Wall clock time and date at job start Tue Mar 31 2020 11:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99663 * 2 1 4 4 H 1.48500 * 109.47338 * 269.99807 * 3 2 1 5 5 H 1.48502 * 109.47428 * 30.00400 * 3 2 1 6 6 H 1.48497 * 109.47078 * 149.99888 * 3 2 1 7 7 C 1.37877 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00308 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99315 * 179.97438 * 7 2 1 10 10 C 1.53011 * 109.46739 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.46664 * 55.00147 * 10 9 7 12 12 N 1.46504 * 109.47027 * 295.00342 * 10 9 7 13 13 C 1.34772 * 119.99832 * 155.00222 * 12 10 9 14 14 O 1.21550 * 120.00152 * 359.97438 * 13 12 10 15 15 C 1.47826 * 120.00049 * 179.97438 * 13 12 10 16 16 N 1.32869 * 119.78236 * 359.97438 * 15 13 12 17 17 C 1.31372 * 121.69602 * 179.97438 * 16 15 13 18 18 C 1.38774 * 121.06668 * 0.02562 * 17 16 15 19 19 C 1.38302 * 119.44542 * 0.27535 * 18 17 16 20 20 C 1.39341 * 118.43625 * 359.43458 * 19 18 17 21 21 O 1.35654 * 120.54043 * 180.28508 * 20 19 18 22 22 C 1.50692 * 109.47143 * 175.00274 * 10 9 7 23 23 C 1.38239 * 120.00247 * 79.72349 * 22 10 9 24 24 C 1.38237 * 120.00107 * 179.80658 * 23 22 10 25 25 C 1.38232 * 119.99869 * 0.40523 * 24 23 22 26 26 C 1.38238 * 120.00348 * 359.85344 * 25 24 23 27 27 C 1.38235 * 120.00200 * 260.00041 * 22 10 9 28 28 H 0.97003 * 120.00371 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47581 * 60.00649 * 9 7 2 30 30 H 1.08999 * 109.47588 * 299.99947 * 9 7 2 31 31 H 0.97005 * 119.99883 * 334.99443 * 12 10 9 32 32 H 1.07996 * 119.46605 * 180.02562 * 17 16 15 33 33 H 1.08002 * 120.27363 * 179.97438 * 18 17 16 34 34 H 1.07996 * 120.78054 * 179.70033 * 19 18 17 35 35 H 0.96701 * 114.00160 * 270.30801 * 21 20 19 36 36 H 1.08002 * 119.99728 * 0.02562 * 23 22 10 37 37 H 1.07995 * 119.99820 * 180.23236 * 24 23 22 38 38 H 1.07997 * 120.00275 * 179.82658 * 25 24 23 39 39 H 1.07995 * 120.00448 * 179.97438 * 26 25 24 40 40 H 1.08010 * 119.99696 * 359.97438 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0216 -2.6365 0.0001 11 1 3.5867 -3.1756 -0.8415 12 7 3.6345 -3.2912 1.2522 13 6 3.5078 -4.6321 1.3003 14 8 3.7142 -5.2982 0.3047 15 6 3.1177 -5.2929 2.5638 16 7 2.8935 -4.5606 3.6496 17 6 2.5447 -5.1084 4.7916 18 6 2.3958 -6.4830 4.9106 19 6 2.6239 -7.2893 3.8104 20 6 2.9868 -6.6848 2.6085 21 8 3.2152 -7.4345 1.5013 22 6 5.5234 -2.6383 -0.1243 23 6 6.3092 -2.3911 0.9859 24 6 7.6869 -2.3967 0.8726 25 6 8.2787 -2.6412 -0.3525 26 6 7.4929 -2.8830 -1.4638 27 6 6.1152 -2.8814 -1.3496 28 1 -0.4851 0.8400 0.0004 29 1 3.8752 -0.6796 0.8895 30 1 3.8746 -0.6807 -0.8905 31 1 3.4695 -2.7596 2.0466 32 1 2.3709 -4.4788 5.6517 33 1 2.1089 -6.9197 5.8558 34 1 2.5191 -8.3619 3.8800 35 1 4.1325 -7.7249 1.4052 36 1 5.8468 -2.1972 1.9424 37 1 8.3008 -2.2074 1.7407 38 1 9.3550 -2.6428 -0.4416 39 1 7.9552 -3.0736 -2.4210 40 1 5.5012 -3.0704 -2.2179 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132749386.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:08 Heat of formation + Delta-G solvation = -15.179029 kcal Electronic energy + Delta-G solvation = -25281.071136 eV Core-core repulsion = 21640.001728 eV Total energy + Delta-G solvation = -3641.069408 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73086 -39.37752 -38.14834 -37.24161 -35.19677 -32.81104 -32.41379 -31.13047 -30.55959 -30.15614 -29.23615 -25.49534 -24.24830 -23.30140 -22.32323 -21.74721 -20.78456 -19.72195 -18.49450 -17.79578 -17.11661 -16.86150 -16.31872 -15.73083 -15.40264 -15.16167 -14.85544 -14.35277 -14.29258 -14.07153 -13.64913 -13.33543 -13.17116 -13.07840 -12.77520 -12.72073 -12.56286 -12.37664 -11.76964 -11.41156 -11.32243 -11.08206 -10.71844 -10.61889 -10.16516 -10.00448 -9.92237 -9.81033 -9.32103 -9.21392 -8.99330 -8.62215 -8.56873 -8.42427 -8.29203 -6.06243 -4.05787 0.59612 1.02259 1.68057 1.71512 3.01325 3.29000 3.37040 3.39594 3.52488 3.83432 4.04917 4.16188 4.32342 4.42114 4.65767 4.83018 4.88042 5.17671 5.20016 5.27187 5.27657 5.33130 5.42135 5.47611 5.82209 5.82831 5.84769 5.85462 6.06878 6.24980 6.31660 6.35720 6.44734 6.74892 6.76892 6.82822 6.95531 7.08192 7.31056 7.35399 7.51790 7.68720 7.71257 8.16393 8.48610 8.72784 8.99963 9.54228 11.06685 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.009212 B = 0.005583 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3038.765419 B = 5014.153840 C = 7006.650709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.075 0.925 9 C -0.013 4.013 10 C 0.193 3.807 11 H 0.094 0.906 12 N -0.679 5.679 13 C 0.565 3.435 14 O -0.528 6.528 15 C 0.061 3.939 16 N -0.436 5.436 17 C 0.088 3.912 18 C -0.140 4.140 19 C -0.115 4.115 20 C 0.116 3.884 21 O -0.469 6.469 22 C -0.076 4.076 23 C -0.109 4.109 24 C -0.125 4.125 25 C -0.133 4.133 26 C -0.123 4.123 27 C -0.106 4.106 28 H 0.263 0.737 29 H 0.024 0.976 30 H 0.030 0.970 31 H 0.411 0.589 32 H 0.165 0.835 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.395 0.605 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.366 -11.529 9.032 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.094 0.906 9 C -0.051 4.051 10 C 0.088 3.912 11 H 0.112 0.888 12 N -0.328 5.328 13 C 0.349 3.651 14 O -0.404 6.404 15 C -0.078 4.078 16 N -0.149 5.149 17 C -0.072 4.072 18 C -0.160 4.160 19 C -0.142 4.142 20 C 0.067 3.933 21 O -0.278 6.278 22 C -0.078 4.078 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.151 4.151 26 C -0.141 4.141 27 C -0.125 4.125 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.247 0.753 32 H 0.182 0.818 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.252 0.748 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.858 -10.883 8.074 18.007 hybrid contribution 0.520 0.212 0.621 0.837 sum 12.378 -10.670 8.695 18.512 Atomic orbital electron populations 1.69914 1.06264 1.26870 1.50594 1.24979 0.94683 0.98947 0.94478 0.86852 0.80381 0.83871 0.78631 1.20231 1.21362 1.18942 1.21009 0.88642 0.94727 1.51317 0.90643 1.19876 0.97880 0.89678 0.97671 1.20026 0.87684 0.96547 0.86911 0.88837 1.45754 1.66867 1.05759 1.14387 1.17644 0.78228 0.82988 0.86252 1.90776 1.50819 1.64336 1.34483 1.21946 1.00880 0.90947 0.94018 1.67663 1.08837 1.39692 0.98667 1.22857 0.96098 0.92924 0.95370 1.22282 0.99308 0.94931 0.99464 1.21961 0.99281 1.01437 0.91496 1.19417 0.97471 0.89551 0.86849 1.84787 1.33152 1.69499 1.40378 1.20567 0.96814 0.96899 0.93484 1.20970 0.93382 0.99730 0.98597 1.21050 0.94799 1.01102 0.97397 1.21016 0.99226 1.01708 0.93197 1.21058 0.93813 1.00868 0.98346 1.21050 0.94651 0.99386 0.97412 0.92689 0.95742 0.95151 0.75274 0.81806 0.84071 0.83802 0.74755 0.86391 0.86686 0.86780 0.86489 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.52 -14.37 9.39 -34.44 -0.32 -14.70 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 10 C 0.19 3.96 2.11 -69.08 -0.15 3.81 16 11 H 0.09 2.10 7.44 -51.93 -0.39 1.72 16 12 N -0.68 -13.29 4.03 -55.88 -0.23 -13.51 16 13 C 0.57 11.02 7.76 -12.34 -0.10 10.92 16 14 O -0.53 -11.32 14.80 -16.63 -0.25 -11.57 16 15 C 0.06 1.01 6.76 -82.88 -0.56 0.45 16 16 N -0.44 -6.61 9.54 -9.71 -0.09 -6.70 16 17 C 0.09 0.98 11.17 -17.55 -0.20 0.79 16 18 C -0.14 -1.27 10.10 -39.36 -0.40 -1.67 16 19 C -0.12 -1.20 10.13 -39.15 -0.40 -1.60 16 20 C 0.12 1.64 6.74 -38.56 -0.26 1.38 16 21 O -0.47 -6.64 11.58 -40.61 -0.47 -7.12 16 22 C -0.08 -1.38 4.91 -104.63 -0.51 -1.90 16 23 C -0.11 -1.78 9.32 -39.58 -0.37 -2.15 16 24 C -0.13 -1.78 10.05 -39.58 -0.40 -2.17 16 25 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 26 C -0.12 -1.75 10.05 -39.58 -0.40 -2.14 16 27 C -0.11 -1.77 9.67 -39.58 -0.38 -2.15 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.02 0.56 7.20 -51.93 -0.37 0.18 16 30 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 31 H 0.41 7.85 7.93 -40.82 -0.32 7.52 16 32 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.39 3.90 9.06 45.56 0.41 4.31 16 36 H 0.12 1.85 7.73 -52.49 -0.41 1.45 16 37 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.12 1.94 8.04 -52.48 -0.42 1.52 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -34.69 348.97 -8.72 -43.41 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -4.01 Total: 12.04 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -5.03 Total: -11.81 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.46 Total: -46.84 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.72 Total: -18.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.69 -8.72 -43.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132749386.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.230 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds