Wall clock time and date at job start Tue Mar 31 2020 10:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.87798 * 2 1 4 4 C 1.54322 * 109.88244 * 238.98660 * 2 1 3 5 5 C 1.55162 * 102.94560 * 218.38976 * 4 2 1 6 6 H 1.08996 * 111.00704 * 153.60654 * 5 4 2 7 7 N 1.46494 * 111.00218 * 277.42973 * 5 4 2 8 8 C 1.36945 * 119.99542 * 204.99423 * 7 5 4 9 9 H 1.07999 * 120.00259 * 0.02562 * 8 7 5 10 10 C 1.38819 * 119.99631 * 179.97438 * 8 7 5 11 11 N 1.31619 * 119.99847 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99833 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47271 * 270.00600 * 12 10 8 14 14 H 1.48507 * 109.47153 * 30.00115 * 12 10 8 15 15 H 1.48497 * 109.47302 * 150.00378 * 12 10 8 16 16 C 1.54916 * 101.57820 * 35.49963 * 5 4 2 17 17 N 1.47020 * 109.88371 * 121.17865 * 2 1 3 18 18 C 1.34778 * 125.64825 * 298.30938 * 17 2 1 19 19 O 1.21608 * 120.00042 * 354.38849 * 18 17 2 20 20 C 1.47384 * 119.99800 * 174.37981 * 18 17 2 21 21 C 1.38065 * 126.42609 * 352.94002 * 20 18 17 22 22 N 1.34234 * 107.43590 * 179.86955 * 21 20 18 23 23 C 1.46500 * 125.73704 * 180.14199 * 22 21 20 24 24 N 1.39934 * 108.52504 * 0.39165 * 22 21 20 25 25 C 1.30524 * 108.89453 * 359.74967 * 24 22 21 26 26 Cl 1.73602 * 126.00707 * 179.97438 * 25 24 22 27 27 H 1.09002 * 109.47284 * 181.01359 * 1 2 3 28 28 H 1.08999 * 109.46955 * 301.01089 * 1 2 3 29 29 H 1.09007 * 109.47039 * 61.01161 * 1 2 3 30 30 H 1.09000 * 110.72362 * 100.02708 * 4 2 1 31 31 H 1.09002 * 110.72062 * 336.75091 * 4 2 1 32 32 H 0.96999 * 120.00591 * 24.99596 * 7 5 4 33 33 H 0.96998 * 120.00322 * 359.97438 * 11 10 8 34 34 H 1.09003 * 110.36228 * 81.83115 * 16 5 4 35 35 H 1.09000 * 110.36899 * 204.15084 * 16 5 4 36 36 H 1.08002 * 126.28210 * 0.02562 * 21 20 18 37 37 H 1.09004 * 109.47269 * 270.31582 * 23 22 21 38 38 H 1.09008 * 109.47318 * 30.31352 * 23 22 21 39 39 H 1.09006 * 109.47213 * 150.31449 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7477 -1.2438 5 6 3.2876 -1.5133 -0.6946 6 1 3.4855 -2.4089 -1.2834 7 7 4.4673 -0.6459 -0.6503 8 6 5.7217 -1.1931 -0.7004 9 1 5.8412 -2.2640 -0.7729 10 6 6.8396 -0.3712 -0.6590 11 7 6.6939 0.9340 -0.5711 12 14 8.5506 -1.1175 -0.7280 13 1 9.0201 -1.4077 0.6507 14 1 8.5097 -2.3778 -1.5124 15 1 9.4823 -0.1605 -1.3770 16 6 2.8145 -1.8805 0.7341 17 7 2.0300 -0.7158 1.1829 18 6 1.8087 -0.3647 2.4652 19 8 1.2321 0.6752 2.7200 20 6 2.2655 -1.2412 3.5585 21 6 2.8061 -2.5045 3.4249 22 7 3.0895 -2.9532 4.6579 23 6 3.6821 -4.2537 4.9801 24 7 2.7184 -1.9721 5.5842 25 6 2.2266 -0.9482 4.9412 26 17 1.6290 0.5157 5.6578 27 1 -0.3634 -1.0275 0.0182 28 1 -0.3633 0.5295 0.8808 29 1 -0.3633 0.4981 -0.8990 30 1 2.3529 -0.0431 -2.0202 31 1 1.3051 -1.4436 -1.6203 32 1 4.3601 0.3159 -0.5856 33 1 5.8054 1.3215 -0.5357 34 1 2.1886 -2.7725 0.7088 35 1 3.6716 -2.0359 1.3894 36 1 2.9730 -3.0336 2.4983 37 1 2.8899 -4.9891 5.1205 38 1 4.3307 -4.5699 4.1630 39 1 4.2666 -4.1697 5.8963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989664607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:28 Heat of formation + Delta-G solvation = 66.761684 kcal Electronic energy + Delta-G solvation = -24355.520327 eV Core-core repulsion = 20747.864037 eV Total energy + Delta-G solvation = -3607.656290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.52774 -39.58411 -37.25189 -36.62465 -34.29561 -33.33372 -32.22089 -31.37965 -29.89158 -28.25231 -27.15972 -25.70984 -23.71703 -23.24449 -21.53023 -21.13842 -20.15728 -19.09422 -17.54850 -16.84071 -16.54249 -16.02975 -15.74891 -15.14324 -14.94065 -14.56458 -14.07869 -13.87409 -13.68488 -13.37761 -13.30004 -13.08394 -12.83617 -12.60555 -12.33335 -11.94017 -11.79634 -11.66426 -11.54722 -11.09690 -10.90406 -10.76371 -10.67367 -10.55608 -10.30575 -10.08234 -9.50813 -9.45297 -9.27121 -9.08155 -8.78316 -8.23028 -7.15334 -6.19083 -3.21477 1.40471 1.43286 1.96263 2.63616 3.34759 3.44157 3.48786 3.63044 3.65461 4.28964 4.55078 4.57835 4.78443 4.85681 5.04747 5.11063 5.14846 5.22517 5.26139 5.33173 5.35334 5.56012 5.62021 5.68995 5.80613 5.84525 5.91411 6.04084 6.06189 6.31426 6.35570 6.47355 6.55991 6.58370 6.79099 7.22493 7.68687 7.92267 8.58850 8.66026 9.10663 9.97408 10.11609 11.28459 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.011197 B = 0.005160 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.030304 B = 5424.599252 C = 6525.126940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 H 0.073 0.927 4 C -0.140 4.140 5 C 0.175 3.825 6 H 0.075 0.925 7 N -0.722 5.722 8 C -0.342 4.342 9 H 0.067 0.933 10 C -0.039 4.039 11 N -0.937 5.937 12 Si 1.081 2.919 13 H -0.296 1.296 14 H -0.294 1.294 15 H -0.287 1.287 16 C 0.058 3.942 17 N -0.598 5.598 18 C 0.607 3.393 19 O -0.538 6.538 20 C -0.266 4.266 21 C 0.105 3.895 22 N -0.352 5.352 23 C 0.097 3.903 24 N -0.290 5.290 25 C 0.173 3.827 26 Cl 0.029 6.971 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.370 0.630 33 H 0.257 0.743 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.202 0.798 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.655 -11.277 6.266 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.091 0.909 4 C -0.179 4.179 5 C 0.063 3.937 6 H 0.093 0.907 7 N -0.362 5.362 8 C -0.472 4.472 9 H 0.085 0.915 10 C -0.238 4.238 11 N -0.581 5.581 12 Si 0.912 3.088 13 H -0.224 1.224 14 H -0.220 1.220 15 H -0.213 1.213 16 C -0.068 4.068 17 N -0.331 5.331 18 C 0.396 3.604 19 O -0.416 6.416 20 C -0.282 4.282 21 C -0.045 4.045 22 N -0.132 5.132 23 C -0.044 4.044 24 N -0.115 5.115 25 C -0.020 4.020 26 Cl 0.057 6.943 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.203 0.797 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.218 0.782 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.967 -11.050 7.690 16.176 hybrid contribution -1.774 0.192 -0.555 1.869 sum -10.741 -10.858 7.135 16.858 Atomic orbital electron populations 1.22122 0.95315 1.01751 1.02473 1.21431 0.93625 0.96669 0.84455 0.90890 1.23108 0.98283 1.00097 0.96454 1.21249 0.86703 0.94367 0.91422 0.90666 1.42344 1.00937 1.04693 1.88246 1.20026 0.84502 0.93310 1.49408 0.91548 1.25776 1.02680 0.95389 0.99963 1.70834 1.24812 1.10297 1.52144 0.83226 0.75207 0.74234 0.76154 1.22366 1.22045 1.21306 1.23666 0.94264 0.87531 1.01372 1.48151 1.52030 1.28657 1.04239 1.16653 0.78904 0.84471 0.80415 1.90764 1.43555 1.24150 1.83098 1.20109 1.17677 0.97259 0.93111 1.23925 0.95204 0.94805 0.90572 1.48185 1.46830 1.14411 1.03809 1.22089 0.98968 0.78845 1.04480 1.77156 1.21461 0.98096 1.14763 1.22602 0.98224 0.90608 0.90593 1.98413 1.84975 1.27739 1.83218 0.92860 0.91593 0.91976 0.89902 0.90613 0.79670 0.93109 0.92569 0.89979 0.78159 0.90003 0.88396 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.10 37.16 0.34 -1.82 16 2 C 0.14 2.24 3.42 -66.96 -0.23 2.01 16 3 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 4 C -0.14 -2.05 6.08 -24.89 -0.15 -2.20 16 5 C 0.18 3.03 3.72 -65.78 -0.24 2.78 16 6 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 7 N -0.72 -16.57 5.23 -51.35 -0.27 -16.84 16 8 C -0.34 -8.86 9.96 -15.05 -0.15 -9.01 16 9 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 10 C -0.04 -1.09 5.50 -17.43 -0.10 -1.19 16 11 N -0.94 -28.37 13.70 55.49 0.76 -27.61 16 12 Si 1.08 24.87 29.92 -169.99 -5.09 19.78 16 13 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 C 0.06 0.89 4.79 -2.53 -0.01 0.87 16 17 N -0.60 -10.07 3.06 -164.29 -0.50 -10.57 16 18 C 0.61 11.30 7.59 -12.54 -0.10 11.21 16 19 O -0.54 -11.24 15.02 5.27 0.08 -11.16 16 20 C -0.27 -4.50 6.06 -105.04 -0.64 -5.13 16 21 C 0.11 1.42 9.79 -16.56 -0.16 1.25 16 22 N -0.35 -4.43 3.98 -67.59 -0.27 -4.70 16 23 C 0.10 0.68 11.44 59.85 0.68 1.37 16 24 N -0.29 -4.53 12.50 33.18 0.41 -4.12 16 25 C 0.17 2.94 7.88 -16.91 -0.13 2.80 16 26 Cl 0.03 0.47 28.03 -51.86 -1.45 -0.99 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.02 7.10 -51.93 -0.37 0.65 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 32 H 0.37 9.21 6.70 -40.82 -0.27 8.94 16 33 H 0.26 7.77 6.77 -40.82 -0.28 7.49 16 34 H 0.06 0.67 7.73 -51.93 -0.40 0.26 16 35 H 0.08 1.36 5.94 -51.93 -0.31 1.05 16 36 H 0.20 2.16 4.83 -52.49 -0.25 1.91 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -34.25 337.91 -7.00 -41.25 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.88 Total: 6.92 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -0.89 Total: 2.95 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: 0.13 Total: -63.84 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -5.09 Total: 19.78 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -1.45 Total: -0.99 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.25 -7.00 -41.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989664607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.011 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds