Wall clock time and date at job start Tue Mar 31 2020 10:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47460 * 2 1 4 4 C 1.50703 * 109.46862 * 240.00235 * 2 1 3 5 5 H 1.08004 * 119.99567 * 240.00120 * 4 2 1 6 6 C 1.37878 * 120.00131 * 59.99818 * 4 2 1 7 7 N 1.31507 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99865 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47072 * 60.00318 * 8 6 4 10 10 H 1.48503 * 109.46963 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47400 * 300.00007 * 8 6 4 12 12 C 1.53002 * 109.47454 * 120.00442 * 2 1 3 13 13 N 1.46508 * 109.46699 * 299.99953 * 12 2 1 14 14 C 1.34778 * 119.99744 * 180.02562 * 13 12 2 15 15 O 1.21279 * 120.00168 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99614 * 179.97438 * 14 13 12 17 17 C 1.53660 * 112.54308 * 56.31600 * 16 14 13 18 18 C 1.54893 * 100.63930 * 90.53218 * 17 16 14 19 19 C 1.50906 * 104.13873 * 26.92337 * 18 17 16 20 20 O 1.21282 * 124.59331 * 168.74949 * 19 18 17 21 21 N 1.35824 * 110.67162 * 347.79899 * 19 18 17 22 22 C 1.46840 * 138.49821 * 166.16624 * 21 19 18 23 23 C 1.54424 * 113.56445 * 195.66776 * 22 21 19 24 24 S 1.83550 * 112.61929 * 289.94918 * 16 14 13 25 25 H 1.09008 * 109.46685 * 299.99587 * 1 2 3 26 26 H 1.08994 * 109.47428 * 59.99552 * 1 2 3 27 27 H 1.08998 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47398 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47179 * 300.00559 * 3 2 1 30 30 H 1.09004 * 109.47106 * 60.00079 * 3 2 1 31 31 H 0.96995 * 120.00276 * 180.02562 * 7 6 4 32 32 H 1.08992 * 109.47194 * 180.02562 * 12 2 1 33 33 H 1.09005 * 109.47070 * 59.99385 * 12 2 1 34 34 H 0.97000 * 120.00109 * 359.97438 * 13 12 2 35 35 H 1.08999 * 111.18282 * 208.37948 * 17 16 14 36 36 H 1.09001 * 111.17875 * 332.64354 * 17 16 14 37 37 H 1.08997 * 110.46982 * 145.11190 * 18 17 16 38 38 H 1.08993 * 110.47165 * 267.71484 * 18 17 16 39 39 H 1.09003 * 108.67098 * 316.73701 * 22 21 19 40 40 H 1.09003 * 108.67657 * 74.58874 * 22 21 19 41 41 H 1.09005 * 110.98447 * 259.38556 * 23 22 21 42 42 H 1.08994 * 110.99163 * 135.57778 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8278 -2.5197 -4.0082 10 1 1.8267 -0.4198 -5.2205 11 1 3.8074 -1.1189 -4.0079 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5751 -1.4770 3.7807 16 6 1.3759 0.2198 4.9000 17 6 -0.1557 0.3405 4.9270 18 6 -0.5320 -0.9620 5.6762 19 6 0.6778 -1.2602 6.5275 20 8 0.7107 -2.0912 7.4103 21 7 1.7291 -0.4850 6.1551 22 6 3.0473 -0.0971 6.6727 23 6 3.6528 1.1323 5.9609 24 16 2.1686 1.8575 5.1419 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 0.7088 1.1614 -3.4843 32 1 3.1300 -0.7209 1.2494 33 1 1.6767 -1.7490 1.2492 34 1 0.9943 0.7581 2.3565 35 1 -0.4715 1.2215 5.4857 36 1 -0.5680 0.3484 3.9180 37 1 -1.4044 -0.7994 6.3089 38 1 -0.7188 -1.7689 4.9676 39 1 2.9530 0.1263 7.7354 40 1 3.7297 -0.9391 6.5562 41 1 4.3966 0.8295 5.2238 42 1 4.0807 1.8292 6.6815 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579205708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:10 Heat of formation + Delta-G solvation = -53.119671 kcal Electronic energy + Delta-G solvation = -24905.402306 eV Core-core repulsion = 21398.131620 eV Total energy + Delta-G solvation = -3507.270686 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.05074 -38.97961 -36.93763 -36.22600 -34.39071 -33.33650 -31.02271 -29.87298 -28.43903 -25.78236 -25.64143 -24.97113 -24.35132 -22.61040 -20.84021 -19.53477 -18.88378 -18.23138 -17.42825 -16.15991 -16.06435 -15.64235 -15.51610 -15.25682 -14.75731 -14.54336 -14.34550 -13.91806 -13.79407 -13.57644 -13.17207 -12.96767 -12.82857 -12.75110 -12.25964 -12.14929 -11.69832 -11.52980 -11.41031 -11.24273 -10.90725 -10.82094 -10.76985 -10.44510 -10.27238 -10.13206 -10.04075 -9.69973 -9.44550 -8.92148 -8.81910 -8.61287 -8.40257 -8.12641 -6.06400 -4.16830 1.08207 1.59321 2.25332 2.40799 2.91651 3.27342 3.32023 3.33013 3.39797 3.74371 3.98126 4.29193 4.35886 4.52120 4.58096 4.69444 4.94475 5.08916 5.20553 5.21705 5.35163 5.40534 5.46146 5.54714 5.83505 6.11379 6.22015 6.42839 6.63720 6.76621 6.78624 6.84337 6.88964 6.95340 7.28668 7.50052 7.64294 7.80507 7.84775 7.95664 8.07649 8.30771 8.42063 8.83122 9.49284 10.94909 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.023295 B = 0.003716 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.694609 B = 7533.052123 C = 7779.297496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.133 3.867 13 N -0.698 5.698 14 C 0.515 3.485 15 O -0.529 6.529 16 C 0.144 3.856 17 C -0.109 4.109 18 C -0.144 4.144 19 C 0.549 3.451 20 O -0.518 6.518 21 N -0.602 5.602 22 C 0.126 3.874 23 C -0.080 4.080 24 S -0.224 6.224 25 H 0.005 0.995 26 H 0.087 0.913 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.008 0.992 31 H 0.261 0.739 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.401 0.599 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 4.343 15.487 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.011 3.989 13 N -0.349 5.349 14 C 0.294 3.706 15 O -0.406 6.406 16 C -0.056 4.056 17 C -0.149 4.149 18 C -0.185 4.185 19 C 0.338 3.662 20 O -0.392 6.392 21 N -0.339 5.339 22 C 0.004 3.996 23 C -0.228 4.228 24 S 0.004 5.996 25 H 0.024 0.976 26 H 0.105 0.895 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.125 0.875 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.052 4.402 15.752 16.389 hybrid contribution 0.631 -1.079 -0.743 1.454 sum -0.422 3.322 15.009 15.378 Atomic orbital electron populations 1.21841 0.97700 0.99210 1.00135 1.18361 0.92839 0.92861 0.90320 1.21829 0.98650 0.98175 1.00209 1.20913 1.31724 1.12172 0.89831 0.92518 1.24858 0.94801 0.94882 0.98816 1.69780 1.36494 1.22618 1.23410 0.86637 0.79254 0.79797 0.82192 1.20286 1.21302 1.20285 1.21829 0.98351 0.95799 0.82928 1.46178 1.51978 1.31516 1.05237 1.19869 0.81818 0.84710 0.84184 1.90722 1.37787 1.25801 1.86275 1.24322 1.00049 0.91691 0.89584 1.22637 0.88976 0.99208 1.04035 1.22402 0.97063 0.99085 0.99914 1.20967 0.83368 0.78835 0.83039 1.90723 1.83373 1.32035 1.33094 1.49503 1.16658 1.46441 1.21342 1.21492 0.82864 0.97010 0.98250 1.24692 0.97907 0.97837 1.02393 1.88397 1.23148 1.09079 1.78947 0.97580 0.89477 0.95359 0.95407 0.89561 0.97333 0.92893 0.92457 0.92416 0.76334 0.87518 0.87628 0.86507 0.86682 0.89720 0.89850 0.87533 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.08 37.16 0.30 -2.47 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 4 C -0.51 -12.80 8.01 -34.44 -0.28 -13.07 16 5 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -22.79 9.35 55.43 0.52 -22.28 16 8 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 12 C 0.13 2.65 4.50 -4.04 -0.02 2.63 16 13 N -0.70 -11.47 4.71 -60.29 -0.28 -11.76 16 14 C 0.52 8.36 6.85 -10.99 -0.08 8.28 16 15 O -0.53 -10.51 16.63 5.56 0.09 -10.42 16 16 C 0.14 1.83 0.72 -67.80 -0.05 1.78 16 17 C -0.11 -1.06 6.28 -25.39 -0.16 -1.22 16 18 C -0.14 -1.45 6.79 -26.78 -0.18 -1.63 16 19 C 0.55 7.73 8.36 -10.41 -0.09 7.65 16 20 O -0.52 -9.01 18.03 5.56 0.10 -8.91 16 21 N -0.60 -7.97 2.92 -159.84 -0.47 -8.44 16 22 C 0.13 1.38 7.25 -3.11 -0.02 1.36 16 23 C -0.08 -0.74 7.55 37.90 0.29 -0.46 16 24 S -0.22 -2.57 22.33 -107.50 -2.40 -4.97 16 25 H 0.01 0.10 6.86 -51.92 -0.36 -0.26 16 26 H 0.09 2.06 6.07 -51.93 -0.32 1.75 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 30 H 0.01 0.15 6.86 -51.93 -0.36 -0.21 16 31 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.40 6.01 5.66 -40.82 -0.23 5.77 16 35 H 0.11 0.85 7.90 -51.93 -0.41 0.44 16 36 H 0.11 0.95 7.36 -51.93 -0.38 0.57 16 37 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 347.21 15.07 5.23 5.23 Total: -1.00 -30.53 347.21 -8.52 -39.05 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.14 Total: 4.16 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -0.15 Total: 3.14 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -0.23 Total: -42.47 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.19 Total: -19.33 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.40 Total: -4.97 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.53 -8.52 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579205708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.071 kcal (2) G-P(sol) polarization free energy of solvation -30.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds