Wall clock time and date at job start Tue Mar 31 2020 09:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86801 * 119.99501 * 2 1 4 4 H 1.48501 * 109.46824 * 239.99546 * 3 2 1 5 5 H 1.48497 * 109.47320 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46970 * 119.99896 * 3 2 1 7 7 C 1.39894 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99859 * 164.82348 * 7 2 1 9 9 C 1.41159 * 119.99797 * 345.09715 * 7 2 1 10 10 C 1.40865 * 120.16631 * 334.71221 * 9 7 2 11 11 C 1.36374 * 119.82555 * 179.76512 * 10 9 7 12 12 C 1.39476 * 120.16993 * 0.53031 * 11 10 9 13 13 N 1.39242 * 119.83489 * 179.71639 * 12 11 10 14 14 C 1.34773 * 119.99650 * 35.82482 * 13 12 11 15 15 O 1.21583 * 120.00272 * 355.51977 * 14 13 12 16 16 N 1.34778 * 119.99878 * 175.51867 * 14 13 12 17 17 C 1.46500 * 120.00187 * 180.02562 * 16 14 13 18 18 H 1.08998 * 115.55051 * 9.33088 * 17 16 14 19 19 C 1.53002 * 117.49775 * 223.61980 * 17 16 14 20 20 C 1.52996 * 59.99917 * 252.50935 * 19 17 16 21 21 H 1.08997 * 117.51952 * 107.48298 * 20 19 17 22 22 C 1.50700 * 117.50222 * 252.51097 * 20 19 17 23 23 C 1.34515 * 125.79369 * 188.62631 * 22 20 19 24 24 C 1.41386 * 106.84154 * 180.02562 * 23 22 20 25 25 C 1.34512 * 106.84146 * 359.97438 * 24 23 22 26 26 O 1.34305 * 125.78610 * 8.31624 * 22 20 19 27 27 C 1.39478 * 120.33316 * 359.70233 * 12 11 10 28 28 C 1.36376 * 120.16822 * 0.03669 * 27 12 11 29 29 H 0.96996 * 120.00431 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.08403 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.91341 * 180.25657 * 11 10 9 32 32 H 0.97000 * 120.00320 * 215.82638 * 13 12 11 33 33 H 0.97001 * 120.00093 * 0.02562 * 16 14 13 34 34 H 1.08990 * 117.49875 * 0.02562 * 19 17 16 35 35 H 1.08999 * 117.49397 * 145.02130 * 19 17 16 36 36 H 1.08004 * 126.57796 * 359.96216 * 23 22 20 37 37 H 1.08001 * 126.57754 * 180.02562 * 24 23 22 38 38 H 1.07993 * 125.78790 * 180.02562 * 25 24 23 39 39 H 1.08001 * 119.91846 * 180.02562 * 27 12 11 40 40 H 1.08000 * 120.08682 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6964 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0600 -1.2279 -0.2443 9 6 1.3381 -2.4133 0.3155 10 6 0.1803 -2.3889 1.1175 11 6 -0.4644 -3.5535 1.4135 12 6 0.0261 -4.7678 0.9335 13 7 -0.6344 -5.9534 1.2449 14 6 -1.9792 -5.9728 1.3314 15 8 -2.6107 -4.9400 1.2182 16 7 -2.6241 -7.1372 1.5432 17 6 -4.0860 -7.1585 1.6367 18 1 -4.5878 -6.2287 1.3688 19 6 -4.7105 -8.0041 2.7484 20 6 -4.7968 -8.4691 1.2934 21 1 -4.1769 -9.3154 0.9976 22 6 -6.1373 -8.3757 0.6112 23 6 -6.4424 -8.8828 -0.5967 24 6 -7.7978 -8.5654 -0.8438 25 6 -8.2402 -7.8839 0.2282 26 8 -7.2317 -7.7770 1.1089 27 6 1.1747 -4.8004 0.1429 28 6 1.8272 -3.6434 -0.1659 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1982 -1.4498 1.4934 31 1 -1.3546 -3.5360 2.0248 32 1 -0.1267 -6.7653 1.3996 33 1 -2.1203 -7.9612 1.6339 34 1 -4.0338 -8.5441 3.4105 35 1 -5.6234 -7.6304 3.2123 36 1 -5.7789 -9.4270 -1.2526 37 1 -8.3688 -8.8218 -1.7240 38 1 -9.2382 -7.4931 0.3604 39 1 1.5484 -5.7444 -0.2255 40 1 2.7167 -3.6703 -0.7778 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413856411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:21 Heat of formation + Delta-G solvation = 41.785924 kcal Electronic energy + Delta-G solvation = -23872.190870 eV Core-core repulsion = 20233.591648 eV Total energy + Delta-G solvation = -3638.599222 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.74299 -39.98997 -38.03880 -36.94322 -34.39109 -33.30793 -33.13150 -32.46309 -29.53806 -29.38536 -28.71290 -25.01209 -23.45385 -22.62187 -21.85288 -21.29398 -20.95348 -20.39651 -19.98571 -18.21560 -17.36271 -17.26509 -16.91426 -16.06824 -15.67092 -15.20180 -14.97781 -14.80558 -14.11449 -13.85748 -13.44082 -13.11732 -13.04411 -12.98592 -12.72262 -12.64608 -12.11468 -12.02221 -11.86443 -11.63248 -11.40289 -11.07396 -10.93464 -10.90061 -10.46707 -10.07491 -10.00623 -9.86467 -9.52184 -9.20010 -8.98744 -8.66218 -8.34661 -7.46974 -6.95574 -6.67319 -4.25578 1.49097 2.39854 2.65686 2.74003 2.98172 3.09828 3.11041 3.12926 3.19794 3.49918 3.87532 3.96979 4.32479 4.47419 4.55836 4.68178 4.71612 4.79361 4.89028 5.07602 5.41657 5.60694 5.70240 5.72787 5.78107 5.79561 5.92263 6.18156 6.30796 6.43682 6.53209 6.84191 6.87107 6.96314 7.09550 7.14865 7.33201 7.38358 7.66901 7.88001 8.05143 8.10688 8.31476 8.48982 8.68913 8.93428 8.95725 9.12562 10.24953 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.002402 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.179465 B =11654.525466 C =12312.081791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.104 3.896 10 C -0.156 4.156 11 C -0.086 4.086 12 C 0.009 3.991 13 N -0.664 5.664 14 C 0.697 3.303 15 O -0.570 6.570 16 N -0.723 5.723 17 C 0.132 3.868 18 H 0.143 0.857 19 C -0.181 4.181 20 C -0.097 4.097 21 H 0.135 0.865 22 C 0.025 3.975 23 C -0.207 4.207 24 C -0.213 4.213 25 C -0.043 4.043 26 O -0.174 6.174 27 C -0.106 4.106 28 C -0.216 4.216 29 H 0.281 0.719 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.391 0.609 33 H 0.394 0.606 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.203 0.797 39 H 0.089 0.911 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.703 -16.910 2.840 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.102 3.898 10 C -0.176 4.176 11 C -0.106 4.106 12 C -0.083 4.083 13 N -0.310 5.310 14 C 0.398 3.602 15 O -0.445 6.445 16 N -0.377 5.377 17 C 0.024 3.976 18 H 0.160 0.840 19 C -0.220 4.220 20 C -0.117 4.117 21 H 0.153 0.847 22 C -0.025 4.025 23 C -0.226 4.226 24 C -0.232 4.232 25 C -0.111 4.111 26 O -0.070 6.070 27 C -0.126 4.126 28 C -0.236 4.236 29 H 0.092 0.908 30 H 0.140 0.860 31 H 0.125 0.875 32 H 0.224 0.776 33 H 0.228 0.772 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.219 0.781 39 H 0.107 0.893 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.480 -15.605 2.978 19.601 hybrid contribution 0.622 -0.328 -0.362 0.791 sum -10.858 -15.933 2.616 19.458 Atomic orbital electron populations 1.69845 1.07474 1.29268 1.35076 1.25937 0.94772 1.01323 0.92473 0.86346 0.80045 0.80292 0.79869 1.19077 1.20367 1.18866 1.19506 0.97090 0.90991 1.41290 0.90517 1.17676 0.91490 0.92051 0.88630 1.21072 0.98491 0.96812 1.01219 1.20580 0.98846 0.91603 0.99550 1.16986 0.98197 0.84267 1.08886 1.42042 1.03836 1.11979 1.73141 1.15959 0.82305 0.83504 0.78450 1.90944 1.66035 1.31045 1.56507 1.44478 1.05178 1.09070 1.79003 1.21474 0.80204 0.95558 1.00379 0.83987 1.23606 1.03930 1.03774 0.90720 1.21034 0.91140 1.01019 0.98507 0.84737 1.21268 0.87344 0.99479 0.94450 1.21517 0.96815 1.06951 0.97290 1.21830 0.95950 1.04599 1.00833 1.24014 0.92968 1.04284 0.89797 1.83982 1.18459 1.61525 1.43052 1.20026 0.96680 0.97156 0.98766 1.20534 1.03307 0.92565 1.07206 0.90785 0.85974 0.87480 0.77644 0.77207 0.87589 0.87315 0.83499 0.83459 0.78078 0.89313 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.20 10.83 55.55 0.60 -20.60 16 2 C 0.07 1.86 5.19 -17.34 -0.09 1.77 16 3 Si 0.91 18.97 29.59 -169.99 -5.03 13.94 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.46 -12.31 9.05 -37.85 -0.34 -12.65 16 8 H 0.08 1.95 7.89 -52.49 -0.41 1.54 16 9 C 0.10 2.83 5.58 -106.80 -0.60 2.23 16 10 C -0.16 -4.25 8.63 -39.26 -0.34 -4.59 16 11 C -0.09 -2.18 8.61 -39.79 -0.34 -2.52 16 12 C 0.01 0.20 6.30 -83.57 -0.53 -0.32 16 13 N -0.66 -11.73 5.31 -14.10 -0.07 -11.80 16 14 C 0.70 12.64 8.39 -86.92 -0.73 11.91 16 15 O -0.57 -13.18 13.35 5.29 0.07 -13.10 16 16 N -0.72 -9.11 5.57 -58.68 -0.33 -9.44 16 17 C 0.13 1.60 6.14 -67.93 -0.42 1.18 16 18 H 0.14 2.15 7.40 -51.93 -0.38 1.77 16 19 C -0.18 -1.67 10.09 -26.73 -0.27 -1.94 16 20 C -0.10 -0.93 6.16 -91.77 -0.57 -1.50 16 21 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 22 C 0.02 0.28 6.80 -35.62 -0.24 0.04 16 23 C -0.21 -2.19 10.81 -39.70 -0.43 -2.62 16 24 C -0.21 -2.04 10.91 -39.70 -0.43 -2.48 16 25 C -0.04 -0.40 12.09 29.42 0.36 -0.05 16 26 O -0.17 -2.01 10.36 5.68 0.06 -1.95 16 27 C -0.11 -2.34 9.90 -39.79 -0.39 -2.73 16 28 C -0.22 -5.29 9.74 -39.26 -0.38 -5.67 16 29 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 30 H 0.12 3.45 6.09 -52.48 -0.32 3.13 16 31 H 0.11 2.76 6.25 -52.49 -0.33 2.43 16 32 H 0.39 5.19 8.83 -40.82 -0.36 4.82 16 33 H 0.39 3.46 8.85 -40.82 -0.36 3.10 16 34 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.11 1.02 7.96 -51.93 -0.41 0.61 16 36 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.20 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -33.03 348.85 -9.86 -42.89 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -4.68 Total: 14.73 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -5.74 Total: -19.93 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.20 Total: -41.84 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.13 Total: -15.05 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.03 -9.86 -42.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413856411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.680 kcal (2) G-P(sol) polarization free energy of solvation -33.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds