Wall clock time and date at job start Tue Mar 31 2020 10:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38093 * 120.35241 * 2 1 4 4 N 1.31927 * 120.83063 * 179.97438 * 3 2 1 5 5 C 1.32278 * 121.65315 * 0.02562 * 4 3 2 6 6 O 1.35672 * 119.68753 * 179.97438 * 5 4 3 7 7 C 1.38876 * 120.62712 * 0.02562 * 5 4 3 8 8 C 1.50699 * 120.44439 * 179.97438 * 7 5 4 9 9 N 1.46498 * 109.47253 * 285.00647 * 8 7 5 10 10 C 1.34783 * 119.99819 * 179.97438 * 9 8 7 11 11 O 1.21586 * 120.00186 * 359.97438 * 10 9 8 12 12 C 1.47642 * 119.99765 * 179.71985 * 10 9 8 13 13 C 1.40015 * 119.89395 * 0.02562 * 12 10 9 14 14 C 1.36321 * 120.10544 * 179.71765 * 13 12 10 15 15 C 1.40895 * 119.88932 * 0.55022 * 14 13 12 16 16 C 1.41108 * 120.10152 * 179.69677 * 15 14 13 17 17 H 1.07992 * 119.99872 * 204.66399 * 16 15 14 18 18 C 1.40225 * 120.00051 * 24.66454 * 16 15 14 19 19 N 1.30654 * 119.99982 * 17.86632 * 18 16 15 20 20 Si 1.86795 * 120.00136 * 197.86918 * 18 16 15 21 21 H 1.48493 * 109.47526 * 59.99350 * 20 18 16 22 22 H 1.48496 * 109.47534 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46856 * 299.99762 * 20 18 16 24 24 C 1.40889 * 119.79304 * 359.72558 * 15 14 13 25 25 C 1.36323 * 119.89189 * 359.97438 * 24 15 14 26 26 C 1.38423 * 119.11543 * 0.27522 * 7 5 4 27 27 H 1.09001 * 109.46911 * 90.00215 * 1 2 3 28 28 H 1.08997 * 109.46710 * 209.99923 * 1 2 3 29 29 H 1.08996 * 109.47462 * 330.00223 * 1 2 3 30 30 H 1.07998 * 119.58457 * 0.02562 * 3 2 1 31 31 H 0.96705 * 113.99725 * 270.02122 * 6 5 4 32 32 H 1.08996 * 109.47570 * 164.99707 * 8 7 5 33 33 H 1.09008 * 109.46759 * 45.00539 * 8 7 5 34 34 H 0.96998 * 119.99837 * 359.97438 * 9 8 7 35 35 H 1.07996 * 119.94843 * 359.97438 * 13 12 10 36 36 H 1.07994 * 120.05729 * 180.27717 * 14 13 12 37 37 H 0.97000 * 119.99535 * 180.02562 * 19 18 16 38 38 H 1.07996 * 120.04925 * 179.97438 * 24 15 14 39 39 H 1.07994 * 119.94393 * 179.97438 * 25 24 15 40 40 H 1.07999 * 120.75591 * 179.72638 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2049 1.1917 0.0000 4 7 3.5241 1.2027 0.0005 5 6 4.2276 0.0825 0.0005 6 8 5.5831 0.1403 0.0005 7 6 3.5920 -1.1522 -0.0005 8 6 4.3975 -2.4258 -0.0011 9 7 4.9613 -2.6465 -1.3351 10 6 5.7241 -3.7319 -1.5732 11 8 5.9446 -4.5277 -0.6808 12 6 6.2872 -3.9575 -2.9193 13 6 6.0278 -3.0422 -3.9466 14 6 6.5503 -3.2433 -5.1896 15 6 7.3428 -4.3804 -5.4425 16 6 7.8805 -4.5963 -6.7292 17 1 8.1316 -5.5969 -7.0485 18 6 8.0890 -3.5115 -7.5930 19 7 8.1251 -2.2952 -7.1173 20 14 8.3149 -3.8055 -9.4238 21 1 7.1064 -4.4727 -9.9709 22 1 8.5179 -2.5057 -10.1126 23 1 9.5008 -4.6719 -9.6433 24 6 7.5961 -5.3016 -4.4071 25 6 7.0744 -5.0888 -3.1657 26 6 2.2085 -1.1975 -0.0074 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6639 2.1264 0.0004 31 1 5.9761 0.1574 -0.8829 32 1 3.7528 -3.2637 0.2641 33 1 5.2056 -2.3449 0.7261 34 1 4.7857 -2.0115 -2.0470 35 1 5.4163 -2.1734 -3.7529 36 1 6.3534 -2.5345 -5.9802 37 1 8.2689 -1.5448 -7.7150 38 1 8.2027 -6.1748 -4.5965 39 1 7.2677 -5.7945 -2.3715 40 1 1.6869 -2.1432 -0.0128 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361982976.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:25 Heat of formation + Delta-G solvation = -34.419227 kcal Electronic energy + Delta-G solvation = -24264.514007 eV Core-core repulsion = 20622.610282 eV Total energy + Delta-G solvation = -3641.903725 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.88477 -39.05156 -37.36997 -37.14153 -34.89179 -33.91169 -33.34250 -31.95891 -30.15772 -29.48503 -27.15593 -26.84095 -25.40288 -23.42772 -22.08742 -21.38843 -20.87897 -19.71021 -18.88659 -17.57613 -17.36789 -17.00944 -16.20013 -15.65312 -15.34201 -14.76703 -14.50456 -14.31912 -14.05012 -13.95962 -13.65588 -13.40086 -13.24962 -12.85826 -12.77943 -12.60759 -12.53171 -12.14496 -11.95772 -11.84317 -11.71519 -11.39487 -11.29803 -11.02157 -10.68289 -10.13971 -10.01857 -9.63079 -9.59810 -9.38785 -9.13539 -8.80453 -8.68031 -7.76978 -7.58817 -7.07707 -4.64478 0.68295 0.94475 2.18865 2.89747 2.91836 2.95733 2.99313 3.20264 3.58374 3.70598 3.82331 3.88585 4.32015 4.45274 4.53127 4.59296 4.69730 4.89598 5.14561 5.25435 5.34184 5.49499 5.53670 5.60351 5.72652 5.90414 5.96747 5.98813 6.07028 6.27121 6.28077 6.72629 6.78582 6.81696 6.99854 7.08863 7.34882 7.38965 7.59972 7.69948 7.73773 7.81480 8.02769 8.15302 8.35319 8.58857 8.70842 9.00615 9.84220 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.002947 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.939101 B = 9499.115277 C =10290.056235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.152 4.152 3 C 0.124 3.876 4 N -0.501 5.501 5 C 0.322 3.678 6 O -0.477 6.477 7 C -0.162 4.162 8 C 0.173 3.827 9 N -0.739 5.739 10 C 0.573 3.427 11 O -0.572 6.572 12 C -0.285 4.285 13 C -0.063 4.063 14 C -0.178 4.178 15 C 0.129 3.871 16 C -0.442 4.442 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.771 5.771 20 Si 0.914 3.086 21 H -0.260 1.260 22 H -0.276 1.276 23 H -0.262 1.262 24 C -0.239 4.239 25 C -0.021 4.021 26 C -0.046 4.046 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.159 0.841 31 H 0.404 0.596 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.395 0.605 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.287 0.713 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.383 6.877 6.728 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.154 4.154 3 C -0.033 4.033 4 N -0.218 5.218 5 C 0.142 3.858 6 O -0.284 6.284 7 C -0.166 4.166 8 C 0.049 3.951 9 N -0.392 5.392 10 C 0.369 3.631 11 O -0.454 6.454 12 C -0.290 4.290 13 C -0.082 4.082 14 C -0.197 4.197 15 C 0.126 3.874 16 C -0.469 4.469 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.394 5.394 20 Si 0.738 3.262 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.186 1.186 24 C -0.259 4.259 25 C -0.040 4.040 26 C -0.072 4.072 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.177 0.823 31 H 0.263 0.737 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.229 0.771 35 H 0.104 0.896 36 H 0.138 0.862 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.710 7.331 7.913 15.921 hybrid contribution -0.217 -0.307 -1.625 1.668 sum -11.927 7.024 6.288 15.203 Atomic orbital electron populations 1.20700 0.89771 1.03218 1.02807 1.20947 0.97911 0.93881 1.02674 1.22450 0.88295 0.97741 0.94853 1.67224 1.08950 1.31706 1.13964 1.19056 0.84738 0.87249 0.94736 1.84739 1.13813 1.95642 1.34249 1.21059 0.94825 0.95868 1.04830 1.19876 0.96483 0.92065 0.86687 1.45918 1.54358 1.27429 1.11545 1.18594 0.76471 0.79316 0.88761 1.90645 1.61641 1.45970 1.47162 1.18857 1.15123 1.02620 0.92352 1.20436 0.97963 0.96033 0.93773 1.20971 1.01487 1.01054 0.96205 1.17782 0.87282 0.90367 0.91997 1.19833 1.34667 0.94858 0.97581 0.89702 1.26105 0.92298 0.94435 1.01873 1.69736 1.31404 1.00119 1.38129 0.86252 0.80281 0.78919 0.80786 1.18462 1.20029 1.18629 1.20724 1.08484 1.03397 0.93255 1.20361 0.93230 0.94411 0.95978 1.21423 0.92512 0.98732 0.94541 0.90730 0.91168 0.91091 0.82344 0.73695 0.90980 0.90189 0.77073 0.89597 0.86223 0.90138 0.88346 0.88066 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.03 36.01 0.36 -0.25 16 2 C -0.15 -1.34 5.90 -104.47 -0.62 -1.96 16 3 C 0.12 1.23 10.85 -17.56 -0.19 1.04 16 4 N -0.50 -6.49 10.39 -13.33 -0.14 -6.63 16 5 C 0.32 4.24 7.72 -17.12 -0.13 4.11 16 6 O -0.48 -6.36 12.91 -18.72 -0.24 -6.61 16 7 C -0.16 -1.97 5.28 -104.32 -0.55 -2.52 16 8 C 0.17 2.43 5.43 -5.20 -0.03 2.40 16 9 N -0.74 -11.82 5.50 -62.49 -0.34 -12.17 16 10 C 0.57 11.82 7.76 -12.42 -0.10 11.73 16 11 O -0.57 -13.37 16.32 5.29 0.09 -13.28 16 12 C -0.29 -6.33 5.89 -104.73 -0.62 -6.95 16 13 C -0.06 -1.35 9.47 -39.61 -0.38 -1.72 16 14 C -0.18 -4.25 8.64 -39.27 -0.34 -4.59 16 15 C 0.13 3.22 5.58 -106.80 -0.60 2.63 16 16 C -0.44 -10.81 9.04 -37.75 -0.34 -11.15 16 17 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 18 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 19 N -0.77 -18.12 10.95 55.56 0.61 -17.51 16 20 Si 0.91 16.98 29.60 -169.99 -5.03 11.95 16 21 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 22 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 23 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 24 C -0.24 -5.70 9.73 -39.27 -0.38 -6.08 16 25 C -0.02 -0.48 9.52 -39.61 -0.38 -0.85 16 26 C -0.05 -0.46 9.49 -39.31 -0.37 -0.83 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 31 H 0.40 4.14 9.06 45.56 0.41 4.55 16 32 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16 33 H 0.08 1.23 8.02 -51.92 -0.42 0.82 16 34 H 0.39 5.70 6.46 -40.82 -0.26 5.44 16 35 H 0.09 1.55 6.37 -52.49 -0.33 1.21 16 36 H 0.12 2.90 6.15 -52.49 -0.32 2.58 16 37 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 38 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 40 H 0.14 1.15 8.05 -52.49 -0.42 0.73 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -30.10 348.86 -8.37 -38.47 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -3.82 Total: 13.90 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -4.74 Total: -13.38 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.13 Total: -36.31 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.16 Total: -19.89 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.10 -8.37 -38.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361982976.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.046 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds