Wall clock time and date at job start Tue Mar 31 2020 09:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35707 * 117.00011 * 2 1 4 4 C 1.38825 * 120.14302 * 270.01323 * 3 2 1 5 5 F 1.35105 * 119.94068 * 0.02562 * 4 3 2 6 6 C 1.38266 * 120.11387 * 179.97438 * 4 3 2 7 7 C 1.38446 * 120.41467 * 359.97438 * 6 4 3 8 8 C 1.38093 * 120.28304 * 359.78626 * 7 6 4 9 9 F 1.35107 * 120.05842 * 180.23248 * 8 7 6 10 10 C 1.39989 * 119.87953 * 0.46270 * 8 7 6 11 11 C 1.47394 * 120.20056 * 179.78748 * 10 8 7 12 12 O 1.21603 * 120.00262 * 269.72770 * 11 10 8 13 13 N 1.34777 * 119.99480 * 89.72456 * 11 10 8 14 14 C 1.46499 * 119.99665 * 179.72402 * 13 11 10 15 15 C 1.53951 * 113.74297 * 254.01897 * 14 13 11 16 16 N 1.47814 * 86.03758 * 222.08522 * 15 14 13 17 17 C 1.36932 * 134.45715 * 204.64642 * 16 15 14 18 18 H 1.07995 * 120.00326 * 179.86751 * 17 16 15 19 19 C 1.38817 * 119.99793 * 359.86085 * 17 16 15 20 20 N 1.31613 * 120.00127 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99909 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.46877 * 60.00275 * 21 19 17 23 23 H 1.48497 * 109.47114 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47183 * 300.00796 * 21 19 17 25 25 C 1.47577 * 91.05097 * 24.55007 * 16 15 14 26 26 H 1.08998 * 109.47219 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47281 * 300.00742 * 1 2 3 28 28 H 1.09002 * 109.46977 * 60.00542 * 1 2 3 29 29 H 1.08003 * 119.79247 * 180.02562 * 6 4 3 30 30 H 1.07998 * 119.86177 * 180.02562 * 7 6 4 31 31 H 0.97001 * 120.00485 * 0.02562 * 13 11 10 32 32 H 1.09000 * 112.94810 * 25.60828 * 14 13 11 33 33 H 1.09000 * 113.77101 * 336.35008 * 15 14 13 34 34 H 1.09000 * 113.76926 * 107.74289 * 15 14 13 35 35 H 0.97003 * 119.99806 * 180.02562 * 20 19 17 36 36 H 1.09005 * 113.76936 * 221.15467 * 25 16 15 37 37 H 1.08997 * 113.77659 * 89.75281 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 2.3613 1.8304 -1.2005 5 9 2.0547 1.2304 -2.3715 6 6 2.9886 3.0626 -1.1998 7 6 3.3058 3.6869 -0.0055 8 6 2.9945 3.0864 1.1984 9 9 3.3019 3.7018 2.3612 10 6 2.3642 1.8365 1.2118 11 6 2.0329 1.1869 2.4927 12 8 2.8345 0.4409 3.0214 13 7 0.8414 1.4199 3.0780 14 6 0.5097 0.7695 4.3482 15 6 -0.5120 -0.3739 4.2108 16 7 -1.1335 0.1718 5.4359 17 6 -1.9155 -0.3528 6.4300 18 1 -2.2489 0.2751 7.2430 19 6 -2.2798 -1.6918 6.3928 20 7 -1.8731 -2.4572 5.4023 21 14 -3.3472 -2.4074 7.7486 22 1 -4.6434 -1.6840 7.7918 23 1 -3.5929 -3.8466 7.4775 24 1 -2.6544 -2.2601 9.0538 25 6 -0.5710 1.5078 5.1589 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 3.2319 3.5415 -2.1368 30 1 3.7953 4.6495 -0.0154 31 1 0.2018 2.0147 2.6562 32 1 1.3907 0.5029 4.9319 33 1 -1.1431 -0.2952 3.3256 34 1 -0.0806 -1.3665 4.3402 35 1 -2.1280 -3.3927 5.3761 36 1 -0.1864 2.0147 6.0439 37 1 -1.2193 2.1405 4.5527 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030779607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:12 Heat of formation + Delta-G solvation = -91.926736 kcal Electronic energy + Delta-G solvation = -25933.343672 eV Core-core repulsion = 21734.716705 eV Total energy + Delta-G solvation = -4198.626968 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.107 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.17274 -50.05386 -41.66908 -40.36569 -39.15439 -38.36165 -35.28314 -33.88492 -32.27231 -31.04442 -29.46247 -28.12807 -26.67578 -26.04575 -24.53166 -23.75661 -22.04811 -21.47171 -19.67612 -19.06239 -18.91539 -18.80362 -17.89498 -17.62499 -17.24748 -17.03494 -16.96421 -16.60432 -16.11362 -15.83674 -15.79641 -15.61180 -15.45423 -15.36141 -14.63949 -14.17727 -13.83263 -13.72951 -13.38110 -13.35401 -13.26070 -13.02039 -12.82500 -12.67109 -12.53745 -12.37067 -12.00976 -11.59188 -11.50323 -11.13223 -10.90044 -10.30761 -10.14583 -9.75151 -9.00606 -7.93582 -5.29370 -0.49649 -0.36551 1.23852 1.45128 1.49171 1.55330 1.84059 1.94858 2.29896 2.46848 2.95422 3.00883 3.20629 3.31050 3.44033 3.63050 3.74516 3.79182 4.02492 4.20317 4.22858 4.30047 4.43504 4.57131 4.61579 4.66836 4.70070 4.77126 4.85212 4.88095 5.00696 5.19091 5.38905 5.44789 5.57261 5.86056 6.10646 6.31681 6.85653 6.98146 7.56036 8.47806 9.22905 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.022725 B = 0.003492 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.836994 B = 8015.548074 C = 8850.585742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.348 6.348 3 C 0.109 3.891 4 C 0.066 3.934 5 F -0.128 7.128 6 C -0.070 4.070 7 C -0.107 4.107 8 C 0.130 3.870 9 F -0.130 7.130 10 C -0.176 4.176 11 C 0.569 3.431 12 O -0.568 6.568 13 N -0.689 5.689 14 C 0.115 3.885 15 C 0.157 3.843 16 N -0.637 5.637 17 C -0.238 4.238 18 H 0.091 0.909 19 C -0.066 4.066 20 N -0.954 5.954 21 Si 0.983 3.017 22 H -0.273 1.273 23 H -0.296 1.296 24 H -0.276 1.276 25 C 0.125 3.875 26 H 0.104 0.896 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.200 0.800 30 H 0.199 0.801 31 H 0.414 0.586 32 H 0.091 0.909 33 H 0.031 0.969 34 H 0.032 0.968 35 H 0.249 0.751 36 H 0.067 0.933 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.900 17.256 -17.371 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.265 6.265 3 C 0.064 3.936 4 C 0.046 3.954 5 F -0.107 7.107 6 C -0.088 4.088 7 C -0.125 4.125 8 C 0.109 3.891 9 F -0.108 7.108 10 C -0.181 4.181 11 C 0.354 3.646 12 O -0.447 6.447 13 N -0.340 5.340 14 C 0.009 3.991 15 C 0.030 3.970 16 N -0.364 5.364 17 C -0.366 4.366 18 H 0.109 0.891 19 C -0.259 4.259 20 N -0.602 5.602 21 Si 0.810 3.190 22 H -0.198 1.198 23 H -0.222 1.222 24 H -0.202 1.202 25 C 0.000 4.000 26 H 0.123 0.877 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.217 0.783 30 H 0.216 0.784 31 H 0.251 0.749 32 H 0.109 0.891 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.337 16.309 -16.790 24.848 hybrid contribution -1.141 -0.919 0.733 1.638 sum 7.196 15.390 -16.057 23.377 Atomic orbital electron populations 1.23325 0.75940 1.05177 1.01896 1.86040 1.22376 1.23911 1.94156 1.18525 0.98190 0.86773 0.90161 1.18026 1.03697 0.93892 0.79822 1.91535 1.91213 1.83415 1.44492 1.21512 0.94687 0.91179 1.01471 1.21402 1.00471 1.02924 0.87716 1.17694 0.98640 0.89392 0.83337 1.91569 1.90546 1.81607 1.47124 1.20050 1.08190 0.96514 0.93345 1.18154 0.81993 0.80341 0.84089 1.90815 1.50326 1.38093 1.65447 1.45902 1.16797 1.47889 1.23387 1.23350 0.96882 0.94667 0.84151 1.22554 0.90308 0.95799 0.88319 1.45994 1.59941 1.06922 1.23521 1.19394 1.23243 0.93577 1.00419 0.89098 1.25704 1.02636 0.96756 1.00833 1.70025 1.50416 1.05927 1.33852 0.85093 0.78695 0.76726 0.78442 1.19842 1.22224 1.20173 1.22998 0.91163 0.88730 0.97133 0.87732 0.93215 0.90577 0.78251 0.78427 0.74863 0.89053 0.95170 0.94910 0.94231 0.91531 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.13 113.37 1.26 1.97 16 2 O -0.35 -10.38 9.73 -90.28 -0.88 -11.26 16 3 C 0.11 2.76 5.74 22.87 0.13 2.90 16 4 C 0.07 1.20 7.30 22.42 0.16 1.36 16 5 F -0.13 -2.53 17.11 44.97 0.77 -1.76 16 6 C -0.07 -0.67 10.00 22.33 0.22 -0.45 16 7 C -0.11 -1.10 10.00 22.28 0.22 -0.88 16 8 C 0.13 2.60 7.29 22.66 0.17 2.77 16 9 F -0.13 -3.00 16.83 44.97 0.76 -2.25 16 10 C -0.18 -4.70 5.64 -19.98 -0.11 -4.82 16 11 C 0.57 19.93 6.43 86.65 0.56 20.49 16 12 O -0.57 -25.62 16.73 -4.04 -0.07 -25.69 16 13 N -0.69 -21.92 4.98 -450.66 -2.24 -24.17 16 14 C 0.12 4.59 4.40 46.75 0.21 4.79 16 15 C 0.16 7.70 7.33 86.44 0.63 8.33 16 16 N -0.64 -32.64 3.70 -716.60 -2.65 -35.29 16 17 C -0.24 -13.35 10.70 84.04 0.90 -12.45 16 18 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 19 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 20 N -0.95 -58.69 11.39 21.65 0.25 -58.44 16 21 Si 0.98 45.88 29.55 68.60 2.03 47.90 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 C 0.13 4.79 8.69 86.49 0.75 5.54 16 26 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.05 1.21 7.70 -2.39 -0.02 1.19 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.20 0.23 8.06 -2.91 -0.02 0.21 16 30 H 0.20 0.45 8.06 -2.91 -0.02 0.43 16 31 H 0.41 10.20 8.65 -92.71 -0.80 9.40 16 32 H 0.09 4.08 7.51 -2.39 -0.02 4.07 16 33 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.03 1.89 7.16 -2.39 -0.02 1.88 16 35 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.07 2.23 8.11 -2.39 -0.02 2.21 16 Total: -1.00 -79.06 335.43 3.85 -75.21 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.33 Total: 9.53 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 5.57 Total: 26.22 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -4.65 Total: -117.90 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.95 Total: -36.95 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 1.53 Total: -4.01 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -79.06 3.85 -75.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030779607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.719 kcal (2) G-P(sol) polarization free energy of solvation -79.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds