Wall clock time and date at job start Tue Mar 31 2020 09:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35810 * 117.00102 * 2 1 4 4 C 1.38493 * 119.94677 * 0.02630 * 3 2 1 5 5 C 1.38292 * 120.71782 * 179.69453 * 4 3 2 6 6 C 1.39229 * 120.40967 * 0.56169 * 5 4 3 7 7 C 1.47361 * 120.24030 * 179.71562 * 6 5 4 8 8 C 1.39400 * 120.29078 * 64.72252 * 7 6 5 9 9 C 1.37911 * 120.15279 * 179.72654 * 8 7 6 10 10 C 1.38955 * 120.75100 * 0.27980 * 9 8 7 11 11 C 1.37611 * 120.58652 * 359.97438 * 10 9 8 12 12 F 1.35093 * 120.09241 * 179.97438 * 11 10 9 13 13 C 1.41064 * 119.81559 * 359.97438 * 11 10 9 14 14 C 1.40663 * 120.36009 * 180.02562 * 13 11 10 15 15 H 1.07991 * 120.00042 * 143.54753 * 14 13 11 16 16 C 1.40003 * 119.99918 * 323.53977 * 14 13 11 17 17 N 1.30841 * 119.99850 * 339.80075 * 16 14 13 18 18 Si 1.86800 * 119.99952 * 159.79761 * 16 14 13 19 19 H 1.48495 * 109.46839 * 60.00324 * 18 16 14 20 20 H 1.48500 * 109.47149 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47124 * 300.00247 * 18 16 14 22 22 C 1.41550 * 119.52228 * 359.44492 * 6 5 4 23 23 C 1.41129 * 133.49026 * 180.29775 * 22 6 5 24 24 N 1.30323 * 108.70643 * 179.97438 * 23 22 6 25 25 N 1.40034 * 109.63674 * 0.02562 * 24 23 22 26 26 H 0.97005 * 125.99557 * 180.02562 * 25 24 23 27 27 C 1.37221 * 108.00773 * 359.97438 * 25 24 23 28 28 H 1.08997 * 109.47420 * 59.99451 * 1 2 3 29 29 H 1.08997 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47409 * 299.99898 * 1 2 3 31 31 H 1.07991 * 119.64260 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.79720 * 180.27791 * 5 4 3 33 33 H 1.07998 * 119.92001 * 0.02562 * 8 7 6 34 34 H 1.07997 * 119.62254 * 180.25836 * 9 8 7 35 35 H 1.08000 * 119.70868 * 179.97438 * 10 9 8 36 36 H 0.97002 * 119.99951 * 179.97438 * 17 16 14 37 37 H 1.08000 * 125.64627 * 359.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.2902 2.3709 0.0006 5 6 1.9014 3.6114 0.0069 6 6 3.2899 3.7129 0.0011 7 6 3.9373 5.0367 0.0016 8 6 3.7892 5.8914 1.0928 9 6 4.4009 7.1274 1.0926 10 6 5.1657 7.5415 0.0089 11 6 5.3281 6.7246 -1.0865 12 9 6.0734 7.1374 -2.1348 13 6 4.7141 5.4548 -1.1116 14 6 4.8729 4.6103 -2.2252 15 1 4.9566 3.5427 -2.0857 16 6 4.9221 5.1537 -3.5145 17 7 4.4395 6.3489 -3.7396 18 14 5.6770 4.1725 -4.9135 19 1 4.9276 2.9025 -5.0879 20 1 5.6078 4.9649 -6.1675 21 1 7.0961 3.8705 -4.5969 22 6 4.0754 2.5353 0.0005 23 6 5.4662 2.2955 0.0008 24 7 5.6683 1.0080 0.0005 25 7 4.4383 0.3386 -0.0005 26 1 4.3127 -0.6233 -0.0005 27 6 3.4418 1.2820 -0.0003 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2122 2.3067 0.0006 32 1 1.2979 4.5070 0.0118 33 1 3.1980 5.5829 1.9423 34 1 4.2839 7.7811 1.9443 35 1 5.6370 8.5132 0.0265 36 1 4.4740 6.7255 -4.6328 37 1 6.2356 3.0534 0.0011 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236477537.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:53 Heat of formation + Delta-G solvation = 12.713015 kcal Electronic energy + Delta-G solvation = -25500.958127 eV Core-core repulsion = 21737.637904 eV Total energy + Delta-G solvation = -3763.320223 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.101 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.89914 -42.44531 -39.97588 -39.27963 -36.94308 -35.49200 -33.40846 -31.90052 -31.22008 -30.73803 -29.16063 -27.96147 -26.90415 -24.05386 -23.53196 -22.75488 -22.48959 -21.55818 -19.41349 -19.20964 -18.33803 -17.28905 -17.21641 -16.90270 -16.72846 -16.32408 -16.02925 -15.93844 -15.61877 -15.46075 -15.23450 -14.99573 -14.49926 -14.25085 -13.72508 -13.35263 -13.25252 -13.16564 -13.03377 -12.85074 -12.64547 -12.40874 -12.36696 -12.08159 -11.94866 -11.83498 -11.64988 -11.22563 -10.93781 -10.79329 -9.59376 -9.31500 -9.01769 -8.68126 -8.27768 -6.32199 -0.08516 0.55810 0.90260 0.98935 1.32706 1.40994 1.45844 1.59901 1.81892 2.18551 2.36344 2.73317 2.87164 3.49626 3.73614 3.78743 4.03022 4.19530 4.22605 4.34366 4.42840 4.46271 4.48659 4.54304 4.67509 4.80354 4.82891 4.94461 4.97184 5.20132 5.30043 5.31852 5.43130 5.68572 5.70537 5.77421 5.88018 6.05592 6.08659 6.25680 6.34082 6.52105 6.55967 6.67184 6.89425 7.00075 8.33126 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.005856 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.299346 B = 4780.070934 C = 5616.205184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.084 3.916 4 C -0.149 4.149 5 C -0.129 4.129 6 C 0.043 3.957 7 C -0.152 4.152 8 C -0.083 4.083 9 C -0.201 4.201 10 C -0.139 4.139 11 C 0.001 3.999 12 F -0.160 7.160 13 C 0.085 3.915 14 C -0.481 4.481 15 H 0.084 0.916 16 C 0.047 3.953 17 N -0.809 5.809 18 Si 0.953 3.047 19 H -0.266 1.266 20 H -0.268 1.268 21 H -0.264 1.264 22 C -0.146 4.146 23 C 0.081 3.919 24 N -0.270 5.270 25 N -0.497 5.497 26 H 0.450 0.550 27 C 0.096 3.904 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.069 0.931 31 H 0.166 0.834 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.136 0.864 35 H 0.117 0.883 36 H 0.286 0.714 37 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 -8.139 6.741 13.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.036 3.964 4 C -0.171 4.171 5 C -0.149 4.149 6 C 0.040 3.960 7 C -0.153 4.153 8 C -0.101 4.101 9 C -0.220 4.220 10 C -0.158 4.158 11 C -0.019 4.019 12 F -0.139 7.139 13 C 0.082 3.918 14 C -0.510 4.510 15 H 0.102 0.898 16 C -0.171 4.171 17 N -0.434 5.434 18 Si 0.776 3.224 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.188 1.188 22 C -0.154 4.154 23 C -0.113 4.113 24 N -0.086 5.086 25 N -0.215 5.215 26 H 0.297 0.703 27 C -0.021 4.021 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.087 0.913 31 H 0.183 0.817 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.135 0.865 36 H 0.096 0.904 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -6.789 -9.105 6.505 13.088 hybrid contribution -0.146 0.367 -1.268 1.328 sum -6.934 -8.738 5.237 12.324 Atomic orbital electron populations 1.23340 0.76160 1.05529 1.02423 1.85924 1.23685 1.25851 1.89619 1.17863 0.87424 0.86002 1.05095 1.21146 1.00874 0.90185 1.04845 1.20981 0.92722 0.97855 1.03314 1.18170 0.92412 0.90133 0.95326 1.18665 1.04172 0.95215 0.97265 1.20997 0.98935 0.93482 0.96706 1.20497 1.04379 0.97995 0.99105 1.20954 1.01826 0.98933 0.94068 1.18164 1.00518 0.97522 0.85682 1.91273 1.74581 1.90436 1.57593 1.17683 0.89904 0.90839 0.93374 1.19423 1.45540 0.95411 0.90614 0.89849 1.26415 0.92987 0.95492 1.02177 1.69805 1.32310 1.16827 1.24444 0.85666 0.79989 0.79141 0.77631 1.19077 1.19193 1.18827 1.18827 0.93226 0.92409 1.10968 1.23865 0.95869 0.93170 0.98444 1.76644 1.04592 1.07049 1.20333 1.45890 1.00716 1.08288 1.66598 0.70323 1.18215 0.88938 0.90010 1.04956 0.92006 0.86176 0.91270 0.81691 0.84715 0.85437 0.84650 0.86482 0.90376 0.79412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.80 113.37 1.11 1.41 16 2 O -0.34 -8.55 10.49 -91.42 -0.96 -9.50 16 3 C 0.08 2.59 6.71 22.71 0.15 2.74 16 4 C -0.15 -4.26 9.01 22.34 0.20 -4.06 16 5 C -0.13 -4.43 9.70 22.52 0.22 -4.21 16 6 C 0.04 1.72 4.71 -19.82 -0.09 1.63 16 7 C -0.15 -6.68 5.23 -19.65 -0.10 -6.78 16 8 C -0.08 -3.21 9.71 22.47 0.22 -3.00 16 9 C -0.20 -7.65 10.02 22.36 0.22 -7.42 16 10 C -0.14 -6.04 9.99 22.29 0.22 -5.82 16 11 C 0.00 0.07 6.67 22.81 0.15 0.22 16 12 F -0.16 -8.72 14.26 44.97 0.64 -8.08 16 13 C 0.09 4.32 5.42 -21.05 -0.11 4.20 16 14 C -0.48 -25.23 8.00 23.29 0.19 -25.05 16 15 H 0.08 4.34 5.38 -2.92 -0.02 4.32 16 16 C 0.05 2.41 4.50 85.27 0.38 2.80 16 17 N -0.81 -43.57 11.12 21.84 0.24 -43.32 16 18 Si 0.95 40.93 29.61 68.60 2.03 42.96 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 22 C -0.15 -5.81 4.89 -21.22 -0.10 -5.92 16 23 C 0.08 3.18 10.49 85.63 0.90 4.08 16 24 N -0.27 -9.97 12.58 -56.45 -0.71 -10.68 16 25 N -0.50 -16.37 7.45 -51.34 -0.38 -16.75 16 26 H 0.45 11.79 8.96 -213.36 -1.91 9.88 16 27 C 0.10 3.40 7.26 39.22 0.28 3.69 16 28 H 0.06 0.89 7.65 -2.39 -0.02 0.87 16 29 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 0.88 7.65 -2.39 -0.02 0.87 16 31 H 0.17 3.35 6.24 -2.92 -0.02 3.33 16 32 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 33 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 34 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 35 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.29 14.29 8.30 -92.71 -0.77 13.52 16 37 H 0.19 7.31 8.06 -2.91 -0.02 7.29 16 Total: -1.00 -63.74 321.57 3.94 -59.80 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.77 Total: 27.05 kcal Atomic # 6 Polarization: -45.31 SS G_CDS: 3.84 Total: -41.47 kcal Atomic # 7 Polarization: -69.91 SS G_CDS: -0.85 Total: -70.76 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.96 Total: -9.50 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 0.64 Total: -8.08 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -63.74 3.94 -59.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236477537.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.517 kcal (2) G-P(sol) polarization free energy of solvation -63.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds