Wall clock time and date at job start Tue Mar 31 2020 10:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.46891 * 2 1 4 4 C 1.35643 * 117.00183 * 179.97438 * 3 2 1 5 5 N 1.32337 * 119.54019 * 359.97438 * 4 3 2 6 6 C 1.31721 * 121.81977 * 180.02562 * 5 4 3 7 7 C 1.39520 * 120.67520 * 359.97341 * 6 5 4 8 8 C 1.47942 * 120.49075 * 179.97438 * 7 6 5 9 9 C 1.40022 * 119.50260 * 180.02562 * 8 7 6 10 10 C 1.35981 * 121.18582 * 179.97438 * 9 8 7 11 11 C 1.41059 * 120.11355 * 0.02562 * 10 9 8 12 12 C 1.40417 * 120.48211 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99666 * 205.40668 * 12 11 10 14 14 C 1.40277 * 119.99896 * 25.40889 * 12 11 10 15 15 N 1.30648 * 120.00018 * 16.91752 * 14 12 11 16 16 Si 1.86800 * 119.99929 * 196.90828 * 14 12 11 17 17 H 1.48499 * 109.47439 * 265.18194 * 16 14 12 18 18 H 1.48508 * 109.47141 * 25.18299 * 16 14 12 19 19 H 1.48493 * 109.47094 * 145.17883 * 16 14 12 20 20 C 1.46645 * 119.02955 * 0.27806 * 11 10 9 21 21 C 1.43207 * 120.56622 * 179.70000 * 20 11 10 22 22 N 9.73286 * 173.23247 * 180.84108 * 2 1 3 23 23 C 1.39068 * 118.87063 * 359.44213 * 20 11 10 24 24 C 1.40163 * 119.02086 * 0.28422 * 7 6 5 25 25 C 1.38213 * 118.34349 * 359.51591 * 24 7 6 26 26 F 1.35102 * 120.39191 * 180.20362 * 25 24 7 27 27 H 1.08999 * 109.47212 * 60.00513 * 1 2 3 28 28 H 1.09002 * 109.46725 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47660 * 299.99687 * 1 2 3 30 30 H 1.08997 * 109.47660 * 240.00313 * 2 1 3 31 31 H 1.08999 * 109.47212 * 119.99487 * 2 1 3 32 32 H 1.07998 * 119.66295 * 180.02562 * 6 5 4 33 33 H 1.08000 * 119.40852 * 0.02562 * 9 8 7 34 34 H 1.08000 * 119.93750 * 180.02562 * 10 9 8 35 35 H 0.97003 * 119.99584 * 180.02562 * 15 14 12 36 36 H 1.08009 * 120.09936 * 180.24626 * 23 20 11 37 37 H 1.08006 * 120.82501 * 179.72520 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3510 1.5251 0.0005 5 7 4.1488 0.4693 0.0015 6 6 5.4604 0.5899 0.0026 7 6 6.0594 1.8500 0.0021 8 6 7.5330 1.9807 0.0039 9 6 8.1122 3.2555 0.0040 10 6 9.4626 3.4154 0.0061 11 6 10.3088 2.2868 0.0077 12 6 11.7043 2.4430 0.0094 13 1 12.3353 1.6632 -0.3907 14 6 12.2787 3.6118 0.5307 15 7 11.5752 4.3975 1.3018 16 14 14.0494 4.0445 0.1227 17 1 14.9419 3.5450 1.1994 18 1 14.4287 3.4135 -1.1671 19 1 14.1855 5.5190 0.0112 20 6 9.7099 0.9483 0.0009 21 6 10.5381 -0.2201 -0.0041 22 7 11.1950 -1.1468 -0.0168 23 6 8.3241 0.8327 0.0049 24 6 5.2443 2.9902 0.0066 25 6 3.8731 2.8167 0.0010 26 9 3.0487 3.8870 0.0009 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 6.0786 -0.2957 0.0030 33 1 7.4750 4.1275 0.0031 34 1 9.8878 4.4081 0.0065 35 1 11.9723 5.2059 1.6620 36 1 7.8620 -0.1436 0.0040 37 1 5.6770 3.9798 0.0108 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243772607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:54 Heat of formation + Delta-G solvation = -14.014529 kcal Electronic energy + Delta-G solvation = -23688.706696 eV Core-core repulsion = 19924.227480 eV Total energy + Delta-G solvation = -3764.479216 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.101 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.65661 -40.28155 -38.45276 -37.43382 -35.29582 -34.54350 -32.42249 -31.94925 -30.78867 -30.11773 -28.71636 -25.83738 -24.45295 -23.19523 -22.64822 -21.69651 -20.86021 -18.53697 -18.05609 -17.68436 -16.96819 -16.44253 -16.23792 -15.73223 -15.30507 -15.22272 -14.43693 -14.06187 -13.84774 -13.55673 -13.51259 -13.20727 -12.98401 -12.92246 -12.75655 -12.38924 -12.32736 -12.00579 -11.95151 -11.83727 -11.57484 -11.44344 -11.36457 -11.21781 -10.93741 -10.64820 -10.27586 -10.07479 -9.84056 -9.50619 -9.41084 -8.51687 -7.97255 -7.49421 -7.29939 -4.91448 1.08128 1.26400 2.05303 2.51835 2.78514 2.82602 2.90952 3.02537 3.51057 3.74222 3.77432 4.18944 4.25956 4.27424 4.54718 4.88500 4.92357 4.99970 5.13997 5.22445 5.25600 5.28006 5.36549 5.61811 5.66629 5.72813 5.79670 5.91363 6.06734 6.14493 6.22684 6.44069 6.57992 6.64667 6.81893 6.98966 7.22703 7.38237 7.43657 7.56499 7.64039 7.94841 7.99356 8.15663 8.31609 8.65741 9.46593 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.023454 B = 0.002969 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.564147 B = 9429.833190 C =10533.299503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.068 3.932 3 O -0.308 6.308 4 C 0.251 3.749 5 N -0.503 5.503 6 C 0.097 3.903 7 C -0.028 4.028 8 C -0.204 4.204 9 C -0.055 4.055 10 C -0.163 4.163 11 C 0.153 3.847 12 C -0.406 4.406 13 H 0.091 0.909 14 C 0.072 3.928 15 N -0.746 5.746 16 Si 0.919 3.081 17 H -0.263 1.263 18 H -0.253 1.253 19 H -0.267 1.267 20 C -0.184 4.184 21 C 0.298 3.702 22 N -0.502 5.502 23 C 0.005 3.995 24 C -0.107 4.107 25 C 0.046 3.954 26 F -0.132 7.132 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.164 0.836 33 H 0.099 0.901 34 H 0.128 0.872 35 H 0.296 0.704 36 H 0.105 0.895 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.278 0.765 -1.380 11.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.007 4.007 3 O -0.216 6.216 4 C 0.071 3.929 5 N -0.225 5.225 6 C -0.060 4.060 7 C -0.030 4.030 8 C -0.206 4.206 9 C -0.075 4.075 10 C -0.182 4.182 11 C 0.147 3.853 12 C -0.432 4.432 13 H 0.109 0.891 14 C -0.154 4.154 15 N -0.367 5.367 16 Si 0.741 3.259 17 H -0.187 1.187 18 H -0.176 1.176 19 H -0.192 1.192 20 C -0.190 4.190 21 C -0.013 4.013 22 N -0.181 5.181 23 C -0.016 4.016 24 C -0.133 4.133 25 C 0.024 3.976 26 F -0.110 7.110 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.181 0.819 33 H 0.117 0.883 34 H 0.145 0.855 35 H 0.107 0.893 36 H 0.123 0.877 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.893 -1.050 -1.238 11.013 hybrid contribution 0.757 1.451 0.017 1.637 sum -10.136 0.401 -1.221 10.217 Atomic orbital electron populations 1.21809 0.93323 1.02630 1.03199 1.22535 0.94408 0.81370 1.02416 1.86207 1.16448 1.30280 1.88695 1.19641 0.84674 0.88681 0.99858 1.67245 1.06827 1.31168 1.17256 1.22581 0.88321 0.97365 0.97707 1.19620 0.94523 0.91920 0.96966 1.17463 0.88276 0.93476 1.21407 1.20472 0.95121 0.94792 0.97074 1.20912 0.91833 0.98837 1.06597 1.18527 0.92887 0.88717 0.85150 1.19942 0.92528 1.01353 1.29333 0.89089 1.26239 1.01987 0.94763 0.92387 1.69703 1.38866 1.10289 1.17804 0.86072 0.79971 0.78966 0.80911 1.18741 1.17642 1.19166 1.16726 0.90044 0.87365 1.24864 1.25714 0.92182 0.92050 0.91309 1.81053 1.09865 1.12392 1.14741 1.20577 0.91408 0.96379 0.93265 1.21517 0.89702 1.01155 1.00943 1.17506 0.88249 0.81501 1.10327 1.91480 1.71640 1.53544 1.94370 0.91770 0.90468 0.91757 0.91764 0.91755 0.81858 0.88341 0.85477 0.89287 0.87665 0.83025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.07 0.79 6.02 37.16 0.22 1.02 16 3 O -0.31 -4.63 9.98 -18.63 -0.19 -4.82 16 4 C 0.25 4.05 7.50 -16.93 -0.13 3.92 16 5 N -0.50 -7.98 9.18 -12.90 -0.12 -8.10 16 6 C 0.10 1.50 10.58 -17.12 -0.18 1.32 16 7 C -0.03 -0.45 5.90 -104.72 -0.62 -1.07 16 8 C -0.20 -3.67 5.88 -104.81 -0.62 -4.28 16 9 C -0.06 -1.03 9.31 -39.72 -0.37 -1.40 16 10 C -0.16 -3.37 8.62 -39.32 -0.34 -3.71 16 11 C 0.15 3.38 5.73 -104.62 -0.60 2.78 16 12 C -0.41 -9.06 8.55 -38.00 -0.33 -9.38 16 13 H 0.09 2.06 7.38 -52.49 -0.39 1.67 16 14 C 0.07 1.48 5.16 -17.29 -0.09 1.39 16 15 N -0.75 -15.58 10.96 55.56 0.61 -14.98 16 16 Si 0.92 15.71 29.59 -169.99 -5.03 10.68 16 17 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 18 H -0.25 -4.40 7.11 56.52 0.40 -4.00 16 19 H -0.27 -4.38 7.11 56.52 0.40 -3.98 16 20 C -0.18 -3.86 5.93 -104.27 -0.62 -4.48 16 21 C 0.30 6.47 14.29 -22.47 -0.32 6.15 16 22 N -0.50 -11.34 18.54 41.84 0.78 -10.57 16 23 C 0.00 0.08 9.13 -38.83 -0.35 -0.27 16 24 C -0.11 -1.66 9.50 -38.87 -0.37 -2.03 16 25 C 0.05 0.74 7.34 -39.19 -0.29 0.45 16 26 F -0.13 -2.10 17.12 2.25 0.04 -2.06 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.16 2.22 6.16 -52.49 -0.32 1.90 16 33 H 0.10 1.59 6.15 -52.49 -0.32 1.26 16 34 H 0.13 2.67 6.20 -52.49 -0.33 2.34 16 35 H 0.30 5.49 8.29 -40.82 -0.34 5.15 16 36 H 0.11 1.68 6.15 -52.48 -0.32 1.35 16 37 H 0.15 2.10 6.24 -52.48 -0.33 1.77 16 LS Contribution 333.62 15.07 5.03 5.03 Total: -1.00 -24.31 333.62 -6.75 -31.06 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -3.25 Total: 4.28 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -4.61 Total: -10.52 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 1.27 Total: -33.64 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.19 Total: -4.82 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 15.71 SS G_CDS: -5.03 Total: 10.68 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -24.31 -6.75 -31.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243772607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.041 kcal (2) G-P(sol) polarization free energy of solvation -24.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds