Wall clock time and date at job start Tue Mar 31 2020 09:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35707 * 117.00011 * 2 1 4 4 C 1.38825 * 120.14302 * 270.01323 * 3 2 1 5 5 F 1.35105 * 119.94068 * 0.02562 * 4 3 2 6 6 C 1.38266 * 120.11387 * 179.97438 * 4 3 2 7 7 C 1.38446 * 120.41467 * 359.97438 * 6 4 3 8 8 C 1.38093 * 120.28304 * 359.78626 * 7 6 4 9 9 F 1.35107 * 120.05842 * 180.23248 * 8 7 6 10 10 C 1.39989 * 119.87953 * 0.46270 * 8 7 6 11 11 C 1.47394 * 120.20056 * 179.78748 * 10 8 7 12 12 O 1.21603 * 120.00262 * 269.72770 * 11 10 8 13 13 N 1.34777 * 119.99480 * 89.72456 * 11 10 8 14 14 C 1.46499 * 119.99665 * 179.72402 * 13 11 10 15 15 C 1.53951 * 113.74297 * 254.01897 * 14 13 11 16 16 N 1.47814 * 86.03758 * 222.08522 * 15 14 13 17 17 C 1.36932 * 134.45715 * 204.64642 * 16 15 14 18 18 H 1.07995 * 120.00326 * 179.86751 * 17 16 15 19 19 C 1.38817 * 119.99793 * 359.86085 * 17 16 15 20 20 N 1.31613 * 120.00127 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99909 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.46877 * 60.00275 * 21 19 17 23 23 H 1.48497 * 109.47114 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47183 * 300.00796 * 21 19 17 25 25 C 1.47577 * 91.05097 * 24.55007 * 16 15 14 26 26 H 1.08998 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47281 * 300.00742 * 1 2 3 28 28 H 1.09002 * 109.46977 * 60.00542 * 1 2 3 29 29 H 1.08003 * 119.79247 * 180.02562 * 6 4 3 30 30 H 1.07998 * 119.86177 * 180.02562 * 7 6 4 31 31 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 32 32 H 1.09000 * 112.94810 * 25.60828 * 14 13 11 33 33 H 1.09000 * 113.77101 * 336.35008 * 15 14 13 34 34 H 1.09000 * 113.76926 * 107.74289 * 15 14 13 35 35 H 0.97003 * 119.99806 * 180.02562 * 20 19 17 36 36 H 1.09005 * 113.76936 * 221.15467 * 25 16 15 37 37 H 1.08997 * 113.77659 * 89.75281 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 2.3613 1.8304 -1.2005 5 9 2.0547 1.2304 -2.3715 6 6 2.9886 3.0626 -1.1998 7 6 3.3058 3.6869 -0.0055 8 6 2.9945 3.0864 1.1984 9 9 3.3019 3.7018 2.3612 10 6 2.3642 1.8365 1.2118 11 6 2.0329 1.1869 2.4927 12 8 2.8345 0.4409 3.0214 13 7 0.8414 1.4199 3.0780 14 6 0.5097 0.7695 4.3482 15 6 -0.5120 -0.3739 4.2108 16 7 -1.1335 0.1718 5.4359 17 6 -1.9155 -0.3528 6.4300 18 1 -2.2489 0.2751 7.2430 19 6 -2.2798 -1.6918 6.3928 20 7 -1.8731 -2.4572 5.4023 21 14 -3.3472 -2.4074 7.7486 22 1 -4.6434 -1.6840 7.7918 23 1 -3.5929 -3.8466 7.4775 24 1 -2.6544 -2.2601 9.0538 25 6 -0.5710 1.5078 5.1589 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 3.2319 3.5415 -2.1368 30 1 3.7953 4.6495 -0.0154 31 1 0.2018 2.0147 2.6562 32 1 1.3907 0.5029 4.9319 33 1 -1.1431 -0.2952 3.3256 34 1 -0.0806 -1.3665 4.3402 35 1 -2.1280 -3.3927 5.3761 36 1 -0.1864 2.0147 6.0439 37 1 -1.2193 2.1405 4.5527 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030779607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:12 Heat of formation + Delta-G solvation = -67.706739 kcal Electronic energy + Delta-G solvation = -25932.293414 eV Core-core repulsion = 21734.716705 eV Total energy + Delta-G solvation = -4197.576710 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.28359 -49.24520 -40.52957 -39.02967 -37.66434 -37.35050 -33.63911 -32.03525 -31.23463 -30.22850 -27.61112 -27.13627 -24.90018 -24.80383 -23.00463 -22.85632 -20.75702 -19.77489 -18.68638 -18.05844 -18.00668 -16.88559 -16.74033 -16.63766 -16.13303 -15.89760 -15.67231 -15.19364 -14.99731 -14.88570 -14.73561 -14.20334 -14.03736 -13.85546 -13.46968 -12.97267 -12.70335 -12.49869 -12.19994 -11.98746 -11.67783 -11.51482 -11.50576 -10.93101 -10.81856 -10.55735 -10.42343 -10.13747 -9.80529 -9.58288 -9.46122 -8.94488 -8.84803 -8.57639 -6.97270 -5.81191 -3.15500 0.31743 0.42180 2.56030 2.65172 3.13994 3.19604 3.38329 3.42250 3.43728 3.75655 3.88337 4.20587 4.39717 4.48975 4.56610 4.84662 5.07788 5.09292 5.17583 5.32630 5.40049 5.43309 5.45048 5.50612 5.53940 5.60680 5.94262 6.09578 6.13480 6.32359 6.48440 6.61456 7.02095 7.17089 7.26583 7.49210 7.67866 7.91953 8.30240 8.98575 9.65065 10.50420 11.35407 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.022725 B = 0.003492 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.836994 B = 8015.548074 C = 8850.585742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.318 6.318 3 C 0.129 3.871 4 C 0.070 3.930 5 F -0.124 7.124 6 C -0.100 4.100 7 C -0.133 4.133 8 C 0.138 3.862 9 F -0.120 7.120 10 C -0.152 4.152 11 C 0.567 3.433 12 O -0.514 6.514 13 N -0.704 5.704 14 C 0.090 3.910 15 C 0.156 3.844 16 N -0.605 5.605 17 C -0.228 4.228 18 H 0.082 0.918 19 C -0.004 4.004 20 N -0.918 5.918 21 Si 0.915 3.085 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.114 3.886 26 H 0.108 0.892 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.396 0.604 32 H 0.113 0.887 33 H 0.028 0.972 34 H 0.079 0.921 35 H 0.256 0.744 36 H 0.051 0.949 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.701 13.967 -15.853 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.234 6.234 3 C 0.083 3.917 4 C 0.050 3.950 5 F -0.102 7.102 6 C -0.119 4.119 7 C -0.152 4.152 8 C 0.118 3.882 9 F -0.098 7.098 10 C -0.157 4.157 11 C 0.350 3.650 12 O -0.389 6.389 13 N -0.354 5.354 14 C -0.014 4.014 15 C 0.030 3.970 16 N -0.332 5.332 17 C -0.356 4.356 18 H 0.100 0.900 19 C -0.201 4.201 20 N -0.564 5.564 21 Si 0.745 3.255 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.209 1.209 25 C -0.013 4.013 26 H 0.126 0.874 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.173 0.827 30 H 0.173 0.827 31 H 0.230 0.770 32 H 0.131 0.869 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.153 12.944 -15.249 21.600 hybrid contribution -1.143 0.010 0.356 1.197 sum 7.010 12.954 -14.893 20.946 Atomic orbital electron populations 1.23242 0.76701 1.05040 1.01081 1.86091 1.21221 1.22233 1.93894 1.18332 0.97207 0.86877 0.89298 1.17877 1.03196 0.92955 0.80954 1.91541 1.91068 1.83059 1.44566 1.21009 0.97940 0.93198 0.99744 1.20951 1.02549 1.02063 0.89606 1.17417 0.98411 0.90069 0.82353 1.91592 1.90416 1.81626 1.46171 1.20348 1.05145 0.94893 0.95303 1.17600 0.82779 0.81375 0.83254 1.90851 1.48755 1.35707 1.63627 1.46185 1.16382 1.48255 1.24604 1.24058 0.98462 0.96035 0.82856 1.22703 0.89188 0.96663 0.88455 1.45686 1.59865 1.04165 1.23492 1.18934 1.23839 0.93134 0.99654 0.90045 1.24814 1.00763 0.96190 0.98369 1.69810 1.48722 1.06155 1.31739 0.86168 0.80089 0.78107 0.81173 1.21134 1.21479 1.20937 1.22866 0.91715 0.90441 0.96300 0.87395 0.92505 0.93039 0.82736 0.82690 0.77005 0.86908 0.95440 0.90318 0.93418 0.93040 0.94693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.13 101.05 1.12 1.51 16 2 O -0.32 -4.62 9.73 -18.83 -0.18 -4.81 16 3 C 0.13 1.67 5.74 -38.65 -0.22 1.45 16 4 C 0.07 0.73 7.30 -39.35 -0.29 0.45 16 5 F -0.12 -1.37 17.11 2.25 0.04 -1.33 16 6 C -0.10 -0.73 10.00 -39.49 -0.39 -1.13 16 7 C -0.13 -1.01 10.00 -39.56 -0.40 -1.40 16 8 C 0.14 1.54 7.29 -38.98 -0.28 1.26 16 9 F -0.12 -1.49 16.83 2.25 0.04 -1.45 16 10 C -0.15 -2.07 5.64 -104.80 -0.59 -2.66 16 11 C 0.57 9.66 6.43 -12.53 -0.08 9.58 16 12 O -0.51 -11.00 16.73 5.27 0.09 -10.91 16 13 N -0.70 -11.09 4.98 -56.42 -0.28 -11.37 16 14 C 0.09 1.75 4.40 -70.13 -0.31 1.44 16 15 C 0.16 3.67 7.33 -2.83 -0.02 3.65 16 16 N -0.61 -15.31 3.70 -177.85 -0.66 -15.97 16 17 C -0.23 -6.34 10.70 -15.06 -0.16 -6.50 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 20 N -0.92 -27.14 11.39 55.49 0.63 -26.51 16 21 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.11 2.23 8.69 -2.97 -0.03 2.21 16 26 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.06 0.67 7.70 -51.93 -0.40 0.27 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 30 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.40 5.04 8.65 -40.82 -0.35 4.69 16 32 H 0.11 2.40 7.51 -51.93 -0.39 2.01 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 2.12 7.16 -51.93 -0.37 1.75 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 LS Contribution 335.43 15.07 5.05 5.05 Total: -1.00 -34.08 335.43 -6.06 -40.13 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.02 Total: 0.57 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -1.74 Total: 9.64 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.31 Total: -53.85 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.09 Total: -15.72 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.08 -6.06 -40.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030779607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.575 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds