Wall clock time and date at job start Tue Mar 31 2020 09:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30862 * 125.89319 * 2 1 4 4 N 1.40065 * 108.31096 * 179.97438 * 3 2 1 5 5 C 1.46491 * 126.02239 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.02387 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 C 1.35241 * 107.95996 * 0.24416 * 4 3 2 15 15 C 1.50700 * 126.16315 * 179.75922 * 14 4 3 16 16 C 1.35639 * 107.67375 * 359.60878 * 14 4 3 17 17 O 1.36187 * 126.08528 * 180.10794 * 16 14 4 18 18 C 1.34185 * 117.00207 * 270.30795 * 17 16 14 19 19 O 1.21210 * 120.00028 * 359.97438 * 18 17 16 20 20 C 1.50703 * 120.00234 * 179.97438 * 18 17 16 21 21 O 1.42894 * 109.47557 * 180.02562 * 20 18 17 22 22 C 1.42896 * 114.00271 * 180.02562 * 21 20 18 23 23 C 1.50704 * 109.47353 * 179.97438 * 22 21 20 24 24 O 1.20824 * 119.99509 * 359.97438 * 23 22 21 25 25 O 1.34225 * 120.00087 * 179.97438 * 23 22 21 26 26 H 1.09003 * 109.47400 * 90.02256 * 1 2 3 27 27 H 1.08998 * 109.47529 * 210.02380 * 1 2 3 28 28 H 1.09005 * 109.47005 * 330.02390 * 1 2 3 29 29 H 1.09004 * 109.47166 * 330.02653 * 5 4 3 30 30 H 1.08994 * 109.47507 * 210.02359 * 5 4 3 31 31 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 32 32 H 1.09006 * 109.47145 * 89.99985 * 15 14 4 33 33 H 1.09001 * 109.47289 * 209.99806 * 15 14 4 34 34 H 1.08994 * 109.47179 * 330.00095 * 15 14 4 35 35 H 1.08999 * 109.46777 * 299.99949 * 20 18 17 36 36 H 1.08999 * 109.46994 * 59.99683 * 20 18 17 37 37 H 1.09002 * 109.47239 * 299.99519 * 22 21 20 38 38 H 1.09006 * 109.47222 * 59.99731 * 22 21 20 39 39 H 0.96701 * 117.00168 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0601 0.0000 4 7 3.6093 0.6370 0.0006 5 6 4.7885 1.5062 0.0003 6 6 5.1928 1.8048 1.4210 7 1 4.6282 1.3883 2.2421 8 6 6.2875 2.6046 1.6727 9 7 6.9753 3.1114 0.6729 10 14 6.7932 2.9683 3.4337 11 1 5.8631 2.2839 4.3673 12 1 8.1754 2.4763 3.6634 13 1 6.7437 4.4335 3.6704 14 6 3.6182 -0.7153 -0.0045 15 6 4.8407 -1.5965 -0.0110 16 6 2.3286 -1.1357 0.0006 17 8 1.9071 -2.4306 0.0000 18 6 1.7191 -3.0096 -1.1959 19 8 1.9235 -2.3814 -2.2122 20 6 1.2538 -4.4408 -1.2754 21 8 1.1295 -4.8259 -2.6459 22 6 0.6911 -6.1729 -2.8337 23 6 0.5952 -6.4690 -4.3082 24 8 0.8733 -5.6140 -5.1154 25 8 0.2008 -7.6825 -4.7248 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3634 -0.8897 0.5142 28 1 -0.3633 0.8902 0.5135 29 1 4.5529 2.4381 -0.5139 30 1 5.6090 1.0053 -0.5134 31 1 7.7452 3.6744 0.8499 32 1 5.1381 -1.8129 1.0152 33 1 4.6138 -2.5291 -0.5277 34 1 5.6545 -1.0851 -0.5249 35 1 1.9795 -5.0867 -0.7813 36 1 0.2868 -4.5364 -0.7816 37 1 1.4046 -6.8550 -2.3715 38 1 -0.2880 -6.3040 -2.3727 39 1 0.1543 -7.8251 -5.6801 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574434438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:31 Heat of formation + Delta-G solvation = -133.619384 kcal Electronic energy + Delta-G solvation = -25381.338890 eV Core-core repulsion = 21291.991509 eV Total energy + Delta-G solvation = -4089.347381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.125 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.27333 -40.64453 -39.80787 -38.22602 -36.50769 -36.24109 -34.03879 -32.61545 -31.03570 -30.21807 -29.09797 -28.01779 -26.22043 -25.97178 -23.05446 -22.24727 -21.78108 -19.55336 -19.24526 -18.60168 -17.91922 -17.31507 -17.24015 -16.81941 -16.51180 -16.33549 -16.06383 -15.35787 -14.83073 -14.55933 -14.38467 -13.98722 -13.41188 -13.30703 -12.99819 -12.94177 -12.69350 -12.55746 -12.42121 -12.07263 -11.99850 -11.92044 -11.73593 -11.57460 -11.05370 -10.99112 -10.88515 -10.84640 -10.41118 -10.40190 -10.30635 -9.79077 -9.75977 -8.70123 -8.39817 -7.74990 -6.31573 -4.39621 1.72067 1.77539 2.25173 2.39892 2.69009 3.17265 3.22546 3.25486 3.30132 3.40145 3.90372 4.25153 4.43955 4.52310 4.64784 4.76515 4.77519 4.85137 5.03325 5.10890 5.30296 5.51704 5.70969 5.88755 5.92826 6.04126 6.05706 6.09569 6.24449 6.30171 6.45464 6.58198 6.91190 6.96851 7.23406 7.47190 7.58010 7.78685 7.80493 8.12058 8.40519 8.66467 9.27002 10.76344 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.026180 B = 0.002603 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.278837 B =10754.279368 C =11122.198389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.061 3.939 3 N -0.279 5.279 4 N -0.312 5.312 5 C 0.256 3.744 6 C -0.539 4.539 7 H 0.066 0.934 8 C 0.066 3.934 9 N -0.890 5.890 10 Si 0.908 3.092 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.108 3.892 15 C -0.085 4.085 16 C -0.106 4.106 17 O -0.249 6.249 18 C 0.433 3.567 19 O -0.467 6.467 20 C 0.077 3.923 21 O -0.348 6.348 22 C 0.072 3.928 23 C 0.477 3.523 24 O -0.485 6.485 25 O -0.516 6.516 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.269 0.731 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.320 -21.908 -3.392 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 N -0.103 5.103 4 N -0.092 5.092 5 C 0.139 3.861 6 C -0.577 4.577 7 H 0.085 0.915 8 C -0.138 4.138 9 N -0.527 5.527 10 Si 0.735 3.265 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.026 4.026 15 C -0.143 4.143 16 C -0.160 4.160 17 O -0.161 6.161 18 C 0.274 3.726 19 O -0.350 6.350 20 C 0.000 4.000 21 O -0.266 6.266 22 C -0.005 4.005 23 C 0.317 3.683 24 O -0.370 6.370 25 O -0.330 6.330 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -11.771 -19.735 -3.731 23.279 hybrid contribution 0.360 -0.751 0.337 0.898 sum -11.411 -20.485 -3.394 23.694 Atomic orbital electron populations 1.20073 0.87183 1.02912 1.02424 1.22276 0.96882 0.89861 1.01435 1.77394 0.87298 1.21595 1.24050 1.49192 1.06149 1.03677 1.50186 1.19831 0.77492 0.89408 0.99355 1.21315 1.13204 1.32130 0.91065 0.91546 1.24942 0.95621 0.94917 0.98300 1.69932 1.18943 1.32794 1.31048 0.86265 0.78413 0.78348 0.83455 1.19514 1.20601 1.20566 1.20913 0.95873 0.86506 0.99313 1.20366 0.93409 0.97025 1.03549 1.17576 0.90596 0.81621 1.26179 1.84662 1.76870 1.24336 1.30200 1.23810 0.76086 0.89174 0.83526 1.90841 1.44105 1.64005 1.36089 1.21686 1.03270 0.91247 0.83840 1.88044 1.88436 1.26575 1.23587 1.21628 1.02810 0.85744 0.90327 1.22788 0.73878 0.79712 0.91963 1.90830 1.43433 1.46791 1.55919 1.84428 1.80668 1.34652 1.33268 0.91094 0.90979 0.90759 0.92432 0.92641 0.92177 0.89602 0.91239 0.90187 0.88244 0.88252 0.88176 0.88199 0.72278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.44 36.00 0.38 -0.65 16 2 C 0.06 1.25 7.23 -82.28 -0.59 0.66 16 3 N -0.28 -6.61 12.57 33.73 0.42 -6.18 16 4 N -0.31 -7.50 3.60 -58.17 -0.21 -7.71 16 5 C 0.26 6.60 6.00 -5.20 -0.03 6.57 16 6 C -0.54 -14.70 9.39 -34.44 -0.32 -15.02 16 7 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 10 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.11 2.29 6.95 -82.02 -0.57 1.72 16 15 C -0.09 -1.47 10.09 36.01 0.36 -1.11 16 16 C -0.11 -2.11 5.34 -39.78 -0.21 -2.33 16 17 O -0.25 -4.03 10.13 -24.22 -0.25 -4.27 16 18 C 0.43 6.57 7.99 36.01 0.29 6.85 16 19 O -0.47 -9.39 16.26 -25.78 -0.42 -9.81 16 20 C 0.08 0.69 6.53 36.01 0.24 0.93 16 21 O -0.35 -3.95 9.41 -64.76 -0.61 -4.56 16 22 C 0.07 0.46 6.53 36.01 0.24 0.69 16 23 C 0.48 4.15 8.40 36.01 0.30 4.45 16 24 O -0.48 -6.77 17.26 -25.48 -0.44 -7.21 16 25 O -0.52 -2.70 13.42 -39.24 -0.53 -3.23 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.06 1.41 7.05 -51.93 -0.37 1.05 16 31 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.40 7.08 -51.93 -0.37 1.03 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.42 0.62 9.10 45.56 0.41 1.04 16 LS Contribution 357.92 15.07 5.39 5.39 Total: -1.00 -38.31 357.92 -5.04 -43.34 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -4.09 Total: -1.88 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -0.03 Total: 4.44 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.95 Total: -38.06 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -2.24 Total: -29.08 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -38.31 -5.04 -43.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574434438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.276 kcal (2) G-P(sol) polarization free energy of solvation -38.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds