Wall clock time and date at job start Tue Mar 31 2020 09:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30410 * 125.97881 * 2 1 4 4 N 1.39929 * 108.96432 * 179.97438 * 3 2 1 5 5 C 1.46500 * 125.75091 * 180.02562 * 4 3 2 6 6 C 1.34347 * 108.49409 * 359.72902 * 4 3 2 7 7 Cl 1.73602 * 126.31499 * 180.25705 * 6 4 3 8 8 C 1.38278 * 107.36762 * 0.43109 * 6 4 3 9 9 C 1.47296 * 126.43795 * 179.83593 * 8 6 4 10 10 O 1.21612 * 120.00044 * 269.68769 * 9 8 6 11 11 N 1.34781 * 119.99711 * 89.68472 * 9 8 6 12 12 C 1.46503 * 119.99611 * 180.02562 * 11 9 8 13 13 H 1.09001 * 112.85028 * 336.19481 * 12 11 9 14 14 C 1.53779 * 113.61483 * 107.50299 * 12 11 9 15 15 C 1.53784 * 87.08045 * 139.98067 * 14 12 11 16 16 H 1.09004 * 113.61451 * 220.02152 * 15 14 12 17 17 N 1.46496 * 113.61524 * 89.11591 * 15 14 12 18 18 C 1.36938 * 119.99833 * 107.50104 * 17 15 14 19 19 H 1.08001 * 120.00007 * 0.02562 * 18 17 15 20 20 C 1.38814 * 120.00036 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99771 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00257 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46647 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47083 * 120.00311 * 22 20 18 25 25 H 1.48494 * 109.46972 * 240.00401 * 22 20 18 26 26 C 1.53779 * 113.61085 * 205.00218 * 12 11 9 27 27 H 1.08998 * 109.47242 * 270.02458 * 1 2 3 28 28 H 1.08999 * 109.46771 * 30.02494 * 1 2 3 29 29 H 1.08993 * 109.47058 * 150.02231 * 1 2 3 30 30 H 1.09001 * 109.46970 * 89.97800 * 5 4 3 31 31 H 1.09000 * 109.46961 * 209.97508 * 5 4 3 32 32 H 1.08995 * 109.46986 * 329.97545 * 5 4 3 33 33 H 0.96998 * 120.00342 * 0.02562 * 11 9 8 34 34 H 1.09002 * 113.61557 * 25.43179 * 14 12 11 35 35 H 1.09004 * 113.61501 * 254.52599 * 14 12 11 36 36 H 0.96998 * 120.00377 * 287.50245 * 17 15 14 37 37 H 0.96998 * 120.00014 * 180.02562 * 21 20 18 38 38 H 1.08997 * 113.61646 * 105.47219 * 26 12 11 39 39 H 1.08998 * 113.69354 * 334.57527 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2731 1.0553 0.0000 4 7 3.6112 0.6459 0.0006 5 6 4.7776 1.5323 0.0013 6 6 3.6459 -0.6971 0.0070 7 17 5.0708 -1.6888 0.0165 8 6 2.3373 -1.1439 0.0005 9 6 1.8921 -2.5480 0.0007 10 8 1.7088 -3.1279 -1.0524 11 7 1.6881 -3.1901 1.1680 12 6 1.2459 -4.5868 1.1682 13 1 0.7322 -4.8682 0.2490 14 6 2.3409 -5.5795 1.5928 15 6 1.2478 -6.3309 2.3710 16 1 1.5784 -6.6998 3.3420 17 7 0.5590 -7.3517 1.5776 18 6 0.7956 -8.6792 1.8159 19 1 1.4898 -8.9737 2.5892 20 6 0.1425 -9.6466 1.0645 21 7 -0.7038 -9.2877 0.1225 22 14 0.4648 -11.4575 1.3901 23 1 1.4498 -11.5944 2.4929 24 1 -0.8047 -12.1248 1.7751 25 1 1.0051 -12.0928 0.1614 26 6 0.4916 -4.9939 2.4449 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5135 30 1 5.0661 1.7523 1.0292 31 1 5.6057 1.0435 -0.5118 32 1 4.5287 2.4606 -0.5129 33 1 1.8340 -2.7275 2.0080 34 1 3.1065 -5.1385 2.2311 35 1 2.7576 -6.1511 0.7634 36 1 -0.0647 -7.0873 0.8833 37 1 -1.1605 -9.9636 -0.4024 38 1 -0.5846 -5.0927 2.3034 39 1 0.7505 -4.3934 3.3169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020448564.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:11 Heat of formation + Delta-G solvation = 44.215544 kcal Electronic energy + Delta-G solvation = -23138.737783 eV Core-core repulsion = 19530.103819 eV Total energy + Delta-G solvation = -3608.633964 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.62748 -40.85676 -39.22100 -38.17965 -35.70011 -35.20035 -34.19382 -31.92689 -31.29736 -30.46167 -27.27184 -26.48093 -26.13554 -24.72756 -23.21788 -21.78571 -21.13111 -20.23191 -19.33674 -18.79626 -17.64600 -17.30916 -16.90156 -16.61633 -16.34999 -15.83202 -15.52932 -15.13612 -14.96508 -14.49777 -14.41631 -14.24490 -13.73669 -13.67323 -13.54358 -13.31580 -13.29034 -13.24698 -12.89687 -12.82391 -12.79090 -12.59665 -12.10397 -11.96103 -11.80765 -11.69374 -11.33726 -11.02483 -10.84768 -10.39154 -9.98677 -9.83266 -9.00323 -7.93565 -5.22962 0.10795 0.24481 1.13711 1.42750 1.44540 1.48652 1.49906 1.59826 2.28151 2.57042 3.22805 3.38573 3.67522 3.68971 3.86253 3.92190 3.95175 4.18451 4.20753 4.30130 4.34044 4.39039 4.57560 4.71010 4.73846 4.82159 4.86450 4.88068 5.04750 5.18976 5.26196 5.28014 5.33889 5.46777 5.53414 5.70305 6.26339 6.29206 6.56235 7.23000 7.33857 8.10583 8.31627 9.30179 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.024937 B = 0.002874 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.580025 B = 9741.469574 C =10273.572891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.117 3.883 3 N -0.285 5.285 4 N -0.347 5.347 5 C 0.080 3.920 6 C 0.157 3.843 7 Cl 0.023 6.977 8 C -0.281 4.281 9 C 0.598 3.402 10 O -0.578 6.578 11 N -0.687 5.687 12 C 0.132 3.868 13 H 0.075 0.925 14 C -0.171 4.171 15 C 0.151 3.849 16 H 0.079 0.921 17 N -0.723 5.723 18 C -0.240 4.240 19 H 0.082 0.918 20 C -0.079 4.079 21 N -0.971 5.971 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.293 1.293 25 H -0.297 1.297 26 C -0.136 4.136 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.415 0.585 34 H 0.104 0.896 35 H 0.035 0.965 36 H 0.372 0.628 37 H 0.250 0.750 38 H 0.064 0.936 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.091 26.322 5.472 29.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.048 4.048 3 N -0.109 5.109 4 N -0.128 5.128 5 C -0.059 4.059 6 C -0.001 4.001 7 Cl 0.051 6.949 8 C -0.297 4.297 9 C 0.383 3.617 10 O -0.457 6.457 11 N -0.337 5.337 12 C 0.027 3.973 13 H 0.093 0.907 14 C -0.213 4.213 15 C 0.041 3.959 16 H 0.097 0.903 17 N -0.361 5.361 18 C -0.372 4.372 19 H 0.100 0.900 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.186 1.186 24 H -0.220 1.220 25 H -0.225 1.225 26 C -0.176 4.176 27 H 0.125 0.875 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.253 0.747 34 H 0.122 0.878 35 H 0.054 0.946 36 H 0.204 0.796 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.338 27.032 4.833 29.709 hybrid contribution 0.174 -1.902 -0.430 1.958 sum 11.513 25.130 4.403 27.990 Atomic orbital electron populations 1.20417 0.83832 1.04352 1.05136 1.22640 0.98218 0.87671 0.96315 1.77241 0.85440 1.21512 1.26664 1.48729 1.07227 1.02540 1.54337 1.22517 0.82655 0.94542 1.06177 1.21991 0.89849 0.84973 1.03317 1.98456 1.34592 1.65305 1.96551 1.19759 0.91496 0.94480 1.23978 1.17427 0.75978 0.84538 0.83756 1.90813 1.52910 1.68757 1.33261 1.45859 1.66936 1.12636 1.08260 1.22286 0.96760 0.79407 0.98873 0.90730 1.24188 0.98415 0.97981 1.00727 1.21235 0.92558 0.87902 0.94245 0.90333 1.42408 1.50499 1.01875 1.41292 1.19741 1.19491 0.83797 1.14150 0.90002 1.25625 1.00059 1.02444 0.99011 1.69844 1.33031 1.33385 1.25935 0.85053 0.77228 0.80141 0.77217 1.18627 1.21997 1.22497 1.23732 0.99688 0.96955 0.97199 0.87546 0.88593 0.91030 0.87618 0.87647 0.86816 0.74716 0.87778 0.94580 0.79591 0.94086 0.91693 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.28 71.24 0.73 -0.63 16 2 C 0.12 2.65 7.26 43.53 0.32 2.97 16 3 N -0.28 -6.13 12.49 -46.66 -0.58 -6.72 16 4 N -0.35 -6.36 3.98 -357.41 -1.42 -7.78 16 5 C 0.08 0.65 11.28 127.77 1.44 2.10 16 6 C 0.16 3.46 7.54 84.32 0.64 4.10 16 7 Cl 0.02 0.45 28.57 -2.72 -0.08 0.37 16 8 C -0.28 -7.24 5.88 -20.12 -0.12 -7.36 16 9 C 0.60 18.69 7.20 86.62 0.62 19.31 16 10 O -0.58 -24.21 16.71 -4.07 -0.07 -24.27 16 11 N -0.69 -18.07 5.35 -443.42 -2.37 -20.45 16 12 C 0.13 4.31 4.12 45.52 0.19 4.50 16 13 H 0.07 3.12 7.46 -2.39 -0.02 3.10 16 14 C -0.17 -5.88 7.68 31.12 0.24 -5.64 16 15 C 0.15 5.71 4.56 45.52 0.21 5.91 16 16 H 0.08 2.80 8.10 -2.39 -0.02 2.78 16 17 N -0.72 -36.69 5.31 -320.43 -1.70 -38.39 16 18 C -0.24 -13.35 9.97 84.03 0.84 -12.51 16 19 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 20 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 21 N -0.97 -60.90 13.06 21.65 0.28 -60.62 16 22 Si 0.97 46.65 29.55 68.60 2.03 48.67 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 25 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 26 C -0.14 -3.97 7.58 31.12 0.24 -3.73 16 27 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.45 8.00 -2.39 -0.02 1.43 16 30 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.11 0.60 7.78 -2.39 -0.02 0.58 16 32 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.42 7.88 8.71 -92.71 -0.81 7.07 16 34 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.37 20.68 7.90 -92.71 -0.73 19.95 16 37 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.12 2.53 8.12 -2.39 -0.02 2.51 16 Total: -1.00 -77.38 354.39 1.44 -75.93 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.44 Total: 28.40 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 5.80 Total: 4.85 kcal Atomic # 7 Polarization: -128.15 SS G_CDS: -5.80 Total: -133.95 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.07 Total: -24.27 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -0.08 Total: 0.37 kcal Total: -77.38 1.44 -75.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020448564.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.147 kcal (2) G-P(sol) polarization free energy of solvation -77.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds