -34.40160 -32.79345 -31.39648 -30.29448 -29.40065 -26.97784 -25.19200 -23.28631 -23.01217 -22.38860 -21.77534 -20.30159 -17.65757 -17.49966 -16.78737 -16.53477 -16.24826 -15.87749 -15.27445 -15.21666 -14.67824 -14.40670 -14.15725 -13.86141 -13.83997 -13.60124 -13.27402 -12.79451 -12.70356 -12.37647 -12.10223 -11.95779 -11.77750 -11.53669 -11.45293 -11.33690 -11.09333 -10.95637 -10.86833 -10.77997 -10.41521 -10.29873 -10.06731 -9.31250 -9.16040 -8.92113 -8.89339 -8.24423 -6.14610 -4.16405 0.77164 1.01328 1.82174 2.21512 2.69332 3.28117 3.33272 3.38331 3.38429 4.18940 4.29740 4.38718 4.57415 4.67065 4.73272 4.85357 4.90871 5.03594 5.15239 5.19288 5.22000 5.36347 5.42274 5.53968 5.63837 5.64512 5.83196 5.85917 5.89529 5.91874 6.03279 6.09158 6.21401 6.45468 6.57069 7.02378 7.36715 7.74940 7.80160 8.09560 8.49077 8.95968 9.48392 10.96882 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.027019 B = 0.002218 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.042387 B =12619.220157 C =13111.735703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 H 0.118 0.882 4 C 0.463 3.537 5 O -0.508 6.508 6 O -0.337 6.337 7 C 0.074 3.926 8 C 0.062 3.938 9 O -0.390 6.390 10 C 0.194 3.806 11 C -0.515 4.515 12 H 0.067 0.933 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.909 3.091 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.069 4.069 20 C -0.071 4.071 21 C -0.111 4.111 22 C -0.033 4.033 23 Cl -0.075 7.075 24 C -0.114 4.114 25 C -0.096 4.096 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.264 0.736 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.717 -2.689 -22.681 25.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.063 4.063 3 H 0.136 0.864 4 C 0.306 3.694 5 O -0.397 6.397 6 O -0.253 6.253 7 C 0.001 3.999 8 C -0.016 4.016 9 O -0.310 6.310 10 C 0.120 3.880 11 C -0.553 4.553 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.736 3.264 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.069 4.069 20 C -0.089 4.089 21 C -0.129 4.129 22 C -0.059 4.059 23 Cl -0.046 7.046 24 C -0.132 4.132 25 C -0.114 4.114 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.817 -3.058 -22.752 25.378 hybrid contribution -0.508 -0.128 0.374 0.644 sum 10.310 -3.186 -22.378 24.844 Atomic orbital electron populations 1.21835 0.90399 1.03649 1.04275 1.19958 0.98968 1.00179 0.87151 0.86408 1.23439 0.77563 0.83051 0.85359 1.90668 1.35680 1.25843 1.87467 1.86590 1.69155 1.55095 1.14442 1.23229 0.97821 0.96342 0.82520 1.22322 0.86319 0.99540 0.93434 1.87912 1.16354 1.80382 1.46395 1.20238 0.94128 0.92240 0.81379 1.21035 0.90603 1.37006 1.06651 0.91518 1.24956 0.99503 0.94997 0.95085 1.69955 1.36064 1.37914 1.09805 0.86326 0.84062 0.77722 0.78323 1.20462 1.21055 1.19598 1.19476 0.97945 0.94461 0.95036 1.20952 0.98373 0.93713 0.95908 1.21031 0.97750 1.00535 0.93633 1.20960 1.00681 0.93711 0.90554 1.98370 1.87771 1.79146 1.39356 1.20974 1.00961 0.92824 0.98463 1.20984 0.96667 1.00230 0.93508 0.90849 0.91741 0.89687 0.90489 0.90464 0.91954 0.93182 0.97632 0.97484 0.92614 0.85083 0.84834 0.84833 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.94 37.16 0.33 -1.08 16 2 C -0.04 -0.45 3.01 -92.92 -0.28 -0.73 16 3 H 0.12 0.95 7.88 -51.93 -0.41 0.54 16 4 C 0.46 6.43 7.12 36.01 0.26 6.69 16 5 O -0.51 -8.03 14.84 -18.75 -0.28 -8.31 16 6 O -0.34 -5.32 10.09 -42.02 -0.42 -5.75 16 7 C 0.07 1.14 5.85 37.16 0.22 1.36 16 8 C 0.06 1.09 6.33 37.16 0.24 1.33 16 9 O -0.39 -9.23 10.30 -38.79 -0.40 -9.63 16 10 C 0.19 5.22 5.69 36.00 0.20 5.43 16 11 C -0.51 -14.95 9.43 -34.44 -0.32 -15.27 16 12 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 15 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.07 -0.70 4.40 -104.62 -0.46 -1.16 16 20 C -0.07 -0.75 7.92 -39.59 -0.31 -1.07 16 21 C -0.11 -1.08 9.83 -39.55 -0.39 -1.47 16 22 C -0.03 -0.31 6.32 -39.50 -0.25 -0.56 16 23 Cl -0.08 -0.67 28.96 -51.86 -1.50 -2.17 16 24 C -0.11 -0.97 9.83 -39.55 -0.39 -1.36 16 25 C -0.10 -0.82 9.67 -39.59 -0.38 -1.20 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.64 7.40 -51.93 -0.38 0.26 16 28 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 29 H 0.08 1.21 8.13 -51.93 -0.42 0.79 16 30 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.13 1.39 7.52 -52.48 -0.39 0.99 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.13 0.82 7.95 -52.48 -0.42 0.40 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -32.60 356.20 -8.54 -41.14 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -5.38 Total: -3.82 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.64 Total: -7.59 kcal Atomic # 7 Polarization: -26.50 SS G_CDS: 0.74 Total: -25.76 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -1.10 Total: -23.69 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.60 -8.54 -41.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845335292.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.025 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds