Wall clock time and date at job start Tue Mar 31 2020 09:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34779 * 117.00477 * 2 1 4 4 O 1.21537 * 120.00210 * 359.97438 * 3 2 1 5 5 C 1.47269 * 120.00473 * 180.02562 * 3 2 1 6 6 C 1.39942 * 120.04860 * 359.97055 * 5 3 2 7 7 C 1.36399 * 120.18463 * 180.02562 * 6 5 3 8 8 C 1.39957 * 120.28738 * 0.02562 * 7 6 5 9 9 C 1.47769 * 119.95395 * 179.97438 * 8 7 6 10 10 C 1.39212 * 120.33929 * 129.99246 * 9 8 7 11 11 C 1.38087 * 119.98003 * 179.97438 * 10 9 8 12 12 C 1.38934 * 120.67776 * 0.02562 * 11 10 9 13 13 C 1.36444 * 120.69606 * 0.02562 * 12 11 10 14 14 C 1.40759 * 119.99087 * 359.69724 * 13 12 11 15 15 C 1.40830 * 120.33527 * 180.29926 * 14 13 12 16 16 H 1.08000 * 120.00199 * 149.54223 * 15 14 13 17 17 C 1.40156 * 119.99572 * 329.54397 * 15 14 13 18 18 N 1.30724 * 119.99317 * 162.42710 * 17 15 14 19 19 Si 1.86793 * 120.00287 * 342.42499 * 17 15 14 20 20 H 1.48494 * 109.47311 * 95.38052 * 19 17 15 21 21 H 1.48509 * 109.47058 * 215.38099 * 19 17 15 22 22 H 1.48499 * 109.46894 * 335.37878 * 19 17 15 23 23 C 1.39545 * 120.09245 * 359.69776 * 8 7 6 24 24 C 1.38366 * 119.81727 * 0.55587 * 23 8 7 25 25 O 1.35667 * 120.14126 * 179.74860 * 24 23 8 26 26 C 1.42898 * 116.99742 * 359.72251 * 25 24 23 27 27 H 1.09003 * 109.46939 * 300.01191 * 1 2 3 28 28 H 1.09006 * 109.46894 * 60.00269 * 1 2 3 29 29 H 1.08995 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.90578 * 0.04195 * 6 5 3 31 31 H 1.07998 * 119.85715 * 179.97438 * 7 6 5 32 32 H 1.07998 * 120.01307 * 0.02562 * 10 9 8 33 33 H 1.07997 * 119.66167 * 179.97438 * 11 10 9 34 34 H 1.08000 * 119.64690 * 180.02562 * 12 11 10 35 35 H 1.08000 * 119.99806 * 179.97438 * 13 12 11 36 36 H 0.97008 * 119.99329 * 180.02562 * 18 17 15 37 37 H 1.07999 * 120.09027 * 180.30145 * 23 8 7 38 38 H 1.09004 * 109.46824 * 179.97438 * 26 25 24 39 39 H 1.08996 * 109.47363 * 60.00430 * 26 25 24 40 40 H 1.09000 * 109.47132 * 299.99437 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4021 2.2202 -0.0005 5 6 3.5346 1.2779 -0.0006 6 6 4.2978 0.1049 -0.0005 7 6 5.6601 0.1731 -0.0005 8 6 6.3046 1.4154 0.0000 9 6 7.7809 1.4806 0.0005 10 6 8.4497 2.2832 -0.9195 11 6 9.8294 2.3390 -0.9120 12 6 10.5637 1.5998 0.0070 13 6 9.9367 0.8033 0.9203 14 6 8.5313 0.7294 0.9421 15 6 7.8764 -0.0855 1.8858 16 1 6.8976 0.1896 2.2499 17 6 8.4951 -1.2533 2.3523 18 7 8.0734 -1.8219 3.4513 19 14 9.9221 -1.9972 1.4039 20 1 11.2036 -1.5204 1.9831 21 1 9.8584 -3.4782 1.4947 22 1 9.8385 -1.5846 -0.0202 23 6 5.5552 2.5925 -0.0059 24 6 4.1731 2.5281 -0.0006 25 8 3.4380 3.6684 -0.0011 26 6 4.1567 4.9035 -0.0012 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 3.8067 -0.8570 -0.0007 31 1 6.2438 -0.7355 0.0000 32 1 7.8896 2.8627 -1.6385 33 1 10.3429 2.9631 -1.6284 34 1 11.6422 1.6563 -0.0018 35 1 10.5187 0.2332 1.6293 36 1 8.5019 -2.6301 3.7744 37 1 6.0527 3.5511 -0.0105 38 1 3.4512 5.7344 -0.0021 39 1 4.7838 4.9589 -0.8910 40 1 4.7832 4.9594 0.8890 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240443981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:09 Heat of formation + Delta-G solvation = -92.873968 kcal Electronic energy + Delta-G solvation = -25263.829512 eV Core-core repulsion = 21587.098248 eV Total energy + Delta-G solvation = -3676.731264 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.119 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76789 -40.65721 -39.75872 -38.08207 -37.30813 -35.56755 -33.68933 -32.37883 -31.14882 -30.53829 -28.75928 -27.93106 -27.08069 -25.04086 -23.50293 -22.61102 -22.34488 -21.48985 -19.43014 -19.10931 -18.52798 -17.88383 -17.43066 -17.36463 -16.84851 -16.60280 -16.27527 -15.74088 -15.60135 -15.56307 -15.01987 -14.54502 -14.47727 -14.32809 -14.26263 -13.82985 -13.51577 -13.36744 -13.17983 -12.96660 -12.74874 -12.64465 -12.42929 -12.27461 -12.21616 -11.89319 -11.74510 -11.61285 -11.53811 -11.29554 -11.00003 -10.17725 -9.50494 -9.37042 -9.06223 -8.89159 -6.44421 -0.38974 0.50333 0.76949 0.88536 1.29046 1.41085 1.50773 1.63663 1.77822 2.12141 2.26534 2.62338 2.81443 3.50741 3.73490 3.85407 3.98004 4.22010 4.31792 4.34079 4.35707 4.37028 4.37944 4.42377 4.44617 4.55428 4.69476 4.71184 4.75247 4.80462 4.96239 5.02489 5.14411 5.28155 5.32157 5.39867 5.53826 5.65645 5.70459 5.89252 5.95121 6.03605 6.24378 6.35394 6.41833 6.74461 6.79741 6.82905 8.16680 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.004634 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.286457 B = 6040.945152 C = 7467.587306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.515 3.485 4 O -0.526 6.526 5 C -0.209 4.209 6 C -0.023 4.023 7 C -0.156 4.156 8 C 0.080 3.920 9 C -0.194 4.194 10 C -0.058 4.058 11 C -0.233 4.233 12 C -0.074 4.074 13 C -0.250 4.250 14 C 0.093 3.907 15 C -0.457 4.457 16 H 0.064 0.936 17 C 0.053 3.947 18 N -0.837 5.837 19 Si 0.957 3.043 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.250 1.250 23 C -0.229 4.229 24 C 0.187 3.813 25 O -0.309 6.309 26 C 0.013 3.987 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.134 0.866 30 H 0.154 0.846 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.294 0.706 37 H 0.151 0.849 38 H 0.122 0.878 39 H 0.071 0.929 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.456 4.632 -7.872 10.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.280 6.280 3 C 0.362 3.638 4 O -0.417 6.417 5 C -0.211 4.211 6 C -0.041 4.041 7 C -0.175 4.175 8 C 0.079 3.921 9 C -0.195 4.195 10 C -0.075 4.075 11 C -0.252 4.252 12 C -0.092 4.092 13 C -0.269 4.269 14 C 0.091 3.909 15 C -0.486 4.486 16 H 0.082 0.918 17 C -0.163 4.163 18 N -0.462 5.462 19 Si 0.781 3.219 20 H -0.186 1.186 21 H -0.207 1.207 22 H -0.174 1.174 23 C -0.248 4.248 24 C 0.140 3.860 25 O -0.221 6.221 26 C -0.082 4.082 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.152 0.848 30 H 0.172 0.828 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.169 0.831 38 H 0.140 0.860 39 H 0.089 0.911 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.959 4.760 -7.636 10.792 hybrid contribution 0.516 -0.402 0.378 0.755 sum -5.443 4.358 -7.258 10.065 Atomic orbital electron populations 1.23549 0.74480 1.05718 1.02491 1.86553 1.25167 1.31846 1.84413 1.20935 0.88825 0.81544 0.72481 1.90810 1.67005 1.36476 1.47417 1.18491 0.89468 0.92395 1.20705 1.20995 0.93144 0.97365 0.92558 1.21008 0.94120 0.98190 1.04142 1.18955 0.92746 0.92342 0.88037 1.18844 0.90698 1.08354 1.01611 1.21066 0.94694 0.95399 0.96391 1.20805 0.93568 1.06829 1.03952 1.20842 0.99682 0.94770 0.93951 1.20931 0.94445 1.07021 1.04499 1.17770 0.91849 0.91072 0.90256 1.19368 1.03940 1.06114 1.19147 0.91832 1.26792 0.98858 0.96895 0.93780 1.69682 1.39880 1.18493 1.18119 0.85600 0.78441 0.76604 0.81234 1.18618 1.20668 1.17352 1.21390 0.91161 0.99819 1.12393 1.18932 0.89755 0.85830 0.91502 1.86252 1.35565 1.13281 1.86977 1.23442 0.99037 0.83190 1.02491 0.92191 0.91757 0.84790 0.82835 0.85771 0.85657 0.85020 0.85652 0.88475 0.89505 0.83134 0.85977 0.91075 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.57 113.37 1.20 1.84 16 2 O -0.36 -10.84 9.80 -56.90 -0.56 -11.40 16 3 C 0.51 18.35 7.88 70.20 0.55 18.90 16 4 O -0.53 -20.54 14.94 26.74 0.40 -20.14 16 5 C -0.21 -7.68 5.89 -19.97 -0.12 -7.79 16 6 C -0.02 -0.81 9.54 22.25 0.21 -0.59 16 7 C -0.16 -6.23 8.02 22.26 0.18 -6.05 16 8 C 0.08 3.19 4.94 -20.02 -0.10 3.09 16 9 C -0.19 -8.21 5.52 -19.61 -0.11 -8.32 16 10 C -0.06 -2.09 9.49 22.47 0.21 -1.87 16 11 C -0.23 -8.01 10.03 22.40 0.22 -7.79 16 12 C -0.07 -2.78 9.96 22.02 0.22 -2.56 16 13 C -0.25 -10.99 7.10 22.47 0.16 -10.83 16 14 C 0.09 4.41 5.09 -21.12 -0.11 4.30 16 15 C -0.46 -23.66 7.50 23.37 0.18 -23.49 16 16 H 0.06 3.62 7.04 -2.91 -0.02 3.60 16 17 C 0.05 2.67 5.41 85.32 0.46 3.13 16 18 N -0.84 -43.51 13.92 21.86 0.30 -43.20 16 19 Si 0.96 40.25 24.52 68.60 1.68 41.94 16 20 H -0.26 -10.45 6.72 99.48 0.67 -9.79 16 21 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.25 -10.69 6.85 99.48 0.68 -10.01 16 23 C -0.23 -8.12 8.49 22.62 0.19 -7.93 16 24 C 0.19 6.77 6.70 22.82 0.15 6.92 16 25 O -0.31 -10.42 8.55 -68.84 -0.59 -11.01 16 26 C 0.01 0.29 9.81 113.37 1.11 1.40 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.15 4.76 7.59 -2.91 -0.02 4.74 16 31 H 0.12 5.23 7.31 -2.91 -0.02 5.20 16 32 H 0.13 3.81 8.03 -2.91 -0.02 3.78 16 33 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 35 H 0.10 4.30 4.77 -2.91 -0.01 4.28 16 36 H 0.29 13.80 8.29 -92.70 -0.77 13.03 16 37 H 0.15 4.62 6.28 -2.91 -0.02 4.60 16 38 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.07 1.41 7.65 -2.39 -0.02 1.39 16 40 H 0.06 1.36 7.67 -2.39 -0.02 1.34 16 Total: -1.00 -62.76 337.64 6.87 -55.89 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 1.01 Total: 25.56 kcal Atomic # 6 Polarization: -42.25 SS G_CDS: 4.62 Total: -37.63 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.30 Total: -43.20 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -0.75 Total: -42.55 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 1.68 Total: 41.94 kcal Total: -62.76 6.87 -55.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240443981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.985 kcal (2) G-P(sol) polarization free energy of solvation -62.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds